TB-Profiler result

Run: ERR037235
Summary

Run ID: ERR037235

Sample name:

Date: 31-03-2023 08:31:47

Number of reads: 1204

Percentage reads mapped: 0.44

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471896 n.51T>A non_coding_transcript_exon_variant 0.83
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 1.0
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.58
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.85
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.6
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.31
rrs 1472222 n.377G>A non_coding_transcript_exon_variant 0.5
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.78
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.78
rrs 1472229 n.384C>T non_coding_transcript_exon_variant 0.5
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.3
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.5
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>C non_coding_transcript_exon_variant 0.8
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.29
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.76
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.44
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.33
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.44
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 1.0
rrs 1472599 n.754G>A non_coding_transcript_exon_variant 0.86
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 1.0
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.71
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.89
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.71
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 1.0
rrs 1472733 n.888G>T non_coding_transcript_exon_variant 0.5
rrs 1472734 n.889C>A non_coding_transcript_exon_variant 0.5
rrs 1472741 n.896G>T non_coding_transcript_exon_variant 0.4
rrs 1472742 n.897C>A non_coding_transcript_exon_variant 0.5
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.78
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 1.0
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.95
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1472806 n.961A>T non_coding_transcript_exon_variant 0.62
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472827 n.982G>A non_coding_transcript_exon_variant 1.0
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.81
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.79
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.29
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.94
rrs 1473047 n.1202C>T non_coding_transcript_exon_variant 0.71
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.77
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 1.0
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.8
rrs 1473088 n.1243A>C non_coding_transcript_exon_variant 0.67
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.8
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 0.29
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.57
rrs 1473198 n.1354delC non_coding_transcript_exon_variant 1.0
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.78
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.44
rrs 1473215 n.1370A>G non_coding_transcript_exon_variant 0.4
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.67
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.91
rrs 1473380 n.1535T>G splice_region_variant&non_coding_transcript_exon_variant 0.67
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474228 n.571T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 1.0
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.5
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.67
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 1.0
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 1.0
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 1.0
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.95
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.47
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.33
rrl 1475871 n.2214T>C non_coding_transcript_exon_variant 0.5
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 1.0
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 1.0
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 1.0
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.83
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.91
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.97
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.93
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.26
rrl 1476411 n.2754G>T non_coding_transcript_exon_variant 0.55
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.96
rrl 1476463 n.2806C>A non_coding_transcript_exon_variant 0.8
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.95
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.82
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.67
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 1.0
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 1.0
rrl 1476573 n.2916A>G non_coding_transcript_exon_variant 1.0
rrl 1476577 n.2920T>A non_coding_transcript_exon_variant 1.0