Run ID: ERR4796895
Sample name:
Date: 01-04-2023 07:11:23
Number of reads: 4038998
Percentage reads mapped: 99.64
Strain: lineage3
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289225 | p.Ile6Thr | missense_variant | 1.0 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
ethA | 4327356 | c.117delA | frameshift_variant | 0.12 | ethionamide, ethionamide |
gid | 4408087 | c.115delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6153 | p.Ala305Val | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7599 | c.301delC | frameshift_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490756 | c.-27T>G | upstream_gene_variant | 0.19 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.4 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 765223 | c.1854G>T | synonymous_variant | 1.0 |
rpoC | 766487 | p.Pro1040Ser | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 778614 | p.Ser98Pro | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416974 | p.Ala125Gly | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473526 | n.-132A>C | upstream_gene_variant | 0.2 |
rrl | 1475778 | n.2121G>T | non_coding_transcript_exon_variant | 0.4 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.2 |
fabG1 | 1673575 | p.His46Tyr | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222873 | p.His98Tyr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.23 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.46 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.5 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474212 | p.Lys69Thr | missense_variant | 0.18 |
fprA | 3474224 | c.223delC | frameshift_variant | 0.11 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.31 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247028 | p.Leu172Pro | missense_variant | 0.15 |
embB | 4247346 | p.Leu278Arg | missense_variant | 0.15 |
embB | 4249778 | p.Trp1089Arg | missense_variant | 1.0 |
aftB | 4267337 | c.1500C>T | synonymous_variant | 1.0 |
aftB | 4267676 | c.1161G>A | synonymous_variant | 0.12 |
ethR | 4328041 | p.Thr165Pro | missense_variant | 0.23 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |