Rv2428 - c.-81C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
58 HR-TB
166 MDR-TB
64 Pre-XDR-TB
4 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 80 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2.1 | 40 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.1.4 | 4 |
| lineage4.6.2.2 | 4 |
| lineage4.4.2 | 7 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.2 | 4 |
| lineage4.5 | 21 |
| lineage4.6.1.2 | 15 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.8 | 12 |
| lineage3 | 6 |
| lineage4 | 4 |
| lineage3.1.1 | 4 |
| lineage4.3.4.1 | 5 |
| lineage4.9 | 7 |
| lineage2.2.2 | 5 |
| lineage4.1.1.1 | 5 |
| lineage4.2.2.2 | 9 |
| 1 | |
| lineage4.3.2.1 | 2 |
| lineage4.3.3 | 4 |
| lineage4.6.1.1 | 3 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.2.1 | 8 |
| lineage1.1.1.1 | 4 |
| lineage4.2.2 | 2 |
| lineage4.1.1.3 | 5 |
| lineage4.7 | 3 |
| lineage4.4.1.1 | 2 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage6.2.2 | 2 |
| lineage2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1 | 3 |
| lineage4.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.1;lineage4.3.3;lineage4.4.1.1 | 1 |
| lineage4.4 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 292 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12420310 | MDR-TB | lineage2.2.1 | None | ERR4799985 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4872105 | MDR-TB | lineage4.1.2.1 | None | ERR11043212 | HR-TB | lineage4.1.2.1 | None | ERR552874 | MDR-TB | lineage2.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3324351 | HR-TB | lineage4.1.4 | None | SRR1368335 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423615 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR21277270 | MDR-TB | lineage4.4.2 | None | SRR25206927 | XDR-TB | lineage2.2.1 | None | SRR22250018 | HR-TB | lineage1.2.1.2.1 | None | SRR11662456 | MDR-TB | lineage2.2.1 | None | SRR21277359 | HR-TB | lineage4.4.2 | None | SRR29231557 | MDR-TB | lineage4.1.2 | None | SRR1723935 | MDR-TB | lineage4.5 | cn | SRR1723948 | MDR-TB | lineage4.5 | None | ERR2884681 | MDR-TB | lineage4.1.2.1 | None | SRR1723651 | MDR-TB | lineage2.2.1 | cn | ERR1654694 | MDR-TB | lineage4.6.1.2 | None | SRR8651642 | Pre-XDR-TB | lineage4.5 | cn | ERR4827606 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR2653200 | HR-TB | lineage4.8 | None | SRR29231659 | MDR-TB | lineage4.6.1.2 | None | SRR22179513 | HR-TB | lineage3 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277271 | MDR-TB | lineage4.4.2 | None | SRR28646056 | MDR-TB | lineage4.1.2.1 | None | SRR29093126 | MDR-TB | lineage4 | None | ERR13266770 | Pre-XDR-TB | lineage4.8 | None | SRR11972441 | MDR-TB | lineage2.2.1 | None | ERR2884681_ERR2099784 | MDR-TB | lineage4.1.2.1 | None | SRR26331605 | MDR-TB | lineage3.1.1 | None | SRR29051285 | HR-TB | lineage4.3.4.1 | None | SRR20969817 | MDR-TB | lineage2.2.1 | None | ERR13289890 | MDR-TB | lineage4.1.2.1 | None | ERR2497906 | MDR-TB | lineage4.9 | None | ERR4813838 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10040366 | Pre-XDR-TB | lineage2.2.2 | None | SRR3742669 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055596 | MDR-TB | lineage2.2.1 | None | SRR29053405 | HR-TB | lineage4.1.1.1 | None | SRR3742655 | Pre-XDR-TB | lineage2.2.1 | None | SRR29051022 | HR-TB | lineage4.1.4 | None | ERR2497891 | MDR-TB | lineage4.9 | None | SRR29093375 | MDR-TB | lineage4 | None | SRR20969519 | HR-TB | lineage2.2.1.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207366 | MDR-TB | lineage4.5 | None | ERR10748540 | MDR-TB | lineage4.6.1.2 | None | SRR29274166 | HR-TB | lineage4.1.2.1 | None | ERR13267053 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632773 | Pre-XDR-TB | lineage2.2.1 | None | SRR30180246 | MDR-TB | lineage2.2.1 | None | ERR11081608 | MDR-TB | lineage4.1.2.1 | None | ERR2510578 | Pre-XDR-TB | lineage3 | pk | SRR1723747 | MDR-TB | lineage2.2.1 | None | SRR21732671 | HR-TB | lineage3 | None | ERR552873 | MDR-TB | lineage2.2.1 | None | ERR3273147 | MDR-TB | lineage2.2.1.1 | None | SRR29231671 | MDR-TB | lineage4.6.1.2 | None | SRR25206858 | MDR-TB | lineage2.2.1 | None | SRR29273976 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4799394 | HR-TB | lineage4.2.2.2 | in | ERR4796792 | MDR-TB | lineage4.2.2.2 | in | ERR4813831 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13194049 | MDR-TB | lineage2.2.2 | None | ERR2497889 | MDR-TB | lineage4.9 | None | ERR4810795 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583390 | HR-TB | lineage4.1.2.1 | None | SRR11662551 | MDR-TB | lineage2.2.1 | None | ERR2864254 | MDR-TB | lineage4.3.4.1 | pt | ERR4553681 | MDR-TB | None | SRR28646061 | MDR-TB | lineage4.1.2.1 | None | SRR21887785 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044334 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR5918141 | MDR-TB | lineage4.3.2.1 | za | ERR2707142 | MDR-TB | lineage4.6.1.2 | cd | ERR2706993 | MDR-TB | lineage4.6.1.2 | cd | ERR751562 | Pre-XDR-TB | lineage4.3.3 | pe | ERR502932 | MDR-TB | lineage2.2.1 | None | ERR4813903 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4827896 | HR-TB | lineage2.2.1 | None | ERR6358847 | MDR-TB | lineage4.6.1.1 | None | SRR22179517 | HR-TB | lineage3 | None | SRR11662193 | MDR-TB | lineage2.2.1.1 | None | SRR5486894 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR7592355 | Pre-XDR-TB | lineage4.1.4 | None | ERR11489026 | MDR-TB | lineage1.1.3.2 | None | ERR13262171 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR1034816 | MDR-TB | lineage4.3.4.2.1 | pt | ERR5866101 | MDR-TB | lineage4.8 | None | ERR176554 | HR-TB | lineage4.3.4.2.1 | mw | ERR9119622 | MDR-TB | lineage4.6.2.2 | None | ERR2653208 | MDR-TB | lineage4.1.1.1 | None | SRR29772486 | Pre-XDR-TB | lineage4.8 | None | SRR15316583 | MDR-TB | lineage4.5 | None | SRR7592363 | MDR-TB | lineage4.1.2.1 | None | SRR070023 | HR-TB | lineage1.1.1.1 | None | SRR25207357 | Pre-XDR-TB | lineage4.2.2 | None | ERR2497893 | MDR-TB | lineage4.9 | None | ERR4827577 | MDR-TB | lineage2.2.1 | None | ERR9992669 | XDR-TB | lineage3.1.1 | None | SRR20969758 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813647 | Pre-XDR-TB | lineage4.3.3 | None | SRR671727 | MDR-TB | lineage2.2.1 | cn | ERR11081605 | MDR-TB | lineage4.1.2.1 | None | SRR15014747 | MDR-TB | lineage4.2.2.2 | None | ERR9121553 | MDR-TB | lineage4.1.2.1 | None | SRR1723993 | MDR-TB | lineage4.4.2 | cn | SRR29440993 | HR-TB | lineage2.2.1 | None | SRR1723806 | MDR-TB | lineage2.2.1 | cn | SRR1723672 | MDR-TB | lineage2.2.1 | cn | SRR1723906 | MDR-TB | lineage4.5 | cn | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420645 | MDR-TB | lineage2.2.1 | None | SRR1723883 | HR-TB | lineage2.2.1 | cn | SRR1723900 | MDR-TB | lineage4.5 | cn | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR13423594 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592346 | MDR-TB | lineage4.1.2.1 | None | SRR13583386 | HR-TB | lineage4.1.4 | None | ERR8774232 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR25207149 | Pre-XDR-TB | lineage4.5 | None | SAMN03246659 | MDR-TB | lineage4.5 | cn | SRR29017191 | MDR-TB | lineage4.1.1.3 | None | SRR29772599 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR130164 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583419 | MDR-TB | lineage4.7 | None | SRR13583473 | HR-TB | lineage4.1.2.1 | None | ERR12328150 | HR-TB | lineage2.2.1 | None | ERR11773731 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR11044862 | HR-TB | lineage4.2.1 | None | ERR2197000 | HR-TB | lineage4.2.2.2 | None | ERR2497887 | MDR-TB | lineage4.9 | None | ERR13285103 | MDR-TB | lineage4.1.2.1 | None | ERR11043799 | MDR-TB | lineage4.8 | None | ERR13291022 | MDR-TB | lineage1.2.1.2 | None | ERR13260735 | HR-TB | lineage3.1.1 | None | ERR10680134 | MDR-TB | lineage6.2.2 | None | ERR13290903 | MDR-TB | lineage2.1 | None | ERR10680042 | MDR-TB | lineage6.2.2 | None | SRR29274051 | Pre-XDR-TB | lineage4.8 | None | SRR3742656 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510401 | MDR-TB | lineage3 | pk | SRR29050703 | MDR-TB | lineage4.7 | None | SRR29289317 | HR-TB | lineage3 | None | ERR2099781 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR2099789 | MDR-TB | lineage4.1.2.1 | es | ERR2099791 | MDR-TB | lineage4.1.2.1 | es | SAMEA104221066 | MDR-TB | lineage4.1.2.1 | es | ERR2099785 | MDR-TB | lineage4.1.2.1 | es | ERR13259930 | HR-TB | lineage2.2.1 | None | ERR2179733 | MDR-TB | lineage4.5 | cn | ERR4798030 | XDR-TB | lineage1.1.2 | in | SRR15316582 | MDR-TB | lineage4.5 | None | ERR552873_ERR552872_ERR552874 | MDR-TB | lineage2.2.1 | None | SRR069993 | HR-TB | lineage1.1.1.1 | None | ERR4872228 | MDR-TB | lineage4.6.2.2 | None | SRR13423565 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316305 | MDR-TB | lineage2.2.1 | None | SRR6511616 | MDR-TB | lineage4.3.4.1 | None | SRR5709881 | MDR-TB | lineage2.2.1 | th | SRR671784 | Pre-XDR-TB | lineage2.2.1 | cn | SRR069958 | HR-TB | lineage1.1.1.1 | None | ERR2935859 | HR-TB | lineage4.3.4.1 | None | ERR13290920 | MDR-TB | lineage4.5 | None | ERR552176 | HR-TB | lineage2.2.2 | None | ERR552177 | HR-TB | lineage2.2.2 | None | SAMEA2534464 | HR-TB | lineage2.2.2 | kr | ERR4810954 | MDR-TB | lineage2.2.1 | cn | ERR2184208 | HR-TB | lineage4.1.1 | pe | SRR28045565 | Pre-XDR-TB | lineage2.2.1 | None | ERR1193891 | HR-TB | lineage4.3.4.2.1 | sz | ERR040142 | MDR-TB | lineage4.3.4.2.1 | ug | ERR551253 | MDR-TB | lineage4.6.1.2 | cg | ERR2864237 | Pre-XDR-TB | lineage4.3.3 | pt | ERR133981 | MDR-TB | lineage4.2.1.1 | ru | SRR6044999 | MDR-TB | lineage4.1.2.1 | gb | ERR2199989 | HR-TB | lineage4.3.4.2.1 | sz | ERR2041771 | MDR-TB | lineage4.1.2 | rs | ERR2041730 | Pre-XDR-TB | lineage4.8 | rs | SRR8237323 | MDR-TB | lineage2.2.1 | np | SRR6824531 | MDR-TB | lineage4.5 | cn | SRR6824331 | MDR-TB | lineage4.4.2 | cn | SRR6824330 | MDR-TB | lineage4.5 | cn | SRR6824380 | MDR-TB | lineage2.2.1 | cn | SRR6824644 | MDR-TB | lineage2.2.1 | cn | SRR6824642 | MDR-TB | lineage4.4.2 | cn | SRR6824287 | MDR-TB | lineage2.2.1 | cn | SRR6824600 | MDR-TB | lineage2.2.1 | cn | SRR6824485 | MDR-TB | lineage4.5 | cn | SRR15316543 | HR-TB | lineage2.2.1 | None | SRR16149167 | MDR-TB | lineage4 | None | SRR21277183 | HR-TB | lineage2.2.1 | None | SRR4423143 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28119820 | HR-TB | lineage2.2.1 | None | ERR038741 | MDR-TB | lineage4.2.2.2 | ug | ERR040137 | MDR-TB | lineage4.1.1.3 | ug | ERR212122 | HR-TB | lineage4.3.4.2.1 | mw | SRR20969472 | Pre-XDR-TB | lineage2.2.1 | None | SRR24827295 | HR-TB | lineage4.1.1.1 | None | ERR11775054 | HR-TB | lineage3.1.1 | None | SRR29231849 | MDR-TB | lineage4.6.1.2 | None | ERR10748216 | MDR-TB | lineage4.6.1.2 | None | SRR9738535 | MDR-TB | lineage4.1.2.1 | None | SRR19128044 | HR-TB | lineage4.1.1.1 | None | SRR5073939 | HR-TB | lineage1.1.1.1 | vn | ERR4811335 | Pre-XDR-TB | lineage2.2.1 | cn | SRR9613542 | MDR-TB | lineage4.1.2 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | SRR1723947 | MDR-TB | lineage4.5 | None | ERR2515445 | MDR-TB | lineage4.3.2.1 | za | ERR3256222 | HR-TB | lineage1.2.1.2.1 | ph | SRR6930922 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358846 | MDR-TB | lineage4.6.1.1 | None | ERR6358848 | MDR-TB | lineage4.6.1.1 | None | SRR28044403 | MDR-TB | lineage4.2.2.2 | None | SRR10525355 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11050915 | HR-TB | lineage4.2.2.2 | None | ERR776661 | MDR-TB | lineage4.3.2 | None | SRR29273641 | MDR-TB | lineage4.1.2.1 | None | SRR29051262 | HR-TB | lineage4.1.2.1 | None | SRR15506912 | Pre-XDR-TB | lineage2.2.1 | None | SRR5486869 | MDR-TB | lineage4.1.2.1 | None | ERR2179654 | MDR-TB | lineage4.5 | cn | SRR28646053 | MDR-TB | lineage4.1.2.1 | None | ERR2179658 | MDR-TB | lineage4.5 | cn | SRR29051229 | MDR-TB | lineage4.7 | None | ERR2179653 | MDR-TB | lineage4.4.2 | cn | ERR2179641 | MDR-TB | lineage4.5 | cn | ERR2179677 | MDR-TB | lineage4.5 | cn | SRR10808440 | HR-TB | lineage4.1.1 | None | SRR1368332 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316314 | MDR-TB | lineage2.2.1 | None | SRR29440968 | HR-TB | lineage2.2.1 | None | ERR4813672 | MDR-TB | lineage2.2.1;lineage4.3.3;lineage4.4.1.1 | None | SRR29055686 | MDR-TB | lineage2.2.1 | None | ERR9119511 | MDR-TB | lineage4.1.2.1 | None | SRR29055693 | MDR-TB | lineage2.2.1 | None | SRR3742670 | Pre-XDR-TB | lineage2.2.1 | None | SRR6930907 | MDR-TB | lineage2.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285147 | MDR-TB | lineage4.8 | None | ERR2652982 | HR-TB | lineage4.4.1.1 | None | SRR15315964 | Pre-XDR-TB | lineage4.4 | None | ERR2099784 | MDR-TB | lineage4.1.2.1 | None | ERR552872 | MDR-TB | lineage2.2.1 | None | SRR29231793 | MDR-TB | lineage4.6.1.2 | None | ERR4827605 | HR-TB | lineage4.8 | None | SRR25207011 | MDR-TB | lineage2.2.1 | None | ERR6359110 | MDR-TB | lineage4.3.4.2.1 | None | ERR3639820 | MDR-TB | lineage4.1.2.1 | None | ERR2497886 | MDR-TB | lineage4.9 | None | SRR17856658 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132088 | MDR-TB | lineage2.2.1 | None | SRR1368336 | Pre-XDR-TB | lineage2.2.1 | None | SRR29385391 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017192 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29273980 | MDR-TB | lineage4.1.2.1 | None | ERR6358711 | MDR-TB | lineage4.6.1.2 | None | ERR6358840 | MDR-TB | lineage4.6.1.2 | None | ERR5866102 | MDR-TB | lineage4.8 | None | ERR4553506 | MDR-TB | lineage4 | None | SRR1368334 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035296 | HR-TB | lineage4.9 | br | SRR8651589 | Pre-XDR-TB | lineage2.2.1 | cn | ERR718318 | HR-TB | lineage1.1.1 | th | SRR10525324 | MDR-TB | lineage4.8 | None | ERR4810955 | MDR-TB | lineage4.5 | cn | ERR4829863 | MDR-TB | lineage4.4.1.2 | it | SRR2024993 | MDR-TB | lineage2.2.1 | cn | ERR2707099 | MDR-TB | lineage4.6.1.2 | cd | ERR4811321 | XDR-TB | lineage2.2.1 | cn | ERR4811325 | Pre-XDR-TB | lineage4.2.2 | cn | ERR2706920 | MDR-TB | lineage4.6.1.2 | cd | ERR2707000 | MDR-TB | lineage4.1.2 | cd | SRR28046326 | MDR-TB | lineage1.1.3.3 | None | SRR16370294 | HR-TB | lineage4.1.1.1 | None | SAMEA2534973 | MDR-TB | lineage2.2.1 | uz | ERR553208 | MDR-TB | lineage2.2.1 | uz | ERR553226 | MDR-TB | lineage4.1 | None | ERR2516703 | MDR-TB | lineage4.1.1 | nl | ERR2516725 | MDR-TB | lineage4.1.2.1 | nl | SRR25515647 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827859 | HR-TB | lineage4.8 | None | SRR29050650 | HR-TB | lineage4.1.2.1 | None | SRR12420650 | MDR-TB | lineage2.2.1 | None | SRR1368333 | Pre-XDR-TB | lineage2.2.1 | None | ERR1654685 | MDR-TB | lineage4.6.1.2 | None | ERR4553680 | MDR-TB | lineage4.1.1.3 | None | ERR1213858 | MDR-TB | lineage2.2.1 | kr |
|---|
