SRR25206915
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866026
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798246
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR1167272
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4828984
|
MDR-TB
|
lineage4.1.2.1
|
it
|
SAMN02585990
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR5338514
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SAMN02403524
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR21887754
|
MDR-TB
|
lineage4.5
|
None
|
SRR5709883
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR2515410
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR28394069
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR11488478
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4828836
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831602
|
MDR-TB
|
lineage2.1
|
vn
|
ERR2516569
|
MDR-TB
|
lineage4.3.3
|
nl
|
SRR1165268
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13260862
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13261317
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4828835
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13291080
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SAMN02350489
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
SAMN02403565
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1169275
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11043463
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172253
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28393310
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR11828978
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR1165623
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4830533
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR13288750
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13289262
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13285169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1196785
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29051208
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR9992836
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833135
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13266597
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1196569
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315725
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971275
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28393357
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR11775620
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10040232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289018
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR671845
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR6831770
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350484
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SAMN02403507
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR7911199
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR11349156
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1196580
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4830798
|
MDR-TB
|
lineage4.2.2.2
|
et
|
SRR15368789
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350471
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR4024834
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR10040246
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796997
|
MDR-TB
|
lineage3
|
in
|
SRR1723430
|
MDR-TB
|
lineage2.2.2
|
cn
|
SRR1165619
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971360
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167357
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1172365
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
ERR4797720
|
XDR-TB
|
lineage3
|
in
|
ERR7911286
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
SAMN02403562
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1173212
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR21277573
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3148173
|
MDR-TB
|
lineage4.1.1.3
|
mx
|
SRR24710102
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11348143
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR10040219
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403548
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR10828630
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350443
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR847795
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1165643
|
HR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
SRR1173087
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167393
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7592353
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR30180377
|
MDR-TB
|
lineage4.5
|
None
|
ERR4830473
|
MDR-TB
|
lineage4.9
|
za
|
SRR1167251
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR924241
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR21576640
|
MDR-TB
|
lineage4.5
|
None
|
ERR9992624
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2041692
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02053775
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR10748423
|
MDR-TB
|
lineage4.1.1.2
|
None
|
SRR847802
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR2516724
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR1175329
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167292
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167339
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971284
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971282
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR16058413
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SAMN02585988
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29017170
|
RR-TB
|
lineage3
|
None
|
ERR7737795
|
MDR-TB
|
lineage4.9.1
|
None
|
SRR7585431
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4811159
|
RR-TB
|
lineage4.2.2
|
cn
|
SRR11662441
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR2516499
|
Pre-XDR-TB
|
lineage4.1.1
|
pe
|
SRR1169245
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7131120
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28394014
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
SRR5709897
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SAMN02403544
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1173320
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR5709898
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR3170414
|
MDR-TB
|
lineage5.1
|
gh
|
SAMN02586054
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR833109
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1184313
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR5866027
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9993113
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR7911635
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9993236
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1184354
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR9124924
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11082575
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02403552
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR13276361
|
MDR-TB
|
lineage4.8
|
None
|
ERR067679
|
MDR-TB
|
lineage4.3.3
|
ru
|
SRR10315642
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6824345
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR9971348
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4800568
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR10610070
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29273768
|
XDR-TB
|
lineage4.8
|
None
|
ERR11488337
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167293
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11662590
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677415
|
MDR-TB
|
lineage4
|
de
|
SRR1165687
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
SRR1165648
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11773722
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28393580
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR13261230
|
Pre-XDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR28394261
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR1173226
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28394204
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR11775612
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28393904
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3273214
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393663
|
MDR-TB
|
lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2
|
None
|
ERR7162975
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772533
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR10040499
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232626
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1019159
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1062850
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13284829
|
RR-TB
|
lineage4.8
|
None
|
SRR10040514
|
MDR-TB
|
lineage4.5
|
None
|
SRR5153709
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592386
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR833076
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11828991
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR16115035
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169240
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4553844
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4829045
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4829199
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR8975003
|
MDR-TB
|
lineage2.2.1;lineage4.4.1.1.1
|
None
|
ERR8975942
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2516713
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR1167312
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1723486
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274126
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4828838
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR23310921
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515265
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1167361
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3148183
|
MDR-TB
|
lineage4.1.1.3
|
mx
|
ERR3148222
|
Pre-XDR-TB
|
lineage4.1.1.3
|
mx
|
ERR9993118
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02586025
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR13260133
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR13284987
|
MDR-TB
|
lineage4.8
|
None
|
SRR833030
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833119
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11349210
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11466405
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1140957
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169160
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11082922
|
MDR-TB
|
lineage4.8
|
None
|
SRR1173270
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29016788
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR11662707
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971376
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11488347
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403466
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR10315733
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11348141
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR11349171
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403586
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1196528
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1140945
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169059
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167390
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11828977
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR10315636
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1019150
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10040208
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18054802
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10315580
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315641
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13264955
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR10305988
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488583
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR6865349
|
RR-TB
|
lineage4.3.4.2
|
None
|
ERR983253
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4811369
|
MDR-TB
|
lineage4.5
|
cn
|
ERR2510527
|
MDR-TB
|
lineage4.2.2.2
|
pk
|
SRR1173522
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173040
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN01925676
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165651
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4796895
|
MDR-TB
|
lineage3
|
in
|
ERR7737932
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4830517
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR10315586
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02350480
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR11488735
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6856113
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10303294
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11349154
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173154
|
MDR-TB
|
lineage4.3.3;lineage4.4.1.1.1
|
None
|
SAMN02403502
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR15014781
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SAMN02403563
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1165305
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315727
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR551529
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR15014681
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR6511611
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR18912066
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR21887771
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971190
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3287731
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR1140926
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403547
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02586023
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR3639825
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1173333
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1184352
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6831995
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR832988
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR998857
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1165664
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02350490
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR13286200
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4827988
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040416
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833139
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2516597
|
XDR-TB
|
lineage4.1.2.1
|
pe
|
SRR1172753
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971283
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1723487
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172233
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2516047
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR983252
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR7737714
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3275874
|
MDR-TB
|
lineage3
|
nl
|
SRR6982529
|
MDR-TB
|
lineage4.9.1
|
None
|
SRR832993
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833098
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29289202
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR3148154
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR6865351
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR9971287
|
MDR-TB
|
lineage4.3.2.1;lineage4.4.1.1.1
|
None
|
ERR11043277
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11069080
|
MDR-TB
|
lineage3
|
None
|
SAMN01828244
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1165647
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6855861
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4799708
|
MDR-TB
|
lineage3
|
in
|
SRR28394138
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR2516698
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR5897098
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1165676
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11081998
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11349161
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR10748471
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR21277858
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1019165
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3148151
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SAMN02586001
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR4799666
|
MDR-TB
|
lineage3.1.2
|
in
|
SRR11348147
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5897100
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1167363
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833132
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9738557
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR11033736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165706
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165721
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
SRR1167354
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1172221
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29016873
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR11342639
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29289201
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR2024922
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR7737749
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR7737941
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR924236
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR983254
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR28467049
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28394050
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR9971068
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR5710021
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR6964501
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR5897088
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1165702
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR13288980
|
MDR-TB
|
lineage4.8
|
None
|
SRR28741144
|
MDR-TB
|
lineage4.5
|
None
|
ERR7737922
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6797646
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1169199
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11488590
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28394179
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR11662697
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage4.2.2
|
None
|
SRR1167365
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
SRR1173607
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165703
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02053778
|
MDR-TB
|
lineage4.1.1.3
|
za
|
SAMN02403503
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1165650
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173102
|
HR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1175337
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR7821131
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173145
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11082700
|
RR-TB
|
lineage4.8
|
None
|
SRR21686600
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR11349199
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02586015
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SAMN03246245
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1167364
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315585
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315660
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1172259
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833148
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4813123
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
ERR5918146
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR9993258
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1140929
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2653123
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR25515360
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4830525
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR3273203
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4799687
|
MDR-TB
|
lineage3
|
in
|
ERR11775049
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173397
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR28394037
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
SAMN02053797
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR22536476
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10315581
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315700
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1166328
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
SAMN02053790
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR21691144
|
MDR-TB
|
lineage3
|
None
|
ERR4553431
|
RR-TB
|
|
None
|
ERR9992641
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315702
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4799653
|
MDR-TB
|
lineage3
|
in
|
SRR6256976
|
Pre-XDR-TB
|
lineage4.2.1
|
ru
|
SRR1169176
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR16088478
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1172276
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1175359
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1196570
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3014593
|
Pre-XDR-TB
|
lineage4.3.1
|
tn
|
SRR15014747
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1173855
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR10680139
|
RR-TB
|
lineage5.1.3
|
None
|
SRR1169287
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29081000
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR10315644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403519
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR11488647
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167385
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02585983
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR9971163
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6824346
|
MDR-TB
|
lineage2.2.2
|
cn
|
SRR1173300
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403551
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR1168964
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11082819
|
MDR-TB
|
lineage4.8
|
None
|
ERR7911210
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR3273134
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172781
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7765350
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1175305
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173144
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169168
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1.1
|
None
|
SRR1169312
|
HR-TB
|
lineage4.4.1.1.1
|
None
|
ERR7911285
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
ERR760596
|
MDR-TB
|
lineage4.1.2.1.1
|
ar
|
SRR1169262
|
HR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11049054
|
MDR-TB
|
lineage1.2.2.1
|
None
|
ERR2307518
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315648
|
MDR-TB
|
lineage4.9
|
None
|
ERR2041693
|
MDR-TB
|
lineage4.1.2.1
|
rs
|
ERR4024954
|
RR-TB
|
lineage4.3.4.2
|
None
|
SAMN02403564
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR4830543
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11349178
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165250
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1184347
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1166208
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
SRR1173181
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1173364
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN01925684
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1140934
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1140941
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169162
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167334
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR9992992
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11349160
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR20969991
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971274
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR25207210
|
MDR-TB
|
lineage4.5
|
None
|
ERR9992637
|
XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1019168
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165211
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971340
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR7737691
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR11488427
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR3085322
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9806835
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403518
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
ERR4796289
|
MDR-TB
|
lineage3.1.2
|
None
|
SAMN02350491
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
za
|
SRR10040266
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2516405
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
SRR1019142
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10315726
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11349155
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR21727571
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR18002890
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR11043607
|
MDR-TB
|
lineage4
|
None
|
SRR11349138
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165237
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1167179
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1169211
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165253
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR833065
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29539833
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18715163
|
RR-TB
|
lineage4.8
|
None
|
SAMN02403555
|
MDR-TB
|
lineage4.4.1.1.1
|
sz
|
SRR28119719
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29289200
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR833134
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971067
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2864256
|
MDR-TB
|
lineage4.3.4.2
|
pt
|
ERR108420
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR11342635
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR2653127
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1011479
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1165642
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR10430319
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1750880
|
MDR-TB
|
lineage4.4.1.1.1
|
zw
|
SRR1169221
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1174832
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11828979
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR1184353
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1172876
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SAMN02403543
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|