Rv0001 - c.519C>G
Drug resistance types
65 Sensitive
1 RR-TB
12 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.1.2 | 65 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| 5 | |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage2.2.1;lineage4.4.1.2 | 1 |
| lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 65 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6397960 | Sensitive | lineage4.4.1.2 | ca | SRR6397916 | Sensitive | lineage4.4.1.2 | ca | SRR6397549 | Sensitive | lineage4.4.1.2 | ca | SRR6397681 | Sensitive | lineage4.4.1.2 | ca | SRR6397560 | Sensitive | lineage4.4.1.2 | ca | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6398023 | Sensitive | lineage4.4.1.2 | ca | SRR6397678 | Sensitive | lineage4.4.1.2 | ca | SRR6398139 | Sensitive | lineage4.4.1.2 | ca | SRR6397508 | Sensitive | lineage4.4.1.2 | ca | SRR6397959 | Sensitive | lineage4.4.1.2 | ca | SRR6397644 | Sensitive | lineage4.4.1.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR6397687 | Sensitive | lineage4.4.1.2 | ca | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6397457 | Sensitive | lineage4.4.1.2 | ca | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6397525 | Sensitive | lineage4.4.1.2 | ca | SRR6397426 | Sensitive | lineage4.4.1.2 | ca | SRR1184381 | MDR-TB | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None | SRR6397683 | Sensitive | lineage4.4.1.2 | ca | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR6397338 | Sensitive | lineage4.4.1.2 | ca | SRR6397717 | Sensitive | lineage4.4.1.2 | ca | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6397631 | Sensitive | lineage4.4.1.2 | ca | SRR6397326 | Sensitive | lineage4.4.1.2 | ca | SRR6397480 | Sensitive | lineage4.4.1.2 | ca | SRR6397977 | Sensitive | lineage4.4.1.2 | ca | SRR6397360 | Sensitive | lineage4.4.1.2 | ca | SRR6398015 | Sensitive | lineage4.4.1.2 | ca | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6397994 | Sensitive | lineage4.4.1.2 | ca | SRR6397636 | Sensitive | lineage4.4.1.2 | ca | SRR6398034 | HR-TB | lineage2.2.1;lineage4.4.1.2 | ca | SRR6397780 | Sensitive | lineage4.4.1.2 | ca | SRR6397745 | Sensitive | lineage4.4.1.2 | ca | SRR6397679 | Sensitive | lineage4.4.1.2 | ca | SRR6397790 | Sensitive | lineage4.4.1.2 | ca | SRR6398021 | Sensitive | lineage4.4.1.2 | ca | SRR6397764 | Sensitive | lineage4.4.1.2 | ca | SRR6398111 | Sensitive | lineage4.4.1.2 | ca | SRR1184294 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6397604 | Sensitive | lineage4.4.1.2 | ca | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6397666 | Sensitive | lineage4.4.1.2 | ca | SRR6397538 | Sensitive | lineage4.4.1.2 | ca | SRR6397488 | Sensitive | lineage4.4.1.2 | ca | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6397992 | Sensitive | lineage4.4.1.2 | ca | SRR6397935 | Sensitive | lineage4.4.1.2 | ca | SRR6398036 | Sensitive | lineage4.4.1.2 | ca | SRR6397963 | Sensitive | lineage4.4.1.2 | ca | SRR6398092 | Sensitive | lineage4.4.1.2 | ca | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6397778 | Sensitive | lineage4.4.1.2 | ca | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR6397781 | Sensitive | lineage4.4.1.2 | ca | SRR6397970 | Sensitive | lineage4.4.1.2 | ca | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6397442 | Sensitive | lineage4.4.1.2 | ca | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6398098 | Sensitive | lineage4.4.1.2 | ca | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6397388 | Sensitive | lineage4.4.1.2 | ca | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6397373 | Sensitive | lineage4.4.1.2 | ca | SRR6397463 | Sensitive | lineage4.4.1.2 | ca | SRR6397822 | Sensitive | lineage4.4.1.2 | ca | SRR6397707 | Sensitive | lineage4.4.1.2 | ca | SRR6398062 | Sensitive | lineage4.4.1.2 | ca | SRR6397459 | Sensitive | lineage4.4.1.2 | ca | SRR6397637 | Sensitive | lineage4.4.1.2 | ca | SRR6398104 | Sensitive | lineage4.4.1.2 | ca | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6397489 | Sensitive | lineage4.4.1.2 | ca | SRR6397669 | Sensitive | lineage4.4.1.2 | ca | ERR9117709 | Other | None | SRR3675236 | Other | None | SRR6397804 | Sensitive | lineage4.4.1.2 | ca | SRR6397983 | Sensitive | lineage4.4.1.2 | ca | SRR6398009 | Sensitive | lineage4.4.1.2 | ca | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR6398014 | Sensitive | lineage4.4.1.2 | ca | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR6397699 | Sensitive | lineage4.4.1.2 | ca | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR6398080 | Sensitive | lineage4.4.1.2 | ca | SRR6397366 | Sensitive | lineage4.4.1.2 | ca | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
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