Run ID: ERR2513803
Sample name:
Date: 31-03-2023 19:54:45
Number of reads: 1107361
Percentage reads mapped: 96.36
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4408087 | c.115delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9596 | c.2295G>T | synonymous_variant | 0.97 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.12 |
rpoC | 763025 | c.-345C>T | upstream_gene_variant | 0.13 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764181 | p.Asp271Gly | missense_variant | 0.88 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.12 |
rpoC | 764195 | p.Ser276Ile | missense_variant | 0.13 |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.13 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.12 |
rpoC | 764215 | c.846A>G | synonymous_variant | 0.12 |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.13 |
rpoC | 765544 | c.2175C>G | synonymous_variant | 0.97 |
rpoC | 766882 | c.3513C>T | synonymous_variant | 0.11 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.11 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.12 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.17 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.12 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.16 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.14 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.17 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.17 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.17 |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.12 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.17 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304085 | c.1155C>T | synonymous_variant | 0.15 |
fbiC | 1304091 | p.Asp387Glu | missense_variant | 0.13 |
fbiC | 1304092 | p.Met388Leu | missense_variant | 0.13 |
fbiC | 1304097 | c.1167G>C | synonymous_variant | 0.13 |
fbiC | 1304106 | c.1176G>C | synonymous_variant | 0.13 |
fbiC | 1304127 | c.1197A>G | synonymous_variant | 0.12 |
fbiC | 1304132 | p.Ala401Gly | missense_variant | 0.13 |
fbiC | 1304142 | c.1212G>C | synonymous_variant | 0.14 |
fbiC | 1304161 | p.Arg411Ser | missense_variant | 0.14 |
fbiC | 1304169 | c.1239T>C | synonymous_variant | 0.11 |
fbiC | 1304174 | p.Val415Ala | missense_variant | 0.11 |
fbiC | 1305049 | p.Thr707Ser | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474702 | n.1045G>T | non_coding_transcript_exon_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.18 |
PPE35 | 2170769 | c.-157C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2518624 | c.510C>G | synonymous_variant | 0.12 |
kasA | 2518639 | c.525G>C | synonymous_variant | 0.12 |
kasA | 2518657 | c.543G>C | synonymous_variant | 0.12 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ahpC | 2726348 | c.156T>C | synonymous_variant | 0.12 |
ahpC | 2726357 | c.165A>G | synonymous_variant | 0.12 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.14 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.14 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.15 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.11 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.13 |
thyA | 3074641 | c.-170C>A | upstream_gene_variant | 0.18 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640349 | c.-194A>C | upstream_gene_variant | 1.0 |
alr | 3841069 | p.Ile118Phe | missense_variant | 0.13 |
rpoA | 3878648 | c.-141C>A | upstream_gene_variant | 0.33 |
embC | 4240376 | p.Val172Met | missense_variant | 1.0 |
embC | 4240630 | c.768C>A | synonymous_variant | 0.14 |
embC | 4240632 | p.Met257Thr | missense_variant | 0.14 |
embC | 4240642 | c.780G>C | synonymous_variant | 0.14 |
embC | 4240645 | c.783G>C | synonymous_variant | 0.14 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242511 | c.-722G>C | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |