Run ID: SRR13861424
Sample name:
Date: 03-04-2023 09:31:24
Number of reads: 189941
Percentage reads mapped: 4.75
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761131 | p.Gly442Glu | missense_variant | 0.31 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8880 | p.Lys527Gln | missense_variant | 0.88 |
gyrA | 9182 | c.1881T>C | synonymous_variant | 0.22 |
gyrA | 9191 | c.1890G>C | synonymous_variant | 0.22 |
gyrA | 9200 | c.1899A>G | synonymous_variant | 0.2 |
gyrA | 9204 | p.Ser635Thr | missense_variant | 0.22 |
gyrA | 9227 | c.1926C>G | synonymous_variant | 0.22 |
gyrA | 9230 | c.1929T>C | synonymous_variant | 0.22 |
gyrA | 9242 | c.1941A>C | synonymous_variant | 0.2 |
gyrA | 9252 | p.Val651Ile | missense_variant | 0.25 |
gyrA | 9275 | c.1974G>A | synonymous_variant | 0.29 |
gyrA | 9278 | c.1977G>C | synonymous_variant | 0.33 |
gyrA | 9281 | c.1980C>G | synonymous_variant | 0.29 |
gyrA | 9284 | c.1983T>C | synonymous_variant | 0.29 |
gyrA | 9291 | c.1990C>T | synonymous_variant | 0.29 |
gyrA | 9296 | c.1995T>C | synonymous_variant | 0.29 |
gyrA | 9304 | p.Gly668Glu | missense_variant | 0.29 |
gyrA | 9311 | c.2010C>T | synonymous_variant | 0.33 |
gyrA | 9323 | c.2022C>G | synonymous_variant | 0.29 |
fgd1 | 490617 | c.-166T>G | upstream_gene_variant | 0.33 |
fgd1 | 491137 | p.Glu119Gln | missense_variant | 0.29 |
fgd1 | 491144 | p.Ala121Glu | missense_variant | 0.29 |
fgd1 | 491166 | c.384G>C | synonymous_variant | 0.25 |
fgd1 | 491181 | c.399T>C | synonymous_variant | 0.25 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.29 |
fgd1 | 491194 | c.412_414delCTAinsTTG | synonymous_variant | 0.29 |
fgd1 | 491202 | c.420G>C | synonymous_variant | 0.29 |
fgd1 | 491203 | p.Gln141Glu | missense_variant | 0.29 |
fgd1 | 491212 | p.Ser144Arg | missense_variant | 0.29 |
fgd1 | 491217 | c.435T>C | synonymous_variant | 0.29 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.38 |
fgd1 | 491241 | p.Asp153Glu | missense_variant | 0.3 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.3 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.3 |
fgd1 | 491286 | c.504G>C | synonymous_variant | 0.25 |
rpoB | 760118 | c.312T>C | synonymous_variant | 0.5 |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.5 |
rpoB | 760130 | p.Asp108Glu | missense_variant | 0.5 |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.5 |
rpoB | 760142 | c.336C>G | synonymous_variant | 0.5 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.5 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.5 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.5 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.29 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.29 |
rpoB | 760972 | p.Arg389Leu | missense_variant | 1.0 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.2 |
rpoB | 761126 | c.1320G>T | synonymous_variant | 0.31 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.31 |
rpoB | 761133 | p.Leu443Ile | missense_variant | 0.36 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.43 |
rpoB | 761151 | p.Leu449Val | missense_variant | 0.29 |
rpoB | 761156 | c.1350G>C | synonymous_variant | 0.29 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.29 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.4 |
rpoB | 761168 | c.1362C>G | synonymous_variant | 0.4 |
rpoB | 761178 | p.Ser458Thr | missense_variant | 0.27 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.24 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.24 |
rpoB | 761196 | p.Leu464Phe | missense_variant | 0.24 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.27 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.29 |
rpoB | 761213 | c.1407G>A | synonymous_variant | 0.29 |
rpoB | 761220 | p.Ser472Thr | missense_variant | 0.31 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.29 |
rpoB | 761235 | p.Met477Val | missense_variant | 0.31 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.18 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.22 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.4 |
rpoC | 762860 | c.-510G>C | upstream_gene_variant | 0.27 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.2 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.22 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.22 |
rpoB | 762888 | p.His1028Asn | missense_variant | 0.2 |
rpoB | 762911 | p.Ile1035Met | missense_variant | 0.2 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.2 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.25 |
rpoB | 762930 | p.Pro1042Ser | missense_variant | 0.18 |
rpoC | 762936 | c.-434_-432delTCGinsAGC | upstream_gene_variant | 0.18 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.18 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.2 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.17 |
rpoC | 762971 | c.-399G>A | upstream_gene_variant | 0.18 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.18 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.27 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.3 |
rpoC | 764401 | c.1032C>T | synonymous_variant | 0.67 |
rpoC | 764404 | c.1035C>T | synonymous_variant | 0.67 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.67 |
rpoC | 764419 | c.1050C>T | synonymous_variant | 0.67 |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.67 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.67 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.67 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.67 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.67 |
rpoC | 764451 | p.Gly361Ala | missense_variant | 0.67 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.67 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 0.67 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.67 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 0.67 |
rpoC | 764479 | c.1110G>A | synonymous_variant | 0.67 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.5 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.5 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.5 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.67 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.67 |
rpoC | 764714 | c.1345C>T | synonymous_variant | 0.25 |
rpoC | 764720 | c.1351C>T | synonymous_variant | 0.25 |
rpoC | 765111 | p.Met581Lys | missense_variant | 1.0 |
rpoC | 765161 | p.Glu598Lys | missense_variant | 0.8 |
rpoC | 765540 | p.Ala724Val | missense_variant | 1.0 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.25 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.29 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.33 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.33 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.33 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.33 |
rpoC | 766009 | c.2640G>C | synonymous_variant | 0.33 |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.33 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.33 |
rpoC | 766043 | p.Gln892Glu | missense_variant | 0.29 |
rpoC | 766054 | c.2685C>G | synonymous_variant | 0.29 |
rpoC | 766069 | c.2700G>A | synonymous_variant | 0.33 |
rpoC | 766082 | p.Ala905Gln | missense_variant | 0.33 |
rpoC | 766096 | c.2727G>C | synonymous_variant | 0.33 |
rpoC | 766105 | c.2736C>T | synonymous_variant | 0.33 |
rpoC | 766129 | c.2760C>G | synonymous_variant | 0.33 |
rpoC | 766135 | c.2766G>A | synonymous_variant | 0.33 |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.29 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.29 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.22 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.22 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.22 |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.22 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.43 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.43 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.43 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.33 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.3 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.2 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.2 |
rpoC | 766588 | c.3219G>A | synonymous_variant | 0.2 |
rpoC | 766591 | c.3222A>G | synonymous_variant | 0.18 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.18 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.17 |
rpoC | 766645 | c.3276A>G | synonymous_variant | 0.17 |
rpoC | 766651 | c.3282T>C | synonymous_variant | 0.15 |
rpoC | 767068 | c.3699G>T | synonymous_variant | 1.0 |
