Run ID: SRR13861368
Sample name:
Date: 03-04-2023 09:30:03
Number of reads: 197456
Percentage reads mapped: 9.88
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761131 | p.Gly442Glu | missense_variant | 0.27 | rifampicin |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.44 | streptomycin |
embB | 4247708 | p.Asn399Asp | missense_variant | 0.22 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5785 | c.546C>T | synonymous_variant | 1.0 |
gyrB | 6314 | c.1076dupC | frameshift_variant | 1.0 |
gyrA | 6824 | c.-478C>T | upstream_gene_variant | 0.2 |
gyrA | 6841 | c.-461T>C | upstream_gene_variant | 0.22 |
gyrA | 6844 | c.-458T>G | upstream_gene_variant | 0.22 |
gyrA | 6853 | c.-449A>G | upstream_gene_variant | 0.25 |
gyrA | 6856 | c.-446T>C | upstream_gene_variant | 0.22 |
gyrA | 6859 | c.-443T>C | upstream_gene_variant | 0.22 |
gyrA | 6862 | c.-440C>G | upstream_gene_variant | 0.25 |
gyrA | 7495 | p.Arg65His | missense_variant | 1.0 |
gyrA | 7637 | c.336C>G | synonymous_variant | 0.14 |
gyrA | 7649 | c.348C>T | synonymous_variant | 0.15 |
gyrA | 7652 | c.351C>T | synonymous_variant | 0.15 |
gyrA | 7658 | c.357A>G | synonymous_variant | 0.18 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.18 |
gyrA | 7670 | c.369A>G | synonymous_variant | 0.18 |
gyrA | 7676 | c.375G>C | synonymous_variant | 0.18 |
gyrA | 7683 | c.382A>C | synonymous_variant | 0.18 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.18 |
gyrA | 7697 | c.396C>G | synonymous_variant | 0.2 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.2 |
gyrA | 7715 | c.414G>C | synonymous_variant | 0.18 |
gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 0.2 |
gyrA | 7760 | c.459C>T | synonymous_variant | 0.22 |
gyrA | 7763 | c.462T>C | synonymous_variant | 0.22 |
gyrA | 8054 | c.753T>C | synonymous_variant | 0.29 |
gyrA | 8156 | c.855T>C | synonymous_variant | 0.25 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.25 |
gyrA | 8342 | c.1041G>C | synonymous_variant | 0.25 |
gyrA | 8366 | c.1065G>C | synonymous_variant | 0.25 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.29 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.25 |
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.25 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.29 |
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.29 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.33 |
gyrA | 8780 | p.Asp493Glu | missense_variant | 1.0 |
gyrA | 8786 | c.1485T>C | synonymous_variant | 0.33 |
ccsA | 620129 | p.Gly80Ala | missense_variant | 1.0 |
ccsA | 620703 | c.813G>C | synonymous_variant | 0.29 |
ccsA | 620710 | p.Val274Ile | missense_variant | 0.25 |
ccsA | 620718 | c.828G>C | synonymous_variant | 0.25 |
ccsA | 620721 | c.831G>C | synonymous_variant | 0.25 |
ccsA | 620730 | c.840C>T | synonymous_variant | 0.17 |
ccsA | 620733 | c.843G>C | synonymous_variant | 0.17 |
ccsA | 620734 | c.844C>A | synonymous_variant | 0.17 |
ccsA | 620739 | c.849A>G | synonymous_variant | 0.18 |
ccsA | 620745 | c.855G>C | synonymous_variant | 0.2 |
ccsA | 620748 | c.858T>A | synonymous_variant | 0.2 |
ccsA | 620778 | c.888T>C | synonymous_variant | 0.2 |
ccsA | 620784 | c.894C>G | synonymous_variant | 0.22 |
ccsA | 620787 | c.897C>G | synonymous_variant | 0.22 |
ccsA | 620809 | c.919C>T | synonymous_variant | 0.25 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.22 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.25 |
rpoB | 760514 | c.708C>T | synonymous_variant | 0.22 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.22 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.25 |
rpoB | 760533 | p.Val243Thr | missense_variant | 0.25 |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.3 |
rpoB | 760563 | p.Arg253Met | missense_variant | 0.33 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.3 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.33 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.38 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.38 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.29 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.29 |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.25 |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.25 |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.25 |
rpoB | 760718 | c.912C>G | synonymous_variant | 0.29 |
rpoB | 760721 | c.915C>G | synonymous_variant | 0.29 |
rpoB | 760724 | c.918T>C | synonymous_variant | 0.29 |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.29 |
