Run ID: SRR1735629
Sample name:
Date: 27-03-2023 09:34:49
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage1.2.2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 1.0 |
lineage1.2.2.2 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.12 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7268 | c.-34C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9768 | p.Gly823Ser | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763816 | c.447C>G | synonymous_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777431 | c.1047_1049delCGC | disruptive_inframe_deletion | 1.0 |
mmpS5 | 779625 | c.-720G>A | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406871 | p.Gly157Asp | missense_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102240 | p.Arg268His | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168742 | p.Gly624Asp | missense_variant | 0.98 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
clpC1 | 4040719 | c.-15A>G | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.99 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267960 | p.Val293Met | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326148 | c.1326G>T | synonymous_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
whiB6 | 4338203 | p.Arg107Cys | missense_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407848 | p.Ala119Thr | missense_variant | 0.99 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |