Run ID: ERR4800101
Sample name:
Date: 01-04-2023 09:35:38
Number of reads: 2887969
Percentage reads mapped: 99.47
Strain: lineage4.1.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.98 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 760314 | p.Val170Phe | missense_variant | 0.98 | rifampicin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
inhA | 1674481 | p.Ser94Ala | missense_variant | 1.0 | isoniazid, ethionamide |
pncA | 2288826 | p.Val139Gly | missense_variant | 0.93 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 762285 | p.Arg827Cys | missense_variant | 0.96 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.97 |
rpoC | 766070 | c.2701C>T | synonymous_variant | 0.89 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776186 | c.2295C>T | synonymous_variant | 0.97 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.99 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714923 | p.Leu137Ser | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 0.94 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
rpoA | 3878559 | c.-53_-52insC | upstream_gene_variant | 0.19 |
rpoA | 3878601 | c.-95delG | upstream_gene_variant | 0.34 |
rpoA | 3878613 | c.-113_-107delCAACCCA | upstream_gene_variant | 0.23 |
embC | 4240897 | c.1035C>G | synonymous_variant | 0.94 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.99 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.97 |
ubiA | 4269292 | p.Ala181Val | missense_variant | 0.99 |
ethR | 4327691 | p.Asp48Gly | missense_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408148 | p.Ala19Thr | missense_variant | 0.98 |