Run ID: SRR7131007
Sample name:
Date: 04-04-2023 18:41:52
Number of reads: 9070267
Percentage reads mapped: 99.99
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6391 | c.-911G>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 0.99 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777820 | c.661C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.21 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168651 | p.Leu654Phe | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.18 |
pepQ | 2860399 | p.Arg7Gln | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.24 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.22 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.21 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.21 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |