| lineage | Count |
|---|---|
| lineage4.1.2 | 381 |
| lineage2.2.1 | 4 |
| lineage4.1.1.1;lineage4.1.2 | 3 |
| lineage4.1.2;lineage4.2.1 | 1 |
| lineage4.1.2;lineage4.4.1.1 | 1 |
| lineage3.1;lineage4.1.2 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.1.2 | 2 |
| lineage4.1.2;lineage4.3.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage4.1 | 1 |
| lineage2.2.1.1;lineage4.1.2 | 1 |
| spoligotype | Count |
|---|---|
| None | 401 |
| ID | Drug resistance | Lineage | Country iso2 | SRR29051360 | HR-TB | lineage4.1.2 | None | SRR18213694 | Other | lineage2.2.1 | None | SRR13583344 | RR-TB | lineage4.1.2 | None | SRR7069506 | Other | lineage4.1.1.1;lineage4.1.2 | None | ERR11081011 | Other | lineage4.1.2 | None | ERR4830498 | Other | lineage4.1.2 | None | SRR29051286 | MDR-TB | lineage4.1.2 | None | ERR13285313 | Other | lineage4.1.2 | None | SRR29051312 | MDR-TB | lineage4.1.2 | None | SRR21689798 | Other | lineage4.1.2 | None | ERR11067406 | Other | lineage4.1.2 | None | ERR1034625 | Other | lineage4.1.1.1;lineage4.1.2 | br | SRR22251094 | Other | lineage4.1.2 | None | SRR29051535 | MDR-TB | lineage4.1.2 | None | SRR29050742 | MDR-TB | lineage4.1.2 | None | ERR9806987 | Other | lineage4.1.2 | None | SRR29440588 | Other | lineage4.1.2 | None | SRR29051565 | MDR-TB | lineage4.1.2 | None | SRR14164690 | Other | lineage4.1.2 | None | SRR14164941 | Other | lineage4.1.2 | None | SRR11349181 | Other | lineage4.1.2 | None | SRR29414397 | Other | lineage4.1.2 | None | SRR1019180 | Other | lineage4.1.2 | None | ERR4195772 | Other | lineage4.1.2 | None | ERR230095 | Other | lineage4.1.2 | None | ERR13285365 | Other | lineage4.1.2 | None | SRR29051516 | Other | lineage4.1.2 | None | SRR29230853 | Other | lineage4.1.2 | None | SRR6832065 | Other | lineage4.1.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR28409633 | Other | lineage4.1.2 | None | ERR108465 | HR-TB | lineage4.1.2;lineage4.2.1 | ru | SRR29051369 | MDR-TB | lineage4.1.2 | None | ERR13285425 | Other | lineage4.1.2 | None | ERR4821597 | Other | lineage4.1.2 | None | ERR11081869 | Other | lineage4.1.2 | None | SRR6785188 | Other | lineage4.1.2 | None | ERR1034620 | HR-TB | lineage4.1.2 | br | SRR2101706 | Other | lineage4.1.2 | None | ERR11049117 | Other | lineage4.1.2;lineage4.4.1.1 | None | SRR13583340 | MDR-TB | lineage4.1.2 | None | SRR21690059 | Other | lineage4.1.2 | None | ERR4817722 | Other | lineage4.1.2 | None | ERR4831195 | Other | lineage4.1.2 | de | ERR9121161 | Other | lineage4.1.2 | None | ERR11044693 | Other | lineage4.1.2 | None | ERR552017 | Other | lineage4.1.2 | None | SRR13583509 | Other | lineage4.1.2 | None | ERR11068504 | Other | lineage4.1.2 | None | ERR752120 | Other | lineage4.1.2 | th | ERR4814039 | Other | lineage4.1.2 | br | ERR751758 | Other | lineage4.1.2 | th | ERR12745269 | Other | lineage4.1.2 | None | ERR8699175 | Other | lineage4.1.2 | None | ERR4830743 | Pre-XDR-TB | lineage4.1.2 | dz | ERR5918036 | Other | lineage4.1.2 | za | ERR5918048 | HR-TB | lineage4.1.2 | za | SRR14782433 | Other | lineage4.1.2 | None | SRR21736385 | Other | lineage4.1.2 | None | ERR8975549 | Other | lineage4.1.2 | None | ERR4815214 | Other | lineage4.1.2 | gb | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818257 | Other | lineage4.1.2 | gb | ERR4820405 | Other | lineage4.1.2 | gb | ERR4820435 | Other | lineage4.1.2 | gb | ERR2515773 | Other | lineage4.1.2 | za | ERR067751 | Other | lineage4.1.2 | ru | ERR067734 | Other | lineage4.1.2 | ru | ERR229959 | Other | lineage4.1.2 | ru | ERR228008 | Other | lineage4.1.2 | ru | ERR234634 | Other | lineage4.1.2 | ru | ERR176805 | Other | lineage4.1.2 | mw | ERR1465726 | Other | lineage4.1.2 | None | SRR16156267 | HR-TB | lineage4.1.2 | None | SRR29051511 | MDR-TB | lineage4.1.2 | None | SRR29051300 | Other | lineage4.1.2 | None | ERR9125162 | Other | lineage4.1.2 | None | SRR6982389 | Other | lineage3.1;lineage4.1.2 | None | ERR2517517 | Other | lineage4.1.2 | nl | ERR6544665 | HR-TB | lineage4.1.2 | None | ERR11775351 | Other | lineage4.1.2 | None | SRR16088240 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR11081074 | Other | lineage4.1.2 | None | SRR12931755 | Other | lineage4.1.2 | None | ERR2515538 | Other | lineage4.1.2 | za | SRR14782080 | Other | lineage4.1.2 | None | ERR2515624 | Other | lineage4.1.2 | za | ERR4872065 | MDR-TB | lineage4.1.2 | None | SRR13583402 | Other | lineage4.1.2 | None | ERR551674 | Other | lineage4.1.2 | None | ERR9786955 | Other | lineage4.1.2 | None | SRR6982054 | Other | lineage4.1.2 | None | SRR6982181 | Other | lineage4.1.2 | None | SRR7069255 | Other | lineage4.1.2 | None | SRR21690251 | Other | lineage4.1.2 | None | SRR22251289 | Other | lineage4.1.2 | None | ERR11049174 | Other | lineage4.1.2 | None | SRR29051024 | HR-TB | lineage4.1.2 | None | ERR9119354 | Other | lineage4.1.2 | None | ERR11067401 | Other | lineage4.1.2 | None | SRR29231333 | Other | lineage4.1.2 | None | ERR11068463 | Other | lineage4.1.2 | None | ERR11081010 | Other | lineage4.1.2 | None | SRR14807619 | Other | lineage4.1.2 | None | ERR841406 | Other | lineage4.1.2 | ch | SRR13583472 | Pre-XDR-TB | lineage4.1.2 | None | ERR3275757 | Other | lineage4.1.2 | nl | SRR6785337 | Other | lineage4.1.2 | None | ERR552311 | Other | lineage4.1.2 | None | ERR3275316 | Other | lineage4.1.2 | nl | SRR29050712 | MDR-TB | lineage4.1.2 | None | ERR1633838 | Other | lineage4.1.2 | za | ERR1633898 | Other | lineage4.1.2 | za | ERR1633827 | Other | lineage4.1.2 | za | ERR403220 | Other | lineage4.1.2 | None | SRR29230822 | Other | lineage4.1.2 | None | SRR29050896 | HR-TB | lineage4.1.2 | None | SRR29051585 | MDR-TB | lineage4.1.2 | None | SRR29052864 | Other | lineage4.1.2 | None | SRR29051011 | MDR-TB | lineage4.1.2 | None | SRR29050704 | MDR-TB | lineage4.1.2 | None | ERR2653066 | HR-TB | lineage4.1.2 | None | SRR29051205 | MDR-TB | lineage4.1.2 | None | SRR6855696 | Other | lineage4.1.2 | None | ERR495128 | Other | lineage4.1.2 | None | SRR28240215 | Other | lineage4.1.2;lineage4.9 | None | SRR14801723 | Other | lineage4.1.2 | None | SRR29231610 | Other | lineage4.1.2 | None | SRR13583321 | HR-TB | lineage4.1.2 | None | ERR551315 | Other | lineage4.1.2 | None | SRR29231338 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | ERR279534 | Other | lineage4.1.2 | None | SRR29050720 | MDR-TB | lineage4.1.2 | None | SRR6480579 | Other | lineage4.1.2 | None | SRR13583432 | MDR-TB | lineage4.1.2 | None | ERR1465834 | Other | lineage4.1.2 | None | SRR29051278 | Other | lineage4.1.2 | None | SRR29051514 | Other | lineage4.1.2 | None | SRR29051315 | MDR-TB | lineage4.1.2 | None | ERR4818972 | Other | lineage4.1.2 | None | SRR29050694 | Pre-XDR-TB | lineage4.1.2 | None | SRR21689813 | Other | lineage4.1.2 | None | ERR400367 | Other | lineage4.1.2 | None | ERR551287 | Other | lineage4.1.2 | None | ERR551673 | Other | lineage4.1.2 | None | ERR13276076 | Other | lineage4.1.2 | None | SRR13583397 | MDR-TB | lineage4.1.2 | None | SRR10869024 | Other | lineage4.1.2 | None | SRR29050868 | Other | lineage4.1.2 | None | SRR26112652 | Other | lineage4.1.2 | None | ERR12311976 | Other | lineage4.1.2 | None | ERR11466181 | Other | lineage4.1.2 | None | ERR13260796 | Other | lineage4.1.2 | None | SRR29051010 | Pre-XDR-TB | lineage4.1.2 | None | SRR21690967 | Other | lineage4.1.2 | None | ERR13292524 | Other | lineage4.1.2 | None | SRR24673542 | Other | lineage4.1.2 | None | SRR13591443 | Other | lineage4.1.2 | None | SRR29050883 | Pre-XDR-TB | lineage4.1.2 | None | ERR11068447 | Other | lineage4.1.2 | None | ERR11067819 | Other | lineage4.1.2 | None | SRR6831999 | Other | lineage4.1.2 | None | SRR13583338 | MDR-TB | lineage4.1.2 | None | ERR4819897 | Other | lineage4.1.2 | gb | SRR26399434 | Other | lineage4.1.2 | None | SRR29051055 | MDR-TB | lineage4.1.2 | None | SRR29050679 | MDR-TB | lineage4.1.2 | None | SRR29051324 | RR-TB | lineage4.1.2 | None | ERR2653236 | Pre-XDR-TB | lineage4.1.2 | None | ERR279524 | Other | lineage4.1.2 | None | SRR6832672 | Other | lineage4.1.2 | None | SRR16156265 | HR-TB | lineage4.1.2 | None | SRR28044465 | Other | lineage4.1.2 | None | ERR4813749 | HR-TB | lineage4.1.2 | br | ERR4813743 | Other | lineage4.1.2 | br | ERR4830257 | Other | lineage4.1.2 | vn | SRR2101499 | Other | lineage4.1.2 | None | SRR2101644 | Other | lineage4.1.2 | None | ERR067675 | Other | lineage4.1.2 | ru | ERR067703 | Other | lineage4.1.2 | ru | ERR108444 | Other | lineage4.1.2 | ru | ERR108445 | Other | lineage4.1.2 | ru | ERR133822 | Other | lineage4.1.2 | ru | ERR181988 | Other | lineage4.1.2 | mw | ERR234587 | Other | lineage4.1.2 | ru | SAMEA3715607 | Other | lineage4.1.2 | None | ERR550697 | Other | lineage4.1.2 | cg | ERR551929 | Other | lineage4.1.2 | cg | ERR4817406 | Other | lineage4.1.2 | gb | ERR2514710 | Other | lineage4.1.2 | gb | SRR10869026 | Other | lineage4.1.2 | None | SRR14718673 | Other | lineage4.1.2 | None | SRR13583360 | MDR-TB | lineage4.1.2 | None | ERR1034968 | Other | lineage4.1.2 | za | SRR21689824 | Other | lineage4.1.2 | None | SRR29093153 | Other | lineage4.1.2 | None | SRR29051228 | Other | lineage4.1.2 | None | SRR29052968 | Other | lineage4.1.2 | None | SRR29126953 | Other | lineage4.1.2 | None | ERR9892006 | Other | lineage4.1.2 | None | ERR234636 | Other | lineage4.1.2 | ru | SRR29050673 | Other | lineage4.1.2;lineage4.3.3 | None | SRR21689533 | Other | lineage4.1.2 | None | SRR13583353 | MDR-TB | lineage4.1.2 | None | ERR6544666 | HR-TB | lineage4.1.2 | None | SRR2101625 | Other | lineage3.1;lineage4.1.2 | None | SRR19304103 | HR-TB | lineage4.1.2 | None | ERR294273 | Other | lineage4.1.2 | None | ERR1034631 | HR-TB | lineage4.1.2 | br | ERR11067668 | Other | lineage4.1.2 | None | SRR14807484 | Other | lineage4.1.2 | None | SRR3725681 | Other | lineage4.1.2 | None | SRR14801669 | Other | lineage4.1.2 | None | ERR11081448 | Other | lineage4.1.2 | None | ERR10748295 | MDR-TB | lineage4.1.2 | None | SRR14782161 | Other | lineage4.1.2 | None | SRR29050897 | MDR-TB | lineage4.1.2 | None | ERR4819852 | Other | lineage4.1.2 | None | ERR6544664 | Other | lineage4.1.1.1;lineage4.1.2 | None | SRR13583446 | HR-TB | lineage4.1.2 | None | ERR13289042 | Other | lineage4.1.2 | None | ERR351928 | Other | lineage2.2.1 | None | ERR4809082 | Other | lineage4.1.2 | za | ERR9121404 | Other | lineage4.1.2 | None | ERR13289339 | RR-TB | lineage4.1.2 | None | ERR9993111 | Pre-XDR-TB | lineage4.1.2 | None | ERR11067948 | Other | lineage4.1.2 | None | SRR13583369 | MDR-TB | lineage4.1.2 | None | ERR11068547 | HR-TB | lineage4.1.2 | None | ERR279597 | Other | lineage4.1.2 | None | ERR4809324 | Other | lineage4.1.2 | za | SRR6855778 | Other | lineage4.1.2 | None | ERR9119471 | MDR-TB | lineage4.1.2 | None | SRR9224981 | MDR-TB | lineage4.1.2 | None | ERR9901041 | Other | lineage4.1.2 | None | SRR29081635 | Pre-XDR-TB | lineage4.1.2 | None | ERR10112416 | HR-TB | lineage2.2.1.1 | None | ERR2446180 | Other | lineage4.1.2 | nl | ERR9121338 | Other | lineage4.1.2 | None | ERR11044540 | Other | lineage4.1.2 | None | SRR29051035 | Other | lineage4.1.2 | None | SRR29050678 | MDR-TB | lineage4.1.2 | None | ERR13292523 | Other | lineage4.1.2 | None | SRR9224986 | MDR-TB | lineage4.1.2 | None | DRR474060 | Other | lineage4.1.2 | None | ERR495065 | Other | lineage4.1.2 | None | ERR1367619 | Other | lineage4.1.2 | None | SRR29050710 | MDR-TB | lineage4.1.2 | None | ERR11068143 | Other | lineage4.1.2 | None | ERR10465970 | Other | lineage4.1.2 | None | ERR11080833 | Other | lineage4.1.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR29050875 | HR-TB | lineage4.1.2 | None | ERR2503379 | Other | lineage4.1.2 | None | ERR386860 | Other | lineage2.2.1 | None | SRR24255928 | Other | lineage4.1.2 | None | SRR3724764 | Other | lineage4.1.2 | None | SRR15399223 | Other | lineage4.1.2 | None | SRR14165060 | Other | lineage4.1.2 | None | SRR10851704 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | SRR29230801 | Other | lineage4.1.2 | None | SRR29126736 | Other | lineage4.1.2 | None | ERR11049369 | Other | lineage4.1.2 | None | ERR13292034 | Other | lineage4.1.2 | None | SRR10851692 | Other | lineage4.1.2 | None | SRR22536480 | MDR-TB | lineage4.1.2 | None | SRR29081565 | Pre-XDR-TB | lineage4.1.2 | None | SRR29231362 | Other | lineage4.1.2 | None | SRR10851672 | Other | lineage4.1.2 | None | ERR552016 | Other | lineage4.1.2 | None | SRR29231389 | Other | lineage4.1.2 | None | SRR6982468 | Other | lineage4.1.2 | None | SRR10315568 | Other | lineage4.1.2 | None | SRR21676309 | Other | lineage4.1.2 | None | SRR18337414 | Other | lineage4.1.2 | None | ERR6544667 | MDR-TB | lineage4.1.2 | None | SRR13583311 | Other | lineage4.1.2 | None | ERR552015 | Other | lineage4.1.2 | None | ERR552312 | Other | lineage4.1.2 | None | ERR11081201 | Other | lineage4.1.2 | None | SRR26112118 | Other | lineage4.1.2 | None | SRR13583314 | HR-TB | lineage4.1.2 | None | ERR13260737 | Other | lineage4.1.2 | None | SRR29051338 | Pre-XDR-TB | lineage4.1.2 | None | ERR1465736 | Other | lineage4.1.2 | None | ERR181977 | Other | lineage1.1.2;lineage4.1 | mw | ERR190397 | Other | lineage4.1.2 | mw | SRR29051489 | Other | lineage4.1.2 | None | ERR13273265 | Other | lineage4.1.2 | None | ERR2514044 | Other | lineage4.1.2 | None | ERR403239 | Other | lineage4.1.2 | None | ERR12057468 | Other | lineage4.1.2 | None | SRR21675861 | Other | lineage4.1.2 | None | SRR29051302 | MDR-TB | lineage4.1.2 | None | ERR1034963 | Other | lineage4.1.2 | za | ERR11083150 | Other | lineage4.1.2 | None | SRR29051258 | Pre-XDR-TB | lineage4.1.2 | None | SRR13583342 | MDR-TB | lineage4.1.2 | None | SRR13583434 | MDR-TB | lineage4.1.2 | None | SRR13583455 | Other | lineage4.1.2 | None | SRR22251441 | Other | lineage4.1.2 | None | SRR14801733 | Other | lineage4.1.2 | None | ERR11067597 | Other | lineage4.1.2 | None | SRR13583302 | MDR-TB | lineage4.1.2 | None | ERR751883 | Other | lineage4.1.2 | th | ERR752043 | Other | lineage4.1.2 | th | ERR7911457 | Other | lineage4.1.2 | za | SRR25395687 | Other | lineage4.1.2 | None | ERR4831305 | Other | lineage4.1.2 | de | ERR4809301 | RR-TB | lineage4.1.2 | za | ERR4814038 | Other | lineage4.1.2 | br | ERR4829486 | Pre-XDR-TB | lineage4.1.2 | it | ERR4820827 | Other | lineage4.1.2 | None | ERR8975368 | Other | lineage4.1.2 | None | SRR22536477 | MDR-TB | lineage4.1.2 | None | ERR495055 | Other | lineage4.1.2 | None | SRR10315569 | Other | lineage4.1.2 | None | SRR13583519 | MDR-TB | lineage4.1.2 | None | ERR11050079 | Other | lineage4.1.2 | None | ERR551186 | Other | lineage4.1.2 | de | ERR551244 | Other | lineage4.1.2 | de | ERR552742 | Other | lineage4.1.2 | de | SRR2100719 | Other | lineage4.1.2 | None | SRR2101061 | Other | lineage4.1.2 | None | SRR2101265 | Other | lineage2.2.1 | None | ERR228016 | Other | lineage4.1.2 | ru | ERR133801 | Other | lineage4.1.2 | ru | ERR4819318 | Other | lineage4.1.2 | gb | ERR2513489 | Other | lineage4.1.2 | gb | ERR2515355 | Other | lineage4.1.2 | za | ERR2515861 | Other | lineage4.1.2 | za | ERR133832 | Other | lineage4.1.2 | ru | ERR234558 | Other | lineage4.1.2 | ru | ERR227998 | Other | lineage4.1.2 | ru | ERR228053 | Other | lineage4.1.2 | ru | ERR229987 | Other | lineage4.1.2 | ru | ERR551675 | Other | lineage4.1.2 | de | ERR551288 | Other | lineage4.1.2 | de | ERR551316 | Other | lineage4.1.2 | de | ERR552314 | Other | lineage4.1.2 | de | ERR2199816 | Other | lineage4.1.2 | de | ERR2200034 | Other | lineage4.1.2 | sz | ERR2041771 | MDR-TB | lineage4.1.2 | rs | SRR13583431 | MDR-TB | lineage4.1.2 | None | SRR19325676 | Other | lineage4.1.2 | None | ERR11068436 | Other | lineage4.1.2 | None | ERR11043204 | Other | lineage4.1.2 | None | SRR22251312 | Other | lineage4.1.2 | None | SRR21690318 | Other | lineage4.1.2 | None | SRR29050680 | HR-TB | lineage4.1.2 | None | ERR190385 | Other | lineage4.1.2 | mw | SRR5065263 | Other | lineage4.1.2 | vn | DRR184639 | Other | lineage4.1.2 | vn | SRR10851606 | Other | lineage4.1.2 | None | SRR10851691 | Other | lineage4.1.2 | None | SRR5065248 | Other | lineage4.1.2 | vn | SRR11461654 | Other | lineage4.1.2 | None | DRR184993 | Other | lineage4.1.2 | vn | ERR2517303 | Other | lineage4.1.2 | nl | SRR9224911 | MDR-TB | lineage4.1.2 | None | SRR18337415 | Other | lineage4.1.2 | None | ERR11067582 | Other | lineage4.1.2 | None | SRR9224962 | Other | lineage4.1.2 | None | ERR11067385 | Other | lineage4.1.2 | None | SRR6896189 | Other | lineage4.1.2 | None | SRR6896408 | Other | lineage4.1.2 | None | SRR18714824 | Other | lineage4.1.2 | None | ERR9030301 | Other | lineage4.1.2 | None | ERR551314 | Other | lineage4.1.2 | None | ERR13288731 | RR-TB | lineage4.1.2 | None | SRR7645806 | Other | lineage4.1.2 | None | ERR2515976 | Other | lineage4.1.2 | za | SRR6855743 | Other | lineage4.1.2 | None | ERR11068589 | HR-TB | lineage4.1.2 | None | SRR16156276 | HR-TB | lineage4.1.2 | None | ERR1034627 | MDR-TB | lineage4.1.2 | br | SRR29051292 | MDR-TB | lineage4.1.2 | None | ERR11081073 | Other | lineage4.1.2 | None | ERR2660429 | Other | lineage4.1.2 | None | SRR16058082 | Other | lineage4.1.2 | None | SRR24222964 | Other | lineage4.1.2 | None | SRR10315570 | Other | lineage4.1.2 | None | ERR11775033 | Other | lineage4.1.2 | None | SRR29051344 | RR-TB | lineage4.1.2 | None | ERR3275952 | Other | lineage4.1.2 | nl | ERR4820645 | Other | lineage4.1.2 | None | ERR11068898 | Other | lineage4.1.2 | None | SRR29093649 | Other | lineage4.1.2 | None | SRR29051521 | HR-TB | lineage4.1.2 | None | SRR29081634 | Pre-XDR-TB | lineage4.1.2 | None | SRR29051239 | HR-TB | lineage4.1.2 | None | ERR3275750 | Other | lineage4.1.2 | nl | SRR9224928 | RR-TB | lineage4.1.2 | None | SRR1011505 | Other | lineage4.1.2 | None | SRR29050707 | RR-TB | lineage4.1.2 | None | ERR2513743 | Other | lineage4.1.2 | None | ERR4195672 | Other | lineage4.1.2 | None | ERR4195807 | Other | lineage4.1.2 | None | SRR10851620 | Other | lineage4.1.2 | None | SRR6856052 | Other | lineage4.1.2 | None | ERR10748565 | MDR-TB | lineage2.2.1.1;lineage4.1.2 | None |
|---|