Run ID: ERR2514499
Sample name:
Date: 17-08-2022 19:12:35
Number of reads: 2308386
Percentage reads mapped: 99.36
Strain: lineage4;lineage1.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.06 |
lineage1 | Indo-Oceanic | EAI | RD239 | 0.87 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 0.84 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 | 0.84 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Ala | missense_variant | 0.86 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 0.9 |
gyrB | 6124 | c.885C>T | synonymous_variant | 0.9 |
gyrB | 6573 | p.Cys445Ser | missense_variant | 0.85 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 0.82 |
gyrA | 9047 | c.1746C>T | synonymous_variant | 0.82 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.81 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9443 | c.2142G>A | synonymous_variant | 0.88 |
fgd1 | 490754 | c.-29C>G | upstream_gene_variant | 0.13 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.93 |
mshA | 576000 | p.Asp218Ala | missense_variant | 0.85 |
rpoB | 760490 | c.684C>T | synonymous_variant | 0.83 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 0.13 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.94 |
rpoC | 763884 | p.Ala172Val | missense_variant | 0.9 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.9 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 0.89 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781874 | c.315G>A | synonymous_variant | 0.85 |
fbiC | 1305243 | c.2313T>G | synonymous_variant | 0.86 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 0.71 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.96 |
kasA | 2518132 | c.18C>T | synonymous_variant | 0.87 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 0.81 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.84 |
embC | 4241042 | p.Asn394Asp | missense_variant | 0.92 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 0.9 |
embA | 4245969 | p.Pro913Ser | missense_variant | 0.87 |
embB | 4246958 | p.Glu149Lys | missense_variant | 0.85 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.75 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.85 |
ubiA | 4269606 | c.228T>C | synonymous_variant | 0.87 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.95 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.76 |