rpoB | 760751 | c.945G>C | synonymous_variant | 0.29 |
rpoB | 760757 | c.951T>C | synonymous_variant | 0.29 |
rpoB | 760759 | p.Val318Ala | missense_variant | 0.29 |
rpoB | 760763 | c.957C>T | synonymous_variant | 0.25 |
rpoB | 760769 | c.963C>G | synonymous_variant | 0.29 |
rpoB | 760775 | c.969G>C | synonymous_variant | 0.29 |
rpoB | 760776 | c.970_972delTCGinsAGC | synonymous_variant | 0.29 |
rpoB | 760793 | c.987A>G | synonymous_variant | 0.33 |
rpoB | 760805 | c.999G>C | synonymous_variant | 0.33 |
rpoB | 760817 | c.1011A>G | synonymous_variant | 0.4 |
rpoB | 760820 | c.1014T>C | synonymous_variant | 0.4 |
rpoB | 760826 | c.1020C>G | synonymous_variant | 0.4 |
rpoB | 760830 | c.1024T>C | synonymous_variant | 0.4 |
rpoB | 760845 | p.Thr347Pro | missense_variant | 0.4 |
rpoB | 761094 | c.1288C>T | synonymous_variant | 0.29 |
rpoB | 761097 | c.1291_1292delAGinsTC | synonymous_variant | 0.29 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.29 |
rpoB | 761126 | c.1320G>T | synonymous_variant | 0.27 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.27 |
rpoB | 761133 | p.Leu443Ile | missense_variant | 0.33 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.5 |
rpoB | 761151 | p.Leu449Val | missense_variant | 0.3 |
rpoB | 761156 | c.1350G>C | synonymous_variant | 0.27 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.27 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.45 |
rpoB | 761168 | c.1362C>G | synonymous_variant | 0.45 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.18 |
rpoB | 761178 | p.Ser458Thr | missense_variant | 0.27 |
rpoB | 761183 | c.1377T>G | synonymous_variant | 0.27 |
rpoB | 761189 | c.1383T>G | synonymous_variant | 0.33 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.25 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.25 |
rpoB | 761196 | p.Leu464Phe | missense_variant | 0.25 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.23 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.23 |
rpoB | 761213 | c.1407G>A | synonymous_variant | 0.23 |
rpoB | 761220 | p.Ser472Thr | missense_variant | 0.25 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.27 |
rpoB | 761235 | p.Met477Val | missense_variant | 0.18 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.22 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.25 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.33 |
rpoB | 761845 | p.Gln680Arg | missense_variant | 1.0 |
rpoC | 764401 | c.1032C>T | synonymous_variant | 0.43 |
rpoC | 764404 | c.1035C>T | synonymous_variant | 0.43 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.67 |
rpoC | 764419 | c.1050C>T | synonymous_variant | 0.43 |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.43 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.57 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.43 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.38 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.5 |
rpoC | 764451 | p.Gly361Ala | missense_variant | 0.38 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.43 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 0.43 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.38 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 0.38 |
rpoC | 764479 | c.1110G>A | synonymous_variant | 0.43 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.38 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.22 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.33 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.33 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.43 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.43 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.57 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.33 |
rpoC | 764720 | c.1351C>T | synonymous_variant | 0.4 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.5 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.4 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.4 |
rpoC | 765287 | c.1918C>T | synonymous_variant | 0.25 |
rpoC | 765292 | c.1923G>T | synonymous_variant | 0.25 |
rpoC | 765298 | c.1929G>C | synonymous_variant | 0.25 |
rpoC | 765300 | p.Val644Ala | missense_variant | 0.25 |
rpoC | 765319 | c.1950A>G | synonymous_variant | 0.29 |
rpoC | 765326 | p.His653Ala | missense_variant | 0.25 |
rpoC | 765330 | p.Ser654Asn | missense_variant | 0.25 |
rpoC | 765349 | c.1980T>C | synonymous_variant | 0.22 |
rpoC | 765352 | c.1983G>C | synonymous_variant | 0.25 |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.22 |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.2 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.18 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.17 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.29 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.29 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.25 |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.25 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.29 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.33 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.18 |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.18 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.27 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.22 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.22 |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.22 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.25 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.31 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.31 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.27 |
rpoC | 766978 | c.3609C>G | synonymous_variant | 0.27 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.22 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.22 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.3 |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.33 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.25 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.25 |
rpoC | 767074 | c.3705T>C | synonymous_variant | 0.4 |
rpsL | 781793 | c.234G>C | synonymous_variant | 0.4 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.43 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.43 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.43 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.43 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.43 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.43 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.43 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.43 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.43 |
rplC | 800937 | c.129A>G | synonymous_variant | 1.0 |
fbiC | 1303584 | c.654C>G | synonymous_variant | 0.43 |
fbiC | 1303590 | c.660A>G | synonymous_variant | 0.43 |
fbiC | 1303602 | c.672A>G | synonymous_variant | 0.43 |
fbiC | 1303605 | c.675C>G | synonymous_variant | 0.43 |
fbiC | 1303608 | c.678G>A | synonymous_variant | 0.43 |
fbiC | 1303611 | c.681G>C | synonymous_variant | 0.43 |
fbiC | 1303614 | c.684C>T | synonymous_variant | 0.43 |
fbiC | 1303617 | c.687C>G | synonymous_variant | 0.43 |
fbiC | 1303632 | c.702T>G | synonymous_variant | 0.6 |
fbiC | 1303638 | c.708A>G | synonymous_variant | 0.5 |
fbiC | 1303653 | c.723G>C | synonymous_variant | 0.5 |
fbiC | 1303659 | c.729T>C | synonymous_variant | 0.43 |
fbiC | 1303660 | p.Val244Thr | missense_variant | 0.43 |
fbiC | 1303674 | c.744C>G | synonymous_variant | 0.44 |
fbiC | 1303686 | c.756C>G | synonymous_variant | 0.44 |
fbiC | 1303695 | c.765T>C | synonymous_variant | 0.4 |
fbiC | 1303708 | c.778T>C | synonymous_variant | 0.36 |
fbiC | 1303728 | c.798G>A | synonymous_variant | 0.3 |
fbiC | 1303730 | p.Leu267Pro | missense_variant | 0.22 |
fbiC | 1303732 | p.Ser268Ala | missense_variant | 0.22 |
fbiC | 1303737 | c.807G>A | synonymous_variant | 0.22 |
fbiC | 1303746 | c.816T>C | synonymous_variant | 0.18 |
fbiC | 1303749 | c.819G>C | synonymous_variant | 0.18 |
fbiC | 1303752 | c.822A>G | synonymous_variant | 0.18 |
fbiC | 1303755 | c.825T>C | synonymous_variant | 0.18 |
fbiC | 1303836 | c.906G>C | synonymous_variant | 0.22 |
fbiC | 1303845 | c.915C>G | synonymous_variant | 0.3 |
fbiC | 1303846 | p.Phe306Val | missense_variant | 0.3 |
fbiC | 1303854 | c.924T>C | synonymous_variant | 0.3 |
fbiC | 1303860 | c.930A>C | synonymous_variant | 0.27 |
fbiC | 1303881 | c.951G>C | synonymous_variant | 0.33 |
fbiC | 1303884 | c.954T>G | synonymous_variant | 0.33 |
fbiC | 1303911 | c.981G>C | synonymous_variant | 0.3 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.3 |
fbiC | 1303920 | c.990C>G | synonymous_variant | 0.27 |
fbiC | 1303923 | c.993C>T | synonymous_variant | 0.27 |
fbiC | 1303929 | c.999G>C | synonymous_variant | 0.27 |
fbiC | 1303947 | c.1017T>C | synonymous_variant | 0.25 |
fbiC | 1303948 | p.Gly340Arg | missense_variant | 0.25 |
fbiC | 1303969 | p.Val347Ile | missense_variant | 0.2 |
fbiC | 1303973 | p.Gly348Ala | missense_variant | 0.2 |
fbiC | 1303995 | c.1065C>T | synonymous_variant | 0.22 |
fbiC | 1304001 | c.1071C>G | synonymous_variant | 0.2 |
