Run ID: SRR20969615
Sample name:
Date: 13-03-2023 12:48:03
Number of reads: 9864089
Percentage reads mapped: 99.62
Strain: lineage4.4.2;lineage2.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.84 |
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.15 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.83 |
lineage4.4 | Euro-American | S;T | None | 0.17 |
lineage4.4.2 | Euro-American | T1;T2 | None | 0.16 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 0.85 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7581 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8351 | p.Asp350Glu | missense_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.83 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.82 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.86 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.81 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.84 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.81 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.82 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.86 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1673970 | c.-232C>T | upstream_gene_variant | 0.17 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.82 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.82 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.8 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714762 | c.571C>T | synonymous_variant | 0.8 |
eis | 2714846 | p.Val163Ile | missense_variant | 0.8 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448348 | c.-156G>A | upstream_gene_variant | 0.23 |
fprA | 3473996 | c.-10_-9insA | upstream_gene_variant | 1.0 |
whiB7 | 3568629 | c.46_47insCGGT | frameshift_variant | 0.14 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.87 |
panD | 4044052 | p.His77Arg | missense_variant | 0.88 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.86 |
embB | 4246508 | c.-6G>A | upstream_gene_variant | 0.21 |
embB | 4247249 | p.Gly246Arg | missense_variant | 0.14 |
embB | 4248115 | c.1602C>T | synonymous_variant | 0.84 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.8 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 0.14 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.85 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.86 |