lineage | Count |
---|---|
lineage2.2.1 | 17 |
lineage3 | 35 |
lineage4.3.3 | 9 |
lineage4 | 1 |
lineage4.1.2.1 | 2 |
lineage4.4.1.1 | 3 |
lineage2.2.2 | 2 |
lineage2.2.1.1 | 3 |
lineage4.4.2 | 2 |
lineage4.1.1 | 2 |
lineage4.3.2.1 | 6 |
lineage1.2.2.2 | 1 |
lineage4.9;lineage4.3.4.1 | 1 |
lineage4.3.4.2 | 3 |
lineage4.1.3 | 1 |
lineage4.4.1.1;lineage4.3.4.2.1 | 1 |
lineage4.6.2.2 | 2 |
lineage3.1.2 | 2 |
lineage4.3.4.1 | 3 |
lineage4.4.1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 97 |
ID | Drug resistance | Lineage | Country iso2 | ERR11082018 | MDR-TB | lineage2.2.1 | None | SAMN02585958 | Pre-XDR-TB | lineage2.2.1 | za | ERR11138626 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275357 | RR-TB | lineage3 | nl | ERR4813647 | Pre-XDR-TB | lineage4.3.3 | None | SRR3732654 | RR-TB | lineage4 | None | ERR2510582 | MDR-TB | lineage3 | pk | ERR2510573 | MDR-TB | lineage3 | pk | ERR2510581 | MDR-TB | lineage3 | pk | ERR2514983 | MDR-TB | lineage3 | gb | ERR2510285 | MDR-TB | lineage3 | pk | ERR2510415 | MDR-TB | lineage3 | pk | SAMEA2534798 | MDR-TB | lineage2.2.1 | uz | ERR2510292 | Pre-XDR-TB | lineage3 | pk | ERR2510475 | RR-TB | lineage3 | pk | ERR3148205 | RR-TB | lineage4.1.2.1 | mx | ERR2514729 | MDR-TB | lineage3 | None | ERR2516878 | MDR-TB | lineage3 | gb | ERR2446418 | RR-TB | lineage3 | nl | ERR2706972 | MDR-TB | lineage4.3.3 | cd | ERR2653130 | MDR-TB | lineage4.4.1.1 | None | ERR2516874 | MDR-TB | lineage3 | gb | ERR2517605 | RR-TB | lineage3 | nl | ERR4831482 | MDR-TB | lineage3 | None | ERR2707146 | MDR-TB | lineage4.3.3 | cd | ERR4829142 | Pre-XDR-TB | lineage2.2.1 | pk | SRR6152899 | MDR-TB | lineage2.2.2 | ca | ERR3132095 | MDR-TB | lineage3 | None | ERR4831477 | MDR-TB | lineage3 | None | ERR4831480 | Pre-XDR-TB | lineage3 | None | ERR2707030 | MDR-TB | lineage4.3.3 | cd | ERR4831478 | MDR-TB | lineage3 | pk | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831479 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034587 | Pre-XDR-TB | lineage3 | pk | SRR6824484 | XDR-TB | lineage4.4.2 | cn | SRR7341655 | MDR-TB | lineage4.4.1.1 | ro | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR9971229 | RR-TB | lineage4.3.2.1 | None | ERR1034582 | Pre-XDR-TB | lineage3 | pk | SRR6896550 | MDR-TB | lineage4.3.2.1 | None | SRR6964546 | Pre-XDR-TB | lineage3 | None | SRR6824666 | MDR-TB | lineage2.2.1 | cn | SRR7585395 | MDR-TB | lineage1.2.2.2 | in | SRR9971144 | RR-TB | lineage2.2.1 | None | ERR3287777 | MDR-TB | lineage4.9;lineage4.3.4.1 | None | ERR1034616 | Pre-XDR-TB | lineage3 | pk | ERR10748289 | MDR-TB | lineage2.2.1.1 | None | ERR1213870 | MDR-TB | lineage4.3.4.2 | None | ERR1034615 | Pre-XDR-TB | lineage3 | pk | ERR1034605 | Pre-XDR-TB | lineage3 | pk | ERR10680112 | MDR-TB | lineage4.1.3 | None | ERR4799249 | Pre-XDR-TB | lineage3 | in | ERR4020182 | MDR-TB | lineage4.4.1.1;lineage4.3.4.2.1 | None | ERR4423615 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR4797844 | Pre-XDR-TB | lineage3.1.2 | in | ERR4797937 | Pre-XDR-TB | lineage3 | in | ERR4020189 | MDR-TB | lineage4.4.1.1 | None | ERR4798283 | Pre-XDR-TB | lineage3.1.2 | in | ERR4810962 | MDR-TB | lineage2.2.1 | cn | ERR4799787 | MDR-TB | lineage3 | None | ERR5865927 | MDR-TB | lineage4.3.3 | None | ERR4811297 | Pre-XDR-TB | lineage2.2.1 | cn | ERR688019 | Pre-XDR-TB | lineage3 | None | ERR5866453 | MDR-TB | lineage4.3.3 | None | ERR5987458 | MDR-TB | lineage4.3.4.2 | None | ERR688048 | Pre-XDR-TB | lineage3 | None | ERR688014 | Pre-XDR-TB | lineage3 | None | ERR688037 | Pre-XDR-TB | lineage3 | None | ERR7910874 | MDR-TB | lineage4.3.3 | pe | ERR7737791 | MDR-TB | lineage2.2.1.1 | None | ERR688047 | Pre-XDR-TB | lineage3 | None | ERR7910853 | MDR-TB | lineage4.3.4.1 | pe | ERR8665607 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774232 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR9029846 | MDR-TB | lineage4.3.4.1 | None | SRR10397102 | MDR-TB | lineage4.3.3 | None | ERR9119741 | MDR-TB | lineage4.3.4.2 | None | SRR10315691 | RR-TB | lineage4.3.2.1 | None | SRR10315688 | RR-TB | lineage4.3.2.1 | None | SRR10315689 | RR-TB | lineage4.3.2.1 | None | SRR1180173 | Pre-XDR-TB | lineage2.2.1 | None | SRR10525360 | MDR-TB | lineage4.1.2.1 | None | SRR1169211 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR14088367 | MDR-TB | lineage3 | None | SRR1181238 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183082 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181385 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370507 | MDR-TB | lineage4.3.4.1 | None | SRR16370488 | MDR-TB | lineage4.3.3 | None | SRR14088385 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316185 | MDR-TB | lineage4.4.2 | None | SRR18213913 | MDR-TB | lineage3 | None | SRR18714876 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None |
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