SRR28351583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351193
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351271
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351489
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045761
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28351547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827635
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR4796917
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797044
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798307
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798563
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799063
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420474
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22137422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28409551
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28045005
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7162973
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800347
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21657635
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827705
|
MDR-TB
|
lineage2.2.1.1;lineage4.3.3
|
None
|
ERR4830919
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR7585440
|
Sensitive
|
lineage2.2.1
|
in
|
ERR13261480
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27450137
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28045664
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830905
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830974
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR16100248
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261528
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827417
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.9
|
None
|
ERR13267115
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044565
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11080904
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251075
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6153185
|
Sensitive
|
lineage2.2.1
|
ca
|
ERR4798900
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR11081560
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4800583
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
ERR4797981
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR9124944
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7162984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827721
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830925
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830935
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4831009
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22137480
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16058382
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16097550
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4798483
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424786
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831020
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267113
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12311970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830939
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13291866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798888
|
Other
|
lineage2.2.1
|
in
|
ERR2513951
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR16103913
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799608
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799632
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799986
|
HR-TB
|
lineage2.2.1;lineage4.8
|
in
|
SRR30182802
|
Other
|
lineage2.2.1
|
None
|
SRR22137415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29231400
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13272791
|
Sensitive
|
lineage2.2.1
|
None
|
ERR551520
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266910
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261383
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29053012
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4799675
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1165376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830928
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13261986
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29772691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797340
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797968
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798950
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267023
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827463
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
SRR8237309
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR13266887
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827305
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796585
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772593
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798665
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798902
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267111
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799255
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266601
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831027
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR11081558
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796898
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798133
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799498
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797859
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797563
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28868609
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266685
|
HR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR13292058
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265943
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251221
|
Other
|
lineage2.2.1
|
None
|
SRR16058135
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13261218
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827700
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798090
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799971
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22250005
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4799027
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4799302
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800558
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266084
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798677
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR18912991
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831028
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13291612
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22175253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799616
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082896
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797208
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13290870
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044429
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29441127
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796513
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262124
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796936
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267746
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4797082
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22249518
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4798393
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22137411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799077
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22251490
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827374
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13265868
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796672
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18897161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831081
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR4797525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797922
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR12796611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR30182511
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9124984
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796922
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7070032
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29230723
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799159
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830991
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424794
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772703
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29231636
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830924
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR29772731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016820
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18149468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830926
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827769
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR13266810
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799026
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29231481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7068977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796636
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796579
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797329
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797428
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800067
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800439
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266574
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796415
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMEA2533997
|
Sensitive
|
lineage2.2.1
|
np
|
ERR4553676
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4796723
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797199
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797174
|
MDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
in
|
ERR11049313
|
Other
|
lineage2.2.1
|
None
|
ERR4798892
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830971
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4831010
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830657
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424821
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9125282
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799724
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800597
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10465997
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827779
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR2704812
|
MDR-TB
|
lineage5.2
|
fr
|
SRR25827756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796960
|
MDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR4797132
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797502
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798498
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799568
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262163
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4818630
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261151
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553937
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796758
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796940
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262046
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13266790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799979
|
HR-TB
|
lineage2.2.1
|
in
|
ERR13292435
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22175225
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799415
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796601
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7517819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827740
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
SRR25827516
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827848
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798775
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798963
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799807
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28046128
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799419
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800304
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830969
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830976
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797555
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797323
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800213
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827345
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
ERR4800513
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798304
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR551519
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797824
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798663
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799409
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799564
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4816871
|
HR-TB
|
lineage2.2.1
|
gb
|
SRR8237314
|
Sensitive
|
lineage2.2.1
|
np
|
ERR4799217
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797399
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799697
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799860
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798814
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799888
|
XDR-TB
|
lineage2.2.1;lineage3
|
in
|
SRR21732180
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21709336
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830938
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830995
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796371
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827458
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR1163462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18593229
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261247
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798116
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798930
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798780
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2513950
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR13266930
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22251163
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830901
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22251675
|
Sensitive
|
lineage2.2.1;lineage3
|
None
|
ERR4799523
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR7162974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10513832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800381
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266595
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797957
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266962
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045933
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261281
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290587
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22249678
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267614
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28858522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798260
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827796
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827617
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3
|
None
|
ERR4796686
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796602
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261158
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22251713
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22250233
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797266
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267132
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267092
|
Other
|
lineage1.1.2;lineage2.2.1
|
None
|
SRR21658625
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827741
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516198
|
Pre-XDR-TB
|
lineage2.2.1
|
be
|
ERR13266419
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261355
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796780
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798798
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796522
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797124
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797192
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.4.2
|
in
|
ERR4796397
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261546
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799701
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796404
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800286
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262165
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13290586
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799755
|
Other
|
lineage2.2.1
|
in
|
ERR4799355
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4814280
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4797856
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13267131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4818464
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4799035
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16058275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827297
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414964
|
Pre-XDR-TB
|
lineage2.2.1
|
se
|
ERR13265238
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831026
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR30182627
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4798698
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13267116
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797489
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798202
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR30182419
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13261077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262105
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8237313
|
Sensitive
|
lineage2.2.1
|
np
|
ERR13266783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8237396
|
Sensitive
|
lineage2.2.1
|
ch
|
ERR13276145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290589
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068484
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831016
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR11044310
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4799341
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR8380932
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797162
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13290856
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796891
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799398
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800512
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799815
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830933
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22175242
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796441
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28868806
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4800000
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4816745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291791
|
Sensitive
|
lineage2.2.1
|
None
|
SRR30182389
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR25827588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044898
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797808
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798550
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799885
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830936
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827413
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR28351573
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7162981
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266739
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR30182673
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22137434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799556
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797097
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
ERR4797596
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799806
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800402
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069307
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830951
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR7517689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830917
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR8237317
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR4798585
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796879
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797516
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798621
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799132
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800546
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796711
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830912
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797113
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800560
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797811
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830660
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830903
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830911
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830937
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796839
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797090
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8773613
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8237319
|
Sensitive
|
lineage2.2.1
|
np
|
SRR22175206
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800477
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797284
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
ERR4830942
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796706
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11044474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798082
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28044450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045218
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797363
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4830929
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4819250
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7069519
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827306
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR16100710
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798948
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796543
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797629
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7162980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276139
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11049611
|
Sensitive
|
lineage4.1.2
|
None
|
ERR4830163
|
MDR-TB
|
lineage2.2.1
|
tj
|
ERR13261496
|
HR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR4796808
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827768
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4
|
None
|
SRR21732485
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22424812
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830985
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13292144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267029
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9117756
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13265825
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797426
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830998
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22251177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772801
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267066
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798693
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797751
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827717
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
SRR28046122
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827626
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261278
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044239
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796377
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827440
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4831066
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR13262064
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830918
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4830987
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797268
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044827
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266947
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800653
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798037
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800248
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797288
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799877
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830914
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2514362
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR25340777
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831030
|
Sensitive
|
lineage2.2.1
|
np
|
ERR4797459
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800166
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827623
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045192
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827690
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798894
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29127033
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266560
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2517038
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4796763
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798689
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827831
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25340861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13292126
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13261154
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796533
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830915
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798787
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261966
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267005
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22251896
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266724
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517090
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR8237330
|
Sensitive
|
lineage2.2.1
|
np
|
ERR13260980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045189
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4797992
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516770
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR25827638
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4800425
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29231198
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797115
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800465
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797051
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4821008
|
Other
|
lineage2.2.1
|
gb
|
ERR4797878
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797523
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21722061
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7162985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045282
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351488
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351435
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045539
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261374
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799316
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799690
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831011
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR28351326
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266661
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830997
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR1167138
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266631
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798403
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798174
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21728159
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29055792
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4799991
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797754
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11043428
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28351425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045263
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827561
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR7069078
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28351478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|