Rv0005 - c.1885_1887delTCGinsAC
Drug resistance types
0 Sensitive
4 RR-TB
8 HR-TB
21 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 11 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage1.1 | 1 |
| lineage4.1.2.1 | 3 |
| 3 | |
| lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 3 |
| lineage2.1;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 63 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | SRR1196583 | Other | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None |
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