TB-Profiler result

Run: SRR13861368
Summary

Run ID: SRR13861368

Sample name:

Date: 03-04-2023 09:30:03

Number of reads: 197456

Percentage reads mapped: 9.88

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761131 p.Gly442Glu missense_variant 0.27 rifampicin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.44 streptomycin
embB 4247708 p.Asn399Asp missense_variant 0.22 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5785 c.546C>T synonymous_variant 1.0
gyrB 6314 c.1076dupC frameshift_variant 1.0
gyrA 6824 c.-478C>T upstream_gene_variant 0.2
gyrA 6841 c.-461T>C upstream_gene_variant 0.22
gyrA 6844 c.-458T>G upstream_gene_variant 0.22
gyrA 6853 c.-449A>G upstream_gene_variant 0.25
gyrA 6856 c.-446T>C upstream_gene_variant 0.22
gyrA 6859 c.-443T>C upstream_gene_variant 0.22
gyrA 6862 c.-440C>G upstream_gene_variant 0.25
gyrA 7495 p.Arg65His missense_variant 1.0
gyrA 7637 c.336C>G synonymous_variant 0.14
gyrA 7649 c.348C>T synonymous_variant 0.15
gyrA 7652 c.351C>T synonymous_variant 0.15
gyrA 7658 c.357A>G synonymous_variant 0.18
gyrA 7664 c.363T>C synonymous_variant 0.18
gyrA 7670 c.369A>G synonymous_variant 0.18
gyrA 7676 c.375G>C synonymous_variant 0.18
gyrA 7683 c.382A>C synonymous_variant 0.18
gyrA 7694 c.393A>G synonymous_variant 0.18
gyrA 7697 c.396C>G synonymous_variant 0.2
gyrA 7710 c.409T>C synonymous_variant 0.2
gyrA 7715 c.414G>C synonymous_variant 0.18
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.2
gyrA 7760 c.459C>T synonymous_variant 0.22
gyrA 7763 c.462T>C synonymous_variant 0.22
gyrA 8054 c.753T>C synonymous_variant 0.29
gyrA 8156 c.855T>C synonymous_variant 0.25
gyrA 8339 c.1038A>G synonymous_variant 0.25
gyrA 8342 c.1041G>C synonymous_variant 0.25
gyrA 8366 c.1065G>C synonymous_variant 0.25
gyrA 8375 c.1074G>C synonymous_variant 0.29
gyrA 8391 p.Tyr364His missense_variant 0.25
gyrA 8399 c.1098T>C synonymous_variant 0.25
gyrA 8420 c.1119T>C synonymous_variant 0.29
gyrA 8423 c.1122G>C synonymous_variant 0.29
gyrA 8442 c.1141C>T synonymous_variant 0.33
gyrA 8780 p.Asp493Glu missense_variant 1.0
gyrA 8786 c.1485T>C synonymous_variant 0.33
ccsA 620129 p.Gly80Ala missense_variant 1.0
ccsA 620703 c.813G>C synonymous_variant 0.29
ccsA 620710 p.Val274Ile missense_variant 0.25
ccsA 620718 c.828G>C synonymous_variant 0.25
ccsA 620721 c.831G>C synonymous_variant 0.25
ccsA 620730 c.840C>T synonymous_variant 0.17
ccsA 620733 c.843G>C synonymous_variant 0.17
ccsA 620734 c.844C>A synonymous_variant 0.17
ccsA 620739 c.849A>G synonymous_variant 0.18
ccsA 620745 c.855G>C synonymous_variant 0.2
ccsA 620748 c.858T>A synonymous_variant 0.2
ccsA 620778 c.888T>C synonymous_variant 0.2
ccsA 620784 c.894C>G synonymous_variant 0.22
ccsA 620787 c.897C>G synonymous_variant 0.22
ccsA 620809 c.919C>T synonymous_variant 0.25
rpoB 760475 c.669A>G synonymous_variant 0.22
rpoB 760481 c.675G>C synonymous_variant 0.25
rpoB 760514 c.708C>T synonymous_variant 0.22
rpoB 760522 p.Ser239Asn missense_variant 0.22
rpoB 760532 c.726T>C synonymous_variant 0.25
rpoB 760533 p.Val243Thr missense_variant 0.25
rpoB 760547 c.741G>C synonymous_variant 0.3
rpoB 760563 p.Arg253Met missense_variant 0.33
rpoB 760591 p.Val262Ala missense_variant 0.3
rpoB 760611 c.805T>C synonymous_variant 0.33
rpoB 760634 c.828T>C synonymous_variant 0.38
rpoB 760646 c.840C>G synonymous_variant 0.38
rpoB 760655 c.849A>G synonymous_variant 0.29
rpoB 760661 c.855A>C synonymous_variant 0.29
rpoB 760670 c.864G>C synonymous_variant 0.25
rpoB 760674 c.868T>C synonymous_variant 0.25
rpoB 760679 c.873A>G synonymous_variant 0.25
rpoB 760718 c.912C>G synonymous_variant 0.29
rpoB 760721 c.915C>G synonymous_variant 0.29
rpoB 760724 c.918T>C synonymous_variant 0.29
rpoB 760730 c.924T>C synonymous_variant 0.29
rpoB 760751 c.945G>C synonymous_variant 0.29
rpoB 760757 c.951T>C synonymous_variant 0.29
rpoB 760759 p.Val318Ala missense_variant 0.29
rpoB 760763 c.957C>T synonymous_variant 0.25
rpoB 760769 c.963C>G synonymous_variant 0.29
rpoB 760775 c.969G>C synonymous_variant 0.29
rpoB 760776 c.970_972delTCGinsAGC synonymous_variant 0.29
rpoB 760793 c.987A>G synonymous_variant 0.33
rpoB 760805 c.999G>C synonymous_variant 0.33
rpoB 760817 c.1011A>G synonymous_variant 0.4
rpoB 760820 c.1014T>C synonymous_variant 0.4
rpoB 760826 c.1020C>G synonymous_variant 0.4
rpoB 760830 c.1024T>C synonymous_variant 0.4
rpoB 760845 p.Thr347Pro missense_variant 0.4
rpoB 761094 c.1288C>T synonymous_variant 0.29
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.29
rpoB 761126 c.1320G>T synonymous_variant 0.27
rpoB 761129 c.1323G>C synonymous_variant 0.27
rpoB 761133 p.Leu443Ile missense_variant 0.33
rpoB 761150 c.1344A>C synonymous_variant 0.5
rpoB 761151 p.Leu449Val missense_variant 0.3
rpoB 761156 c.1350G>C synonymous_variant 0.27
rpoB 761162 c.1356G>C synonymous_variant 0.27
rpoB 761165 c.1359G>C synonymous_variant 0.45
rpoB 761168 c.1362C>G synonymous_variant 0.45
rpoB 761171 c.1365C>T synonymous_variant 0.18
rpoB 761178 p.Ser458Thr missense_variant 0.27
rpoB 761183 c.1377T>G synonymous_variant 0.27
rpoB 761189 c.1383T>G synonymous_variant 0.33
rpoB 761192 c.1386C>G synonymous_variant 0.25
rpoB 761195 c.1389G>C synonymous_variant 0.25
rpoB 761196 p.Leu464Phe missense_variant 0.25
rpoB 761204 c.1398C>T synonymous_variant 0.23
rpoB 761207 c.1401C>T synonymous_variant 0.23
rpoB 761213 c.1407G>A synonymous_variant 0.23
rpoB 761220 p.Ser472Thr missense_variant 0.25
rpoB 761234 c.1428G>C synonymous_variant 0.27
rpoB 761235 p.Met477Val missense_variant 0.18
rpoB 761249 c.1443A>G synonymous_variant 0.22
rpoB 761255 c.1449T>G synonymous_variant 0.25
rpoB 761261 c.1455G>T synonymous_variant 0.33
rpoB 761845 p.Gln680Arg missense_variant 1.0
rpoC 764401 c.1032C>T synonymous_variant 0.43
rpoC 764404 c.1035C>T synonymous_variant 0.43
rpoC 764405 c.1036A>C synonymous_variant 0.67
rpoC 764419 c.1050C>T synonymous_variant 0.43
rpoC 764428 c.1059G>T synonymous_variant 0.43
rpoC 764434 c.1065A>G synonymous_variant 0.57
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.43
rpoC 764441 p.Ile358Leu missense_variant 0.38
rpoC 764446 c.1077T>C synonymous_variant 0.5
rpoC 764451 p.Gly361Ala missense_variant 0.38
rpoC 764455 c.1086G>T synonymous_variant 0.43
rpoC 764461 p.Glu364Asp missense_variant 0.43
rpoC 764470 c.1101C>G synonymous_variant 0.38
rpoC 764471 p.Asn368Arg missense_variant 0.38
rpoC 764479 c.1110G>A synonymous_variant 0.43
rpoC 764485 c.1116G>C synonymous_variant 0.38
rpoC 764497 c.1128A>G synonymous_variant 0.22
rpoC 764498 p.Ser377Ala missense_variant 0.33
rpoC 764503 c.1134G>C synonymous_variant 0.33
rpoC 764509 c.1140G>C synonymous_variant 0.43
rpoC 764513 p.Phe382Leu missense_variant 0.43
rpoC 764521 c.1152T>C synonymous_variant 0.57
rpoC 764527 c.1158C>T synonymous_variant 0.33
rpoC 764720 c.1351C>T synonymous_variant 0.4
rpoC 764752 c.1383G>C synonymous_variant 0.5
rpoC 764764 c.1395T>C synonymous_variant 0.4
rpoC 764791 c.1422C>G synonymous_variant 0.4
rpoC 765287 c.1918C>T synonymous_variant 0.25
rpoC 765292 c.1923G>T synonymous_variant 0.25
rpoC 765298 c.1929G>C synonymous_variant 0.25
rpoC 765300 p.Val644Ala missense_variant 0.25
rpoC 765319 c.1950A>G synonymous_variant 0.29
rpoC 765326 p.His653Ala missense_variant 0.25
rpoC 765330 p.Ser654Asn missense_variant 0.25
rpoC 765349 c.1980T>C synonymous_variant 0.22
rpoC 765352 c.1983G>C synonymous_variant 0.25
rpoC 766390 c.3021C>T synonymous_variant 0.22
rpoC 766408 c.3039C>T synonymous_variant 0.2
rpoC 766426 c.3057C>T synonymous_variant 0.18
rpoC 766447 c.3078T>C synonymous_variant 0.17
rpoC 766483 c.3114G>C synonymous_variant 0.29
rpoC 766484 p.Val1039Ile missense_variant 0.29
rpoC 766492 c.3123T>C synonymous_variant 0.25
rpoC 766495 c.3126C>T synonymous_variant 0.25
rpoC 766522 c.3153C>G synonymous_variant 0.29
rpoC 766528 c.3159T>C synonymous_variant 0.33
rpoC 766804 c.3435A>G synonymous_variant 0.18
rpoC 766843 c.3474T>C synonymous_variant 0.18
rpoC 766861 c.3492G>C synonymous_variant 0.27
rpoC 766864 c.3495G>C synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.22
rpoC 766895 c.3526T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.25
rpoC 766933 c.3564A>G synonymous_variant 0.31
rpoC 766945 c.3576A>G synonymous_variant 0.31
rpoC 766963 c.3594T>C synonymous_variant 0.27
rpoC 766978 c.3609C>G synonymous_variant 0.27
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.3
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.33
rpoC 767059 c.3690T>G synonymous_variant 0.25
rpoC 767062 c.3693C>A synonymous_variant 0.25
rpoC 767074 c.3705T>C synonymous_variant 0.4
rpsL 781793 c.234G>C synonymous_variant 0.4
rpsL 781832 c.273T>C synonymous_variant 0.43
rpsL 781841 c.282C>G synonymous_variant 0.43
rpsL 781859 c.300T>C synonymous_variant 0.43
rpsL 781868 c.309T>C synonymous_variant 0.43
rpsL 781871 c.312G>C synonymous_variant 0.43
rpsL 781892 c.333A>G synonymous_variant 0.43
rpsL 781898 c.339A>T synonymous_variant 0.43
rpsL 781916 c.357T>C synonymous_variant 0.43
rpsL 781929 p.Gly124Ser missense_variant 0.43
rplC 800937 c.129A>G synonymous_variant 1.0
fbiC 1303584 c.654C>G synonymous_variant 0.43
fbiC 1303590 c.660A>G synonymous_variant 0.43
fbiC 1303602 c.672A>G synonymous_variant 0.43
fbiC 1303605 c.675C>G synonymous_variant 0.43
fbiC 1303608 c.678G>A synonymous_variant 0.43
fbiC 1303611 c.681G>C synonymous_variant 0.43
fbiC 1303614 c.684C>T synonymous_variant 0.43
fbiC 1303617 c.687C>G synonymous_variant 0.43
fbiC 1303632 c.702T>G synonymous_variant 0.6
fbiC 1303638 c.708A>G synonymous_variant 0.5
fbiC 1303653 c.723G>C synonymous_variant 0.5
fbiC 1303659 c.729T>C synonymous_variant 0.43
fbiC 1303660 p.Val244Thr missense_variant 0.43
fbiC 1303674 c.744C>G synonymous_variant 0.44
fbiC 1303686 c.756C>G synonymous_variant 0.44
fbiC 1303695 c.765T>C synonymous_variant 0.4
fbiC 1303708 c.778T>C synonymous_variant 0.36
fbiC 1303728 c.798G>A synonymous_variant 0.3
fbiC 1303730 p.Leu267Pro missense_variant 0.22
fbiC 1303732 p.Ser268Ala missense_variant 0.22
fbiC 1303737 c.807G>A synonymous_variant 0.22
fbiC 1303746 c.816T>C synonymous_variant 0.18
fbiC 1303749 c.819G>C synonymous_variant 0.18
fbiC 1303752 c.822A>G synonymous_variant 0.18
fbiC 1303755 c.825T>C synonymous_variant 0.18
fbiC 1303836 c.906G>C synonymous_variant 0.22
fbiC 1303845 c.915C>G synonymous_variant 0.3
fbiC 1303846 p.Phe306Val missense_variant 0.3
fbiC 1303854 c.924T>C synonymous_variant 0.3
fbiC 1303860 c.930A>C synonymous_variant 0.27
fbiC 1303881 c.951G>C synonymous_variant 0.33
fbiC 1303884 c.954T>G synonymous_variant 0.33
fbiC 1303911 c.981G>C synonymous_variant 0.3
fbiC 1303914 c.984C>G synonymous_variant 0.3
fbiC 1303920 c.990C>G synonymous_variant 0.27
fbiC 1303923 c.993C>T synonymous_variant 0.27
fbiC 1303929 c.999G>C synonymous_variant 0.27
fbiC 1303947 c.1017T>C synonymous_variant 0.25
fbiC 1303948 p.Gly340Arg missense_variant 0.25
fbiC 1303969 p.Val347Ile missense_variant 0.2
fbiC 1303973 p.Gly348Ala missense_variant 0.2
fbiC 1303995 c.1065C>T synonymous_variant 0.22
fbiC 1304001 c.1071C>G synonymous_variant 0.2
