Rv1173 - c.1773C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
3 RR-TB
59 HR-TB
48 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 108 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 129 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR8217914 | MDR-TB | lineage2.2.1 | None | SRR8217912 | HR-TB | lineage2.2.1 | None | SRR26936962 | MDR-TB | lineage2.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR26399647 | MDR-TB | lineage2.2.1 | None | ERR7737845 | MDR-TB | lineage2.2.1 | None | SRR26937011 | MDR-TB | lineage2.2.1 | None | SRR26936953 | MDR-TB | lineage2.2.1 | None | SRR29017287 | HR-TB | lineage2.2.1 | None | SRR1166820 | MDR-TB | lineage2.2.1 | None | SRR30180437 | Pre-XDR-TB | lineage2.2.1 | None | SRR28858670 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251743 | HR-TB | lineage2.2.1 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6397499 | HR-TB | lineage2.2.1 | ca | SRR6397370 | HR-TB | lineage2.2.1 | ca | ERR4832066 | HR-TB | lineage2.2.1 | vn | ERR4828670 | HR-TB | lineage2.2.1 | vn | ERR7911187 | MDR-TB | lineage2.2.1 | vn | ERR7911316 | MDR-TB | lineage2.2.1 | vn | ERR4831776 | MDR-TB | lineage2.2.1 | None | ERR4830329 | MDR-TB | lineage2.2.1 | None | ERR4831881 | HR-TB | lineage2.2.1 | vn | ERR4830444 | HR-TB | lineage2.2.1 | vn | SRR21747031 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284853 | MDR-TB | lineage2.2.1 | None | SRR21732271 | HR-TB | lineage2.2.1 | None | DRR185068 | HR-TB | lineage2.2.1 | vn | DRR185077 | HR-TB | lineage2.2.1 | vn | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | DRR185081 | HR-TB | lineage2.2.1 | vn | DRR185086 | HR-TB | lineage2.2.1 | vn | DRR184632 | MDR-TB | lineage2.2.1 | vn | DRR184641 | HR-TB | lineage2.2.1 | vn | DRR184907 | HR-TB | lineage2.2.1 | vn | DRR184895 | MDR-TB | lineage2.2.1 | vn | DRR184931 | HR-TB | lineage2.2.1 | vn | DRR184946 | HR-TB | lineage2.2.1 | vn | DRR184956 | HR-TB | lineage2.2.1 | vn | DRR184960 | HR-TB | lineage2.2.1 | vn | DRR184963 | HR-TB | lineage2.2.1 | vn | DRR184983 | HR-TB | lineage2.2.1 | vn | DRR185001 | HR-TB | lineage2.2.1 | vn | DRR185005 | HR-TB | lineage2.2.1 | vn | SRR5067520 | HR-TB | lineage2.2.1 | vn | SRR5073982 | MDR-TB | lineage2.2.1 | vn | SRR26937116 | MDR-TB | lineage2.2.1;lineage4 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR26937003 | MDR-TB | lineage2.2.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR26399525 | HR-TB | lineage2.2.1 | None | DRR185056 | HR-TB | lineage2.2.1 | None | SRR26399843 | MDR-TB | lineage2.2.1 | None | SRR24827288 | HR-TB | lineage2.2.1 | None | SRR8217913 | HR-TB | lineage2.2.1 | None | ERR7737699 | MDR-TB | lineage2.2.1 | None | ERR11049129 | HR-TB | lineage2.2.1 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR7737911 | HR-TB | lineage2.2.1 | None | SRR28858726 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR13290582 | MDR-TB | lineage2.2.1 | None | SRR22251424 | HR-TB | lineage2.2.1 | None | ERR13290583 | MDR-TB | lineage2.2.1 | None | ERR11081363 | MDR-TB | lineage2.2.1 | None | SRR28858560 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251228 | HR-TB | lineage2.2.1 | None | SRR26937110 | MDR-TB | lineage2.2.1 | None | ERR7737838 | MDR-TB | lineage2.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR5065436 | HR-TB | lineage2.2.1 | None | SRR26399430 | MDR-TB | lineage2.2.1 | None | SRR26937026 | MDR-TB | lineage2.2.1 | None | ERR13290585 | MDR-TB | lineage2.2.1 | None | SRR26400097 | HR-TB | lineage2.2.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | DRR261048 | HR-TB | lineage2.2.1 | None | SRR6397474 | HR-TB | lineage2.2.1 | ca | DRR454968 | Pre-XDR-TB | lineage2.2.1 | None | SRR6153271 | HR-TB | lineage2.2.1 | ca | SRR6397495 | HR-TB | lineage2.2.1 | ca | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR13439896 | HR-TB | lineage2.2.1 | None | SRR5067549 | HR-TB | lineage2.2.1 | vn | SRR26936989 | MDR-TB | lineage2.2.1;lineage4 | None | SRR5067447 | HR-TB | lineage2.2.1 | vn | SRR5067579 | HR-TB | lineage2.2.1 | vn | DRR454970 | MDR-TB | lineage2.2.1 | None | SRR26936926 | MDR-TB | lineage2.2.1 | None | SRR26937137 | MDR-TB | lineage2.2.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR28858727 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275776 | HR-TB | lineage2.2.1 | nl | ERR13290584 | MDR-TB | lineage2.2.1 | None | SRR26399521 | HR-TB | lineage2.2.1 | None | ERR552551 | HR-TB | lineage2.2.1 | None | SRR1162825 | MDR-TB | lineage2.2.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR22251103 | HR-TB | lineage2.2.1 | None | ERR552549 | HR-TB | lineage2.2.1 | None | SRR29053445 | MDR-TB | lineage2.2.1 | None | ERR11067642 | MDR-TB | lineage2.2.1 | None | SRR26937108 | MDR-TB | lineage2.2.1 | None | SRR21691097 | HR-TB | lineage2.2.1 | None | ERR13291309 | HR-TB | lineage2.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SAMN02414963 | MDR-TB | lineage2.2.1 | se | ERR4831611 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4831929 | HR-TB | lineage2.2.1 | vn | ERR4831940 | MDR-TB | lineage2.2.1 | vn | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SAMEA2534726 | HR-TB | lineage2.2.1 | th | SRR8237384 | HR-TB | lineage2.2.1 | ch | SRR26937129 | MDR-TB | lineage2.2.1 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR9119431 | HR-TB | lineage2.2.1 | None | SRR5067556 | HR-TB | lineage2.2.1 | vn | SRR5073839 | HR-TB | lineage2.2.1 | vn | SRR16370552 | MDR-TB | lineage2.2.1 | None | SRR16089627 | HR-TB | lineage2.2.1 | None | ERR13439880 | HR-TB | lineage2.2.1 | None | SRR16370454 | MDR-TB | lineage2.2.1 | None | ERR9119389 | MDR-TB | lineage2.2.1 | None | ERR552550 | HR-TB | lineage2.2.1 | None | SRR21747043 | Pre-XDR-TB | lineage2.2.1 | None |
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