mmpR5 | 778439 | c.-551C>A | upstream_gene_variant | 1.0 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.25 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.22 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.25 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.33 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.33 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.4 |
rpsL | 781793 | c.234G>C | synonymous_variant | 0.33 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.43 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.43 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.33 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.25 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.25 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.29 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.29 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.33 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.33 |
rplC | 801357 | p.His183Gln | missense_variant | 1.0 |
fbiC | 1304229 | c.1301delC | frameshift_variant | 1.0 |
rrs | 1472288 | n.444delT | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674285 | c.84A>G | synonymous_variant | 0.29 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.29 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.29 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.29 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.29 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.29 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.33 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.43 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.43 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.4 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.36 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.3 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.27 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.3 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.33 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.22 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.25 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.22 |
tlyA | 1917929 | c.-11T>C | upstream_gene_variant | 0.29 |
tlyA | 1917943 | p.Ala2Ser | missense_variant | 0.33 |
tlyA | 1917951 | c.12T>C | synonymous_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.33 |
tlyA | 1917981 | c.42G>C | synonymous_variant | 0.4 |
tlyA | 1917989 | p.Ala17Gly | missense_variant | 0.6 |
tlyA | 1917993 | c.54A>G | synonymous_variant | 0.4 |
tlyA | 1917996 | c.57A>G | synonymous_variant | 0.4 |
tlyA | 1917999 | c.60T>C | synonymous_variant | 0.4 |
tlyA | 1918002 | c.63A>G | synonymous_variant | 0.33 |
tlyA | 1918015 | c.76T>C | synonymous_variant | 0.4 |
tlyA | 1918036 | p.Arg33Ser | missense_variant | 0.5 |
tlyA | 1918048 | p.Leu37Met | missense_variant | 0.5 |
ndh | 2102525 | p.Phe173Tyr | missense_variant | 1.0 |
ndh | 2102538 | c.504_505insT | frameshift_variant | 1.0 |
Rv1979c | 2222978 | p.Ile63Phe | missense_variant | 1.0 |
Rv1979c | 2223052 | p.Glu38Val | missense_variant | 1.0 |
pncA | 2289415 | c.-174C>G | upstream_gene_variant | 1.0 |
kasA | 2518057 | c.-58A>C | upstream_gene_variant | 1.0 |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.4 |
kasA | 2518768 | c.654C>G | synonymous_variant | 0.4 |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.33 |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.33 |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.33 |
kasA | 2518799 | p.Pro229Ser | missense_variant | 0.67 |
kasA | 2518822 | c.708C>G | synonymous_variant | 0.4 |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.33 |
kasA | 2518843 | c.729T>C | synonymous_variant | 0.33 |
kasA | 2518855 | c.741C>G | synonymous_variant | 0.29 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.22 |
eis | 2714983 | p.Ala117Glu | missense_variant | 1.0 |
ahpC | 2726579 | c.387T>C | synonymous_variant | 0.4 |
ahpC | 2726591 | c.399C>G | synonymous_variant | 0.5 |
ahpC | 2726593 | p.Val134Ala | missense_variant | 0.5 |
ahpC | 2726600 | c.408T>C | synonymous_variant | 0.4 |
ahpC | 2726612 | c.420C>G | synonymous_variant | 0.33 |
ahpC | 2726638 | p.Ala149Val | missense_variant | 0.33 |
ahpC | 2726645 | c.453C>G | synonymous_variant | 0.33 |
ahpC | 2726657 | c.465A>C | synonymous_variant | 0.33 |
ahpC | 2726669 | p.Asp159Glu | missense_variant | 0.4 |
ahpC | 2726672 | c.480G>A | synonymous_variant | 0.4 |
ahpC | 2726675 | c.483A>G | synonymous_variant | 0.4 |
ahpC | 2726681 | c.489A>G | synonymous_variant | 0.4 |
ahpC | 2726687 | c.495C>G | synonymous_variant | 0.4 |
ahpC | 2726690 | c.498C>T | synonymous_variant | 0.4 |
ahpC | 2726693 | c.501C>G | synonymous_variant | 0.4 |
ahpC | 2726696 | c.504C>G | synonymous_variant | 0.4 |
ahpC | 2726717 | c.525A>G | synonymous_variant | 0.33 |
folC | 2747355 | p.Val82Ile | missense_variant | 0.4 |
folC | 2747359 | c.240C>G | synonymous_variant | 0.4 |
folC | 2747362 | c.237G>C | synonymous_variant | 0.4 |
folC | 2747394 | p.Ile69Val | missense_variant | 0.67 |
folC | 2747395 | c.204T>C | synonymous_variant | 0.67 |
folC | 2747401 | c.198G>C | synonymous_variant | 0.5 |
fprA | 3474209 | p.Glu68Val | missense_variant | 0.33 |
fprA | 3474283 | p.Leu93Val | missense_variant | 0.4 |
fprA | 3474993 | c.987G>C | synonymous_variant | 0.22 |
fprA | 3475014 | p.Asp336Glu | missense_variant | 0.2 |
fprA | 3475015 | p.Gln337Lys | missense_variant | 0.2 |
fprA | 3475019 | p.Ser338Thr | missense_variant | 0.2 |
fprA | 3475022 | p.Gly339Ala | missense_variant | 0.18 |
fprA | 3475036 | p.Val344Thr | missense_variant | 0.17 |
fprA | 3475047 | c.1041A>G | synonymous_variant | 0.23 |
fprA | 3475048 | p.Ile348Val | missense_variant | 0.15 |
fprA | 3475051 | p.Asn349Asp | missense_variant | 0.15 |
fprA | 3475061 | p.Pro352Arg | missense_variant | 0.15 |
fprA | 3475068 | c.1062A>G | synonymous_variant | 0.17 |
fprA | 3475074 | c.1068C>G | synonymous_variant | 0.17 |
fprA | 3475077 | c.1071C>G | synonymous_variant | 0.17 |
fbiA | 3640404 | c.-139C>A | upstream_gene_variant | 1.0 |
fbiB | 3642056 | c.522C>G | synonymous_variant | 1.0 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.5 |
rpoA | 3877967 | p.Thr181Ser | missense_variant | 1.0 |
rpoA | 3877972 | c.535delG | frameshift_variant | 1.0 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.25 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.3 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.3 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.33 |
rpoA | 3878396 | c.112C>T | synonymous_variant | 0.3 |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.3 |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.3 |
rpoA | 3878454 | c.54A>C | synonymous_variant | 0.25 |
rpoA | 3878472 | p.Asp12Glu | missense_variant | 0.2 |
rpoA | 3878478 | c.30C>G | synonymous_variant | 0.2 |
rpoA | 3878490 | c.18C>A | synonymous_variant | 0.2 |
rpoA | 3878496 | c.12A>T | synonymous_variant | 0.2 |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.18 |
clpC1 | 4039268 | c.1437C>G | synonymous_variant | 0.21 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.23 |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.21 |
clpC1 | 4039289 | c.1416T>C | synonymous_variant | 0.23 |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.23 |
clpC1 | 4039298 | c.1407T>C | synonymous_variant | 0.23 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.3 |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.3 |
clpC1 | 4039328 | c.1377A>G | synonymous_variant | 0.3 |
clpC1 | 4039334 | c.1371G>C | synonymous_variant | 0.33 |
clpC1 | 4039337 | p.Thr456Gln | missense_variant | 0.3 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.22 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.22 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.22 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.22 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.25 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 0.29 |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 0.29 |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.25 |
clpC1 | 4039466 | c.1239T>C | synonymous_variant | 0.25 |
clpC1 | 4039469 | c.1236T>C | synonymous_variant | 0.25 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.22 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.22 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.22 |
clpC1 | 4039777 | c.927_928insG | frameshift_variant | 1.0 |
embB | 4247545 | p.Ser344Arg | missense_variant | 1.0 |
aftB | 4268812 | p.Ser9Pro | missense_variant | 1.0 |
ubiA | 4269117 | p.Glu239Asp | missense_variant | 0.33 |
aftB | 4269123 | c.-287T>C | upstream_gene_variant | 0.33 |
ubiA | 4269141 | p.Leu231Val | missense_variant | 0.33 |
aftB | 4269144 | c.-308C>G | upstream_gene_variant | 0.33 |
ubiA | 4269149 | p.Val229Leu | missense_variant | 0.33 |
aftB | 4269183 | c.-347T>C | upstream_gene_variant | 0.4 |