Rv0001 - c.519C>G


Drug resistance types
65 Sensitive 1 RR-TB 13 HR-TB 3 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 21 Other
lineage Counts
lineage Count
5
lineage4.4.1.2 65
lineage2.1;lineage4.9;lineage6.3 6
lineage4.3.3 1
lineage2.1;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage2.1;lineage4.9 5
lineage2.2.1 2
lineage4.1.1.1 1
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 1
La3;lineage1.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.2.1;lineage4.4.1.2 1
lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.9 1
spoligotype Counts
spoligotype Count
None 105
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1184381 MDR-TB None
SRR6397935 Sensitive lineage4.4.1.2 ca
SRR6397480 Sensitive lineage4.4.1.2 ca
SRR6397678 Sensitive lineage4.4.1.2 ca
SRR6398021 Sensitive lineage4.4.1.2 ca
SRR6398080 Sensitive lineage4.4.1.2 ca
SRR6397508 Sensitive lineage4.4.1.2 ca
SRR6397992 Sensitive lineage4.4.1.2 ca
SRR6397822 Sensitive lineage4.4.1.2 ca
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR6398036 Sensitive lineage4.4.1.2 ca
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6397916 Sensitive lineage4.4.1.2 ca
SRR6458423 HR-TB lineage2.2.1 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
SRR6397637 Sensitive lineage4.4.1.2 ca
SRR3675581 Other lineage2.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6397338 Sensitive lineage4.4.1.2 ca
SRR6397489 Sensitive lineage4.4.1.2 ca
SRR6397707 Sensitive lineage4.4.1.2 ca
SRR6397525 Sensitive lineage4.4.1.2 ca
SRR6397778 Sensitive lineage4.4.1.2 ca
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR6397442 Sensitive lineage4.4.1.2 ca
SRR6397699 Sensitive lineage4.4.1.2 ca
SRR6398009 Sensitive lineage4.4.1.2 ca
SRR6398111 Sensitive lineage4.4.1.2 ca
SRR6397717 Sensitive lineage4.4.1.2 ca
SRR6397983 Sensitive lineage4.4.1.2 ca
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6397560 Sensitive lineage4.4.1.2 ca
SRR6397679 Sensitive lineage4.4.1.2 ca
SRR6397780 Sensitive lineage4.4.1.2 ca
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR6397963 Sensitive lineage4.4.1.2 ca
SRR6397426 Sensitive lineage4.4.1.2 ca
SRR6397683 Sensitive lineage4.4.1.2 ca
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR18213713 HR-TB None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR6397960 Sensitive lineage4.4.1.2 ca
SRR6397970 Sensitive lineage4.4.1.2 ca
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6397666 Sensitive lineage4.4.1.2 ca
SRR6397669 Sensitive lineage4.4.1.2 ca
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6397804 Sensitive lineage4.4.1.2 ca
SRR6397994 Sensitive lineage4.4.1.2 ca
SRR6397636 Sensitive lineage4.4.1.2 ca
SRR6397959 Sensitive lineage4.4.1.2 ca
SRR6397790 Sensitive lineage4.4.1.2 ca
SRR6397373 Sensitive lineage4.4.1.2 ca
SRR6397977 Sensitive lineage4.4.1.2 ca
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR6397457 Sensitive lineage4.4.1.2 ca
SRR6398092 Sensitive lineage4.4.1.2 ca
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
SRR6397459 Sensitive lineage4.4.1.2 ca
SRR6397326 Sensitive lineage4.4.1.2 ca
SRR6397781 Sensitive lineage4.4.1.2 ca
SRR6398014 Sensitive lineage4.4.1.2 ca
SRR6397687 Sensitive lineage4.4.1.2 ca
SRR6398034 HR-TB lineage2.2.1;lineage4.4.1.2 ca
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6397463 Sensitive lineage4.4.1.2 ca
SRR6398015 Sensitive lineage4.4.1.2 ca
SRR6398062 Sensitive lineage4.4.1.2 ca
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6397388 Sensitive lineage4.4.1.2 ca
SRR6397488 Sensitive lineage4.4.1.2 ca
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6397549 Sensitive lineage4.4.1.2 ca
SRR6397745 Sensitive lineage4.4.1.2 ca
SRR6397366 Sensitive lineage4.4.1.2 ca
SRR6398098 Sensitive lineage4.4.1.2 ca
SRR6397360 Sensitive lineage4.4.1.2 ca
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR2027263 Other lineage4 None
SRR6397604 Sensitive lineage4.4.1.2 ca
SRR6397631 Sensitive lineage4.4.1.2 ca
SRR6397681 Sensitive lineage4.4.1.2 ca
SRR6398139 Sensitive lineage4.4.1.2 ca
SRR6789626 Other None
SRR6397644 Sensitive lineage4.4.1.2 None
SRR6397764 Sensitive lineage4.4.1.2 ca
SRR3675524 Other lineage4.9;lineage6.3 None
ERR9117709 Other None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR6398104 Sensitive lineage4.4.1.2 ca
SRR6397538 Sensitive lineage4.4.1.2 ca
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
SRR6398023 Sensitive lineage4.4.1.2 ca