ERR4812517
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29094443
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911362
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287680
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4553809
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR12117997
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13870376
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR6866526
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
ERR11043311
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117990
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13288799
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR7068921
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR12117999
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811293
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR3287678
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813220
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4812323
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11081998
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813193
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813102
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR29385492
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1035074
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR5266538
|
Pre-XDR-TB
|
lineage4.3.3
|
ru
|
ERR12117954
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811724
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10040479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR4423176
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
SRR1166116
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662201
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256091
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1048861
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1165419
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02414991
|
Pre-XDR-TB
|
lineage4.3.3
|
se
|
SRR25207219
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813116
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26399430
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832767
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1367219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN01925685
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13870414
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24256380
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812079
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR12118061
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812856
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118024
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3794376
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813363
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866254
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911381
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681453
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813674
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11798645
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117942
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287728
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28393525
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
ERR9029862
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287663
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13284880
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287364
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813072
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812738
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1048845
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4813734
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813343
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117920
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29124296
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260648
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02584648
|
MDR-TB
|
lineage4.3.3
|
md
|
ERR4829706
|
HR-TB
|
lineage4.3.3
|
it
|
ERR5866255
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910997
|
RR-TB
|
lineage4.3.3
|
pe
|
SAMN02419670
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
by
|
SRR22461691
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR22461634
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10808604
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24255939
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1168995
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393890
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393765
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461708
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393445
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287639
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR833145
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR751581
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29681241
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772400
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29094364
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539448
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539657
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29539718
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539757
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207143
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516401
|
MDR-TB
|
lineage4.7
|
nl
|
ERR6865644
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117956
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117932
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117971
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118044
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118035
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461650
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461652
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461655
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2861376
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
None
|
ERR3287613
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287705
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12118049
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR775369
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812942
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR11043745
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4972486
|
MDR-TB
|
lineage4.3.3
|
None
|
DRR130196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866401
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866440
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3742668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016890
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813694
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13260632
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261619
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256057
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393748
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461675
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081589
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539572
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539550
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461685
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911357
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4024621
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260408
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260152
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813370
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813627
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813645
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN01925620
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762272
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162880
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6832094
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4812981
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
pe
|
ERR11081787
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR12117908
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118057
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29274745
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813163
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR12118011
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081631
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1013545
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4811781
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2600569
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813029
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11043392
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743476
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813436
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287650
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287679
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12117921
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1162728
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16915744
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02380983
|
MDR-TB
|
lineage4.6.1.2
|
ug
|
SRR22461670
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866441
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865966
|
MDR-TB
|
lineage4.8
|
None
|
ERR12118064
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9992787
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR7911361
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799291
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4813164
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4972475
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMEA5569510
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260707
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287676
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR13870386
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR133903
|
MDR-TB
|
lineage4.3.3
|
ru
|
ERR4813304
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3732721
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4276883
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR24799202
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813476
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR6865759
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4178230
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2600522
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1003105
|
RR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR12117935
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16058383
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR10867785
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287683
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10397092
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5709889
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR24828613
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6832014
|
HR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1165606
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10877880
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256314
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR11068257
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18714925
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10762279
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813474
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12118015
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13260706
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16058224
|
MDR-TB
|
lineage3
|
None
|
ERR2600487
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118017
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813134
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29126452
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813577
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR751424
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11488790
|
MDR-TB
|
lineage3
|
None
|
SRR18715471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830329
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341398
|
Pre-XDR-TB
|
lineage3;lineage4.1.1.3
|
in
|
SRR1013561
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1169046
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR5535706
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461703
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813595
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081566
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118016
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118053
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287411
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4829742
|
HR-TB
|
lineage4.3.3
|
None
|
SRR22461628
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287321
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812953
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812810
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11043662
|
RR-TB
|
lineage4.7
|
None
|
SAMN02360560
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR10877866
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461612
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393356
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393450
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28239977
|
MDR-TB
|
lineage4.8
|
None
|
SRR29539380
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539425
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28393456
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461645
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6832075
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393486
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461575
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28394296
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28044699
|
MDR-TB
|
lineage4.9
|
None
|
ERR2184325
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28393845
|
MDR-TB
|
lineage4.3.2;lineage4.3.3
|
None
|
SRR28393500
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260127
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260146
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4024675
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10869496
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29341584
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539368
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR25207028
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR16088079
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866294
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1013562
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR15600351
|
MDR-TB
|
lineage4.8
|
None
|
SRR22461692
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2516778
|
MDR-TB
|
lineage4.3.3
|
gb
|
ERR4812733
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR775302
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1163374
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR3287400
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR3287440
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287496
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812991
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813189
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR8698480
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751363
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2600570
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10869498
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR12118001
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21776300
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13284076
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29081649
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02414992
|
Pre-XDR-TB
|
lineage4.3.3
|
se
|
ERR4553657
|
RR-TB
|
lineage3.1.2.1
|
None
|
ERR4813110
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR13267451
|
MDR-TB
|
lineage4.1.1;lineage4.3.3
|
None
|
SRR22461581
|
MDR-TB
|
lineage4.1.1;lineage4.3.3
|
None
|
SRR22461641
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461661
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13870428
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR17658003
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698492
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461671
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393414
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261653
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284441
|
MDR-TB
|
lineage3
|
None
|
ERR1199120
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR24256007
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812971
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR4813169
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR2600421
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118018
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10828187
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813712
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088419
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1003106
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1654688
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR24256225
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812844
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081637
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1165605
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3082090
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR5865641
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256115
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118033
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812819
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393796
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117910
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117905
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2600523
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261884
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9121303
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5709797
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR18715235
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10869097
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13285145
|
RR-TB
|
lineage4.7
|
None
|
SRR6257042
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539039
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3132092
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4813634
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813628
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813701
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813113
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR16370508
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1162727
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827865
|
Pre-XDR-TB
|
lineage1.1.2;lineage3
|
None
|
ERR13260218
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082562
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751503
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10397266
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813069
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812177
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813670
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461697
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10808424
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751431
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12117903
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118006
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118062
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043128
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2516528
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11773797
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5710009
|
MDR-TB
|
lineage2.2.1
|
th
|
ERR12118027
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMEA5569891
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29231819
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR13260249
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812891
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813112
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR552475
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261705
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13264930
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287748
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813039
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812947
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813401
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813440
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813145
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287317
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118031
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6358840
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR9029868
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR779906
|
MDR-TB
|
lineage4.3.3
|
pe
|
SAMN02360552
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR22424810
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25206954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4024831
|
MDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR29274772
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR12117998
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24828612
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22461686
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10808425
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287726
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287451
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR751564
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13261869
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR3639784
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16370477
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4828878
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812255
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287806
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812359
|
MDR-TB
|
lineage4.1.1;lineage4.3.3
|
pe
|
ERR3287790
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4799203
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4812811
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4827590
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12118046
|
HR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR28393437
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461625
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461682
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28351378
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393522
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260698
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461578
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461694
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6807703
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22461656
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866295
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3335723
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR7517831
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13285169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553832
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR22461601
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539053
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539290
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539411
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29017091
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29538985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12117977
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813201
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR4813695
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260144
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260158
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261702
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866402
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10808586
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10808702
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813037
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813121
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813348
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5709910
|
MDR-TB
|
lineage2.2.1
|
th
|
ERR4872349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261956
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR924209
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068714
|
HR-TB
|
lineage4.3.3
|
None
|
ERR11042999
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287370
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR22461604
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1048862
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR12117913
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21576627
|
MDR-TB
|
lineage2.1
|
None
|
SRR24256080
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR137209
|
MDR-TB
|
lineage4.3.3
|
ru
|
SRR29274781
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287781
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12117958
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7517810
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR24256181
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7910990
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4828005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15661592
|
MDR-TB
|
lineage4.8
|
None
|
ERR12117961
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261581
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2184429
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13284348
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10379910
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4872279
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662203
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1367221
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12118050
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911356
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2184591
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287427
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR4813183
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3132189
|
MDR-TB
|
lineage4.1.4;lineage4.3.3
|
None
|
ERR4813646
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10828617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255885
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
SRR1166305
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865537
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287632
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR8698484
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516255
|
MDR-TB
|
lineage4.1.3
|
be
|
ERR4829011
|
MDR-TB
|
lineage4.3.3
|
it
|
SRR29539044
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081586
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287758
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1062872
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4813244
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR20969884
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910903
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR3287455
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12117939
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117940
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751489
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR5865536
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865965
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813651
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287625
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR12118023
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813720
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813055
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR8773966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813130
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4829597
|
MDR-TB
|
lineage4.3.3
|
it
|
ERR11082203
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167152
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284120
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118002
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2706945
|
MDR-TB
|
lineage5.2
|
cd
|
SRR24256372
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6831989
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287431
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4828970
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287423
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287402
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR13870389
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13284095
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11080997
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13290725
|
MDR-TB
|
lineage2.1
|
None
|
SRR16915717
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR779847
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR7341691
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR18715276
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824356
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR11662442
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169082
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256044
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287343
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287378
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR22461586
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2516375
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813086
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813340
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866005
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1003104
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4828993
|
MDR-TB
|
lineage4.2.2.2
|
it
|
SRR1173372
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4827479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2184222
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13243567
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2516266
|
MDR-TB
|
lineage4.3.3
|
be
|
ERR779895
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813218
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR751569
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1162992
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812886
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1165491
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13870377
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812988
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28394084
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4798573
|
MDR-TB
|
lineage4.3.3
|
in
|
ERR751460
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR23311063
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260656
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6807754
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13285895
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260615
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4276882
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR9030298
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4972487
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813679
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02360626
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR7517772
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4872274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9125281
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR9029914
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813160
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR6865422
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813664
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831275
|
MDR-TB
|
lineage4.2.2.2
|
de
|
SRR22424946
|
MDR-TB
|
lineage3
|
None
|
ERR7911380
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117951
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16915729
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11798588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813390
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4553427
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR847798
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR4024826
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813442
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28045054
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR775383
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR1213928
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR7755733
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2510167
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR10680182
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1048844
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29081651
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698478
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284269
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1013546
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4813152
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4812977
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813605
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13870392
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4812852
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1166928
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14801881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12117944
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR19276596
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284849
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4812830
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813360
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24710045
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1049562
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR3132181
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR040125
|
MDR-TB
|
lineage4.6.1.2
|
ug
|
ERR7910931
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR6866326
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16370486
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3105743
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR14782605
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12117966
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813087
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR3287491
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287698
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10867922
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813302
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21732310
|
MDR-TB
|
lineage3
|
None
|
SRR16370501
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117949
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081576
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662559
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887742
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094389
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813714
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR552474
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173311
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751459
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2516344
|
MDR-TB
|
lineage4.1.3
|
be
|
ERR4811832
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811873
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28393489
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812837
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461618
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287694
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1166826
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18714901
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911368
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR5866293
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1367225
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639789
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12118019
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3732678
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11050143
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813050
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29273851
|
MDR-TB
|
lineage4.7
|
None
|
ERR4812727
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR751429
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR751472
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR15600348
|
MDR-TB
|
lineage4.8
|
None
|
ERR4800679
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813687
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698487
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02414981
|
MDR-TB
|
lineage4.3.3
|
se
|
ERR1035075
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR22424919
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4798790
|
Pre-XDR-TB
|
lineage3.1;lineage4.3.3
|
in
|
SRR22424941
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR5866400
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813697
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6865645
|
MDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
ERR3287421
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13260305
|
Other
|
lineage4.3.3
|
None
|
SRR28393927
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11069030
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553785
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR22461623
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR20969456
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR12118010
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13289499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12118042
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR19276598
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287793
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287418
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813613
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR2516504
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR924210
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287671
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1049561
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR2184413
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR5153309
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA104362063
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812087
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118055
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6865455
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5709918
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4813723
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813180
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
pe
|
SRR14782810
|
HR-TB
|
lineage4.3.3
|
None
|
SRR16915720
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9125437
|
MDR-TB
|
lineage3
|
None
|
ERR12117991
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117984
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813345
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813441
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR7911015
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR21690210
|
MDR-TB
|
lineage4.3.3
|
None
|
DRR454971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017035
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
ERR4813468
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28393780
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7362047
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971137
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081813
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR137284
|
MDR-TB
|
lineage4.3.3
|
ru
|
ERR4178206
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13267448
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13291081
|
Other
|
lineage2.2.1
|
None
|
ERR3287326
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR775311
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR24256197
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812843
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4812850
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR6358856
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4025028
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13180207
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812945
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1002686
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088326
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709860
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR11662347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5818615
|
MDR-TB
|
lineage1.1.2
|
dj
|
ERR4813684
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751469
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR11662294
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393697
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11043928
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR19276599
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR11080848
|
MDR-TB
|
lineage3
|
None
|
ERR4195752
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811824
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR19276610
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813353
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811900
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR8698488
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6358857
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR12117906
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10762404
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13290732
|
MDR-TB
|
lineage2.1
|
None
|
ERR751462
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2184223
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR5535703
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117897
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118003
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461706
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553813
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10869170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9119389
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662711
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743380
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR6865999
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11044164
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4812968
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7910850
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813337
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12118028
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287643
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10808916
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13870387
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4829671
|
MDR-TB
|
lineage4.3.1
|
it
|
ERR4813125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4553778
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR4972476
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6866017
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813689
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7910881
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287403
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR13870425
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4812963
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1768633
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811760
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11081032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488369
|
Pre-XDR-TB
|
lineage1.1.3.2
|
None
|
ERR4024976
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR12117924
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9027227
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR3287452
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287499
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4423721
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813438
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR11349162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117946
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553547
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6484920
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23862026
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1174312
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4813688
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698489
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698502
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8698493
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR924237
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR22461644
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13870405
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10828613
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22461668
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29081630
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812322
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813024
|
MDR-TB
|
lineage4.3.3
|
pe
|
SAMN01925621
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285817
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813464
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
pe
|
ERR4827988
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813352
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813357
|
MDR-TB
|
lineage4.3.3
|
pe
|
SAMN02584584
|
MDR-TB
|
lineage4.3.3
|
md
|
ERR751599
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR6865509
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751399
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR11662368
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751446
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1367226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140569
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR12117953
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662544
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175239
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR29017033
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
ERR2516161
|
MDR-TB
|
lineage4.3.3
|
es
|
ERR751604
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813111
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR4813447
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10828205
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287484
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR19276597
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256305
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6832756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287475
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813427
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11081452
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707109
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR1723454
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR1163172
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR28393912
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18714914
|
MDR-TB
|
lineage4.3.3
|
None
|