fbiC 1304008 c.1078T>C synonymous_variant 0.25
fbiC 1304034 c.1104A>G synonymous_variant 0.25
fbiC 1304040 c.1110C>G synonymous_variant 0.29
fbiC 1304046 c.1116C>G synonymous_variant 0.29
fbiC 1304049 c.1119T>G synonymous_variant 0.29
fbiC 1304058 c.1128G>A synonymous_variant 0.25
fbiC 1304059 c.1129C>T synonymous_variant 0.25
fbiC 1304064 c.1134G>C synonymous_variant 0.25
fbiC 1304067 c.1137G>C synonymous_variant 0.25
fbiC 1304073 c.1143C>T synonymous_variant 0.25
fbiC 1304080 p.Ala384Ser missense_variant 0.25
fbiC 1304091 p.Asp387Glu missense_variant 0.25
fbiC 1304092 p.Met388Leu missense_variant 0.25
fbiC 1304097 c.1167G>C synonymous_variant 0.29
atpE 1461132 p.Val30Ile missense_variant 0.29
atpE 1461149 c.105T>G synonymous_variant 0.25
atpE 1461150 p.Ile36Val missense_variant 0.25
atpE 1461159 p.Val39Ile missense_variant 0.25
atpE 1461185 c.141G>C synonymous_variant 0.33
atpE 1461189 c.145C>T synonymous_variant 0.33
atpE 1461194 c.150C>T synonymous_variant 0.33
atpE 1461197 c.153A>G synonymous_variant 0.33
atpE 1461219 c.175T>C synonymous_variant 0.4
atpE 1461224 c.180T>C synonymous_variant 0.4
atpE 1461233 c.189A>G synonymous_variant 0.33
atpE 1461254 c.210T>C synonymous_variant 0.33
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.25
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.25
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.25
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.25
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.25
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.25
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.33
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.4
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.38
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.38
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.38
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.38
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.43
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.43
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.4
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.38
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.31
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.35
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.35
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.38
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.43
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.43
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.43
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.43
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.2
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.2
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.18
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.25
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.25
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.25
rrl 1473944 n.287G>A non_coding_transcript_exon_variant 0.25
rrl 1473945 n.288T>C non_coding_transcript_exon_variant 0.25
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.2
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.25
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.25
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.25
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.29
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.29
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.29
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.29
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.2
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.14
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.17
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.17
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.17
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.18
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.2
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.22
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 0.22
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.18
rrl 1475592 n.1935A>T non_coding_transcript_exon_variant 0.88
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.64
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.74
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.74
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.77
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.74
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.85
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.88
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.88
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.88
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.88
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.83
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.83
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.81
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.81
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.83
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.81
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.83
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.83
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.83
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.82
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.61
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.36
rpsA 1833568 c.27G>C synonymous_variant 0.29
rpsA 1833589 c.48A>T synonymous_variant 0.4
rpsA 1833595 c.54T>C synonymous_variant 0.33
rpsA 1833619 c.78A>C synonymous_variant 0.4
rpsA 1833661 c.120A>G synonymous_variant 0.5
rpsA 1833667 c.126C>G synonymous_variant 0.5
rpsA 1833724 c.183C>G synonymous_variant 0.5
rpsA 1833727 c.186G>C synonymous_variant 0.5
rpsA 1833742 c.201A>G synonymous_variant 0.5
rpsA 1833745 c.204G>C synonymous_variant 0.67
rpsA 1833787 c.246C>G synonymous_variant 0.5
rpsA 1833790 c.249T>A synonymous_variant 0.5
rpsA 1833799 c.258C>G synonymous_variant 0.4
rpsA 1833811 c.270G>C synonymous_variant 0.4
rpsA 1833838 c.297G>C synonymous_variant 0.4
rpsA 1833841 c.300C>G synonymous_variant 0.4
rpsA 1833847 c.306C>G synonymous_variant 0.4
rpsA 1834546 c.1005T>C synonymous_variant 0.33
rpsA 1834555 c.1014T>C synonymous_variant 0.29
rpsA 1834558 c.1017C>G synonymous_variant 0.33
rpsA 1834606 c.1065C>G synonymous_variant 0.4
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834623 p.Ser361Cys missense_variant 0.4
rpsA 1834633 c.1092A>G synonymous_variant 0.4
rpsA 1834639 c.1098T>C synonymous_variant 0.4
rpsA 1834666 c.1125G>C synonymous_variant 0.5
rpsA 1834669 c.1128G>C synonymous_variant 0.6
rpsA 1834688 p.Ser383Cys missense_variant 0.5
rpsA 1834732 c.1191T>C synonymous_variant 0.33
rpsA 1834733 p.Ala398Pro missense_variant 0.33
rpsA 1834753 c.1212T>C synonymous_variant 0.29
rpsA 1834765 c.1224A>G synonymous_variant 0.33
rpsA 1834780 c.1239A>G synonymous_variant 0.33
rpsA 1834786 c.1245A>G synonymous_variant 0.33
rpsA 1834789 c.1248T>C synonymous_variant 0.33
rpsA 1834792 c.1251G>C synonymous_variant 0.33
tlyA 1918324 p.Val129Leu missense_variant 1.0
PPE35 2168503 p.Phe704Leu missense_variant 1.0
PPE35 2168604 p.Pro670His missense_variant 1.0
ahpC 2726771 c.579T>A synonymous_variant 1.0
folC 2746808 p.Ala264Gly missense_variant 1.0
Rv2752c 3067057 c.-867_-866insG upstream_gene_variant 1.0
