Run ID: ERR4819524
Sample name:
Date: 01-04-2023 16:09:30
Number of reads: 471316
Percentage reads mapped: 95.01
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.25 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6949 | c.-353A>G | upstream_gene_variant | 0.11 |
gyrA | 6952 | c.-350C>G | upstream_gene_variant | 0.1 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9596 | c.2295G>T | synonymous_variant | 1.0 |
gyrA | 9777 | p.Asn826Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoB | 762636 | p.Lys944Glu | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.93 |
rpoB | 763104 | p.Ile1100Phe | missense_variant | 0.11 |
rpoC | 764181 | p.Asp271Gly | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777122 | c.1359C>T | synonymous_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471771 | n.-74delG | upstream_gene_variant | 1.0 |
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471925 | n.80_81insGCAGCTTG | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471928 | n.83T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471930 | n.88_89delGA | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471978 | n.133C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1471996 | n.151C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472761 | n.916A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473285 | n.1442_1443delCC | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473293 | n.1448G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474798 | n.1141C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474825 | n.1168G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474837 | n.1180A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474921 | n.1264C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154495 | c.1617C>A | synonymous_variant | 0.13 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170769 | c.-157C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
eis | 2714756 | p.Pro193Ser | missense_variant | 1.0 |
eis | 2715432 | c.-100C>T | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3067155 | c.-964C>A | upstream_gene_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249329 | p.Met939Arg | missense_variant | 0.17 |
aftB | 4268197 | p.Val214Met | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |