Run ID: ERR4818480
Sample name:
Date: 01-04-2023 15:35:02
Number of reads: 4210017
Percentage reads mapped: 98.34
Strain: lineage3
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472908 | n.1063G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473056 | n.1211A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474635 | n.978C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168863 | c.1750C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642877 | p.Lys448Arg | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407980 | p.Pro75Ser | missense_variant | 1.0 |