fbiC | 1304008 | c.1078T>C | synonymous_variant | 0.25 |
fbiC | 1304034 | c.1104A>G | synonymous_variant | 0.25 |
fbiC | 1304040 | c.1110C>G | synonymous_variant | 0.29 |
fbiC | 1304046 | c.1116C>G | synonymous_variant | 0.29 |
fbiC | 1304049 | c.1119T>G | synonymous_variant | 0.29 |
fbiC | 1304058 | c.1128G>A | synonymous_variant | 0.25 |
fbiC | 1304059 | c.1129C>T | synonymous_variant | 0.25 |
fbiC | 1304064 | c.1134G>C | synonymous_variant | 0.25 |
fbiC | 1304067 | c.1137G>C | synonymous_variant | 0.25 |
fbiC | 1304073 | c.1143C>T | synonymous_variant | 0.25 |
fbiC | 1304080 | p.Ala384Ser | missense_variant | 0.25 |
fbiC | 1304091 | p.Asp387Glu | missense_variant | 0.25 |
fbiC | 1304092 | p.Met388Leu | missense_variant | 0.25 |
fbiC | 1304097 | c.1167G>C | synonymous_variant | 0.29 |
atpE | 1461132 | p.Val30Ile | missense_variant | 0.29 |
atpE | 1461149 | c.105T>G | synonymous_variant | 0.25 |
atpE | 1461150 | p.Ile36Val | missense_variant | 0.25 |
atpE | 1461159 | p.Val39Ile | missense_variant | 0.25 |
atpE | 1461185 | c.141G>C | synonymous_variant | 0.33 |
atpE | 1461189 | c.145C>T | synonymous_variant | 0.33 |
atpE | 1461194 | c.150C>T | synonymous_variant | 0.33 |
atpE | 1461197 | c.153A>G | synonymous_variant | 0.33 |
atpE | 1461219 | c.175T>C | synonymous_variant | 0.4 |
atpE | 1461224 | c.180T>C | synonymous_variant | 0.4 |
atpE | 1461233 | c.189A>G | synonymous_variant | 0.33 |
atpE | 1461254 | c.210T>C | synonymous_variant | 0.33 |
rrs | 1472028 | n.183A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472030 | n.185G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472031 | n.186G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472044 | n.199G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473944 | n.287G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473945 | n.288T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474104 | n.447G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474112 | n.455T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474991 | n.1334T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475015 | n.1358C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475592 | n.1935A>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.36 |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.29 |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.4 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.33 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 0.4 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.5 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.5 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.5 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.5 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.5 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.67 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.5 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.5 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.4 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.4 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.4 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.4 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.4 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.33 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.29 |
rpsA | 1834558 | c.1017C>G | synonymous_variant | 0.33 |
rpsA | 1834606 | c.1065C>G | synonymous_variant | 0.4 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.33 |
rpsA | 1834623 | p.Ser361Cys | missense_variant | 0.4 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.4 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.4 |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.5 |
rpsA | 1834669 | c.1128G>C | synonymous_variant | 0.6 |
rpsA | 1834688 | p.Ser383Cys | missense_variant | 0.5 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.33 |
rpsA | 1834733 | p.Ala398Pro | missense_variant | 0.33 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.29 |
rpsA | 1834765 | c.1224A>G | synonymous_variant | 0.33 |
rpsA | 1834780 | c.1239A>G | synonymous_variant | 0.33 |
rpsA | 1834786 | c.1245A>G | synonymous_variant | 0.33 |
rpsA | 1834789 | c.1248T>C | synonymous_variant | 0.33 |
rpsA | 1834792 | c.1251G>C | synonymous_variant | 0.33 |
tlyA | 1918324 | p.Val129Leu | missense_variant | 1.0 |
PPE35 | 2168503 | p.Phe704Leu | missense_variant | 1.0 |
PPE35 | 2168604 | p.Pro670His | missense_variant | 1.0 |
ahpC | 2726771 | c.579T>A | synonymous_variant | 1.0 |