ald 3087587 c.769delC frameshift_variant 1.0
fbiA 3641252 p.Thr237Ser missense_variant 1.0
rpoA 3877496 p.Glu338* stop_gained 1.0
ddn 3986684 c.-160G>C upstream_gene_variant 1.0
clpC1 4039268 c.1437C>G synonymous_variant 0.33
clpC1 4039274 c.1431G>C synonymous_variant 0.33
embC 4240480 c.618G>A synonymous_variant 1.0
embC 4240600 c.738G>C synonymous_variant 0.18
embC 4240632 p.Met257Thr missense_variant 0.25
embC 4240642 c.780G>C synonymous_variant 0.4
embC 4240645 c.783G>C synonymous_variant 0.27
embC 4240654 c.792C>T synonymous_variant 0.25
embC 4240657 c.795G>C synonymous_variant 0.25
embC 4240671 p.Thr270Ile missense_variant 0.25
embC 4240678 c.816T>G synonymous_variant 0.23
embC 4240685 p.Thr275Ala missense_variant 0.21
embC 4240693 c.831T>C synonymous_variant 0.21
embC 4240706 p.Val282Thr missense_variant 0.21
embC 4240726 c.864G>C synonymous_variant 0.23
embC 4240780 c.918T>C synonymous_variant 0.15
embC 4240783 c.921G>C synonymous_variant 0.17
embC 4240789 c.927T>C synonymous_variant 0.15
embC 4240819 c.957A>G synonymous_variant 0.23
embC 4240825 c.963G>A synonymous_variant 0.25
embC 4240831 c.969T>G synonymous_variant 0.27
embC 4240867 c.1005T>G synonymous_variant 0.23
embC 4240870 c.1008T>C synonymous_variant 0.21
embC 4240879 c.1017G>C synonymous_variant 0.21
embC 4240880 p.Ala340Thr missense_variant 0.21
embC 4240885 c.1023T>C synonymous_variant 0.21
embC 4240919 c.1057_1059delCTCinsTTG synonymous_variant 0.13
embC 4240945 c.1083T>C synonymous_variant 0.17
embC 4240951 c.1089C>G synonymous_variant 0.18
embC 4240954 p.Ile364Met missense_variant 0.18
embC 4240957 c.1095C>G synonymous_variant 0.2
embC 4241023 c.1161T>G synonymous_variant 0.17
embC 4241026 c.1164C>G synonymous_variant 0.17
embC 4241035 c.1173G>A synonymous_variant 0.17
embC 4241671 c.1809T>G synonymous_variant 0.22
embC 4241689 c.1827G>C synonymous_variant 0.17
embC 4241691 p.Gly610Ala missense_variant 0.17
embC 4241695 c.1833T>G synonymous_variant 0.17
embC 4241704 c.1842C>G synonymous_variant 0.15
embC 4241707 c.1845G>C synonymous_variant 0.15
embC 4241713 c.1851G>C synonymous_variant 0.15
embC 4241719 c.1857G>C synonymous_variant 0.15
embC 4241725 c.1863G>C synonymous_variant 0.17
embC 4241727 p.Phe622Tyr missense_variant 0.17
embC 4241741 p.Val627Leu missense_variant 0.17
embC 4241746 c.1884C>T synonymous_variant 0.18
embC 4241747 p.Val629Leu missense_variant 0.18
embC 4241750 p.Leu630Val missense_variant 0.17
embC 4241755 c.1893C>G synonymous_variant 0.17
embC 4241809 c.1947A>G synonymous_variant 0.13
embA 4244410 p.Trp393Ser missense_variant 1.0
embB 4247491 c.978G>C synonymous_variant 0.29
embB 4247497 c.984T>C synonymous_variant 0.29
embB 4247500 c.987C>G synonymous_variant 0.29
embB 4247512 c.999T>C synonymous_variant 0.25
embB 4247716 c.1203C>G synonymous_variant 0.22
embB 4247722 c.1209G>C synonymous_variant 0.18
embB 4247725 c.1212G>C synonymous_variant 0.22
embB 4247729 p.Gly406Pro missense_variant 0.2
embB 4247743 c.1230C>G synonymous_variant 0.2
embB 4247746 c.1233C>A synonymous_variant 0.2
embB 4247773 c.1260G>A synonymous_variant 0.22
embB 4247776 c.1263G>T synonymous_variant 0.22
embB 4247779 c.1266C>G synonymous_variant 0.22
embB 4247785 c.1272G>C synonymous_variant 0.25
embB 4247800 c.1287A>C synonymous_variant 0.22
embB 4247806 c.1293G>C synonymous_variant 0.22
embB 4247819 p.Val436Ile missense_variant 0.2
embB 4247824 c.1311C>G synonymous_variant 0.2
embB 4247830 c.1317A>C synonymous_variant 0.2
embB 4247836 c.1323A>G synonymous_variant 0.2
embB 4247842 c.1329T>C synonymous_variant 0.2
embB 4249447 c.2934G>A synonymous_variant 1.0
whiB6 4338681 c.-160A>T upstream_gene_variant 1.0