folC | 2746808 | p.Ala264Gly | missense_variant | 1.0 |
Rv2752c | 3067057 | c.-867_-866insG | upstream_gene_variant | 1.0 |
ald | 3087587 | c.769delC | frameshift_variant | 1.0 |
fbiA | 3641252 | p.Thr237Ser | missense_variant | 1.0 |
rpoA | 3877496 | p.Glu338* | stop_gained | 1.0 |
ddn | 3986684 | c.-160G>C | upstream_gene_variant | 1.0 |
clpC1 | 4039268 | c.1437C>G | synonymous_variant | 0.33 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.33 |
embC | 4240480 | c.618G>A | synonymous_variant | 1.0 |
embC | 4240600 | c.738G>C | synonymous_variant | 0.18 |
embC | 4240632 | p.Met257Thr | missense_variant | 0.25 |
embC | 4240642 | c.780G>C | synonymous_variant | 0.4 |
embC | 4240645 | c.783G>C | synonymous_variant | 0.27 |
embC | 4240654 | c.792C>T | synonymous_variant | 0.25 |
embC | 4240657 | c.795G>C | synonymous_variant | 0.25 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.25 |
embC | 4240678 | c.816T>G | synonymous_variant | 0.23 |
embC | 4240685 | p.Thr275Ala | missense_variant | 0.21 |
embC | 4240693 | c.831T>C | synonymous_variant | 0.21 |
embC | 4240706 | p.Val282Thr | missense_variant | 0.21 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.23 |
embC | 4240780 | c.918T>C | synonymous_variant | 0.15 |
embC | 4240783 | c.921G>C | synonymous_variant | 0.17 |
embC | 4240789 | c.927T>C | synonymous_variant | 0.15 |
embC | 4240819 | c.957A>G | synonymous_variant | 0.23 |
embC | 4240825 | c.963G>A | synonymous_variant | 0.25 |
embC | 4240831 | c.969T>G | synonymous_variant | 0.27 |
embC | 4240867 | c.1005T>G | synonymous_variant | 0.23 |
embC | 4240870 | c.1008T>C | synonymous_variant | 0.21 |
embC | 4240879 | c.1017G>C | synonymous_variant | 0.21 |
embC | 4240880 | p.Ala340Thr | missense_variant | 0.21 |
embC | 4240885 | c.1023T>C | synonymous_variant | 0.21 |
embC | 4240919 | c.1057_1059delCTCinsTTG | synonymous_variant | 0.13 |
embC | 4240945 | c.1083T>C | synonymous_variant | 0.17 |
embC | 4240951 | c.1089C>G | synonymous_variant | 0.18 |
embC | 4240954 | p.Ile364Met | missense_variant | 0.18 |
embC | 4240957 | c.1095C>G | synonymous_variant | 0.2 |
embC | 4241023 | c.1161T>G | synonymous_variant | 0.17 |
embC | 4241026 | c.1164C>G | synonymous_variant | 0.17 |
embC | 4241035 | c.1173G>A | synonymous_variant | 0.17 |
embC | 4241671 | c.1809T>G | synonymous_variant | 0.22 |
embC | 4241689 | c.1827G>C | synonymous_variant | 0.17 |
embC | 4241691 | p.Gly610Ala | missense_variant | 0.17 |
embC | 4241695 | c.1833T>G | synonymous_variant | 0.17 |
embC | 4241704 | c.1842C>G | synonymous_variant | 0.15 |
embC | 4241707 | c.1845G>C | synonymous_variant | 0.15 |
embC | 4241713 | c.1851G>C | synonymous_variant | 0.15 |
embC | 4241719 | c.1857G>C | synonymous_variant | 0.15 |
embC | 4241725 | c.1863G>C | synonymous_variant | 0.17 |
embC | 4241727 | p.Phe622Tyr | missense_variant | 0.17 |
embC | 4241741 | p.Val627Leu | missense_variant | 0.17 |
embC | 4241746 | c.1884C>T | synonymous_variant | 0.18 |
embC | 4241747 | p.Val629Leu | missense_variant | 0.18 |
embC | 4241750 | p.Leu630Val | missense_variant | 0.17 |
embC | 4241755 | c.1893C>G | synonymous_variant | 0.17 |
embC | 4241809 | c.1947A>G | synonymous_variant | 0.13 |
embA | 4244410 | p.Trp393Ser | missense_variant | 1.0 |
embB | 4247491 | c.978G>C | synonymous_variant | 0.29 |
embB | 4247497 | c.984T>C | synonymous_variant | 0.29 |
embB | 4247500 | c.987C>G | synonymous_variant | 0.29 |
embB | 4247512 | c.999T>C | synonymous_variant | 0.25 |
embB | 4247716 | c.1203C>G | synonymous_variant | 0.22 |
embB | 4247722 | c.1209G>C | synonymous_variant | 0.18 |
embB | 4247725 | c.1212G>C | synonymous_variant | 0.22 |
embB | 4247729 | p.Gly406Pro | missense_variant | 0.2 |
embB | 4247743 | c.1230C>G | synonymous_variant | 0.2 |
embB | 4247746 | c.1233C>A | synonymous_variant | 0.2 |
embB | 4247773 | c.1260G>A | synonymous_variant | 0.22 |
embB | 4247776 | c.1263G>T | synonymous_variant | 0.22 |
embB | 4247779 | c.1266C>G | synonymous_variant | 0.22 |
embB | 4247785 | c.1272G>C | synonymous_variant | 0.25 |
embB | 4247800 | c.1287A>C | synonymous_variant | 0.22 |
embB | 4247806 | c.1293G>C | synonymous_variant | 0.22 |
embB | 4247819 | p.Val436Ile | missense_variant | 0.2 |
embB | 4247824 | c.1311C>G | synonymous_variant | 0.2 |
embB | 4247830 | c.1317A>C | synonymous_variant | 0.2 |
embB | 4247836 | c.1323A>G | synonymous_variant | 0.2 |
embB | 4247842 | c.1329T>C | synonymous_variant | 0.2 |
embB | 4249447 | c.2934G>A | synonymous_variant | 1.0 |
whiB6 | 4338681 | c.-160A>T | upstream_gene_variant | 1.0 |