TB-Profiler result

Run: ERR4024812
Summary

Run ID: ERR4024812

Sample name:

Date: 01-04-2023 04:09:43

Number of reads: 1680973

Percentage reads mapped: 80.37

Strain: lineage4.1.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.96
lineage4.1.2 Euro-American T;H None 0.97
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 0.34
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9470 c.2169G>A synonymous_variant 0.38
fgd1 491591 p.Lys270Met missense_variant 0.98
mshA 575679 p.Asn111Ser missense_variant 0.36
rpoB 760106 c.300G>A synonymous_variant 0.33
rpoB 760115 c.309C>T synonymous_variant 0.97
rpoC 764263 c.894G>A synonymous_variant 0.64
rpoC 765150 p.Gly594Glu missense_variant 0.97
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.12
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.11
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.11
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.11
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.11
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.11
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.11
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.11
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.11
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.11
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.12
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.11
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.2
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.18
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.18
rrs 1472659 n.814G>A non_coding_transcript_exon_variant 0.19
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.2
rrs 1472669 n.824_825insTAG non_coding_transcript_exon_variant 0.21
rrs 1472677 n.832C>G non_coding_transcript_exon_variant 0.21
rrs 1472678 n.833T>A non_coding_transcript_exon_variant 0.21
rrs 1472679 n.834_835insAC non_coding_transcript_exon_variant 0.21
rrs 1472684 n.841_846delGATCCG non_coding_transcript_exon_variant 0.21
rrs 1472697 n.852T>A non_coding_transcript_exon_variant 0.21
rrs 1472700 n.855C>T non_coding_transcript_exon_variant 0.21
rrs 1472705 n.860G>A non_coding_transcript_exon_variant 0.21
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.21
rrs 1472715 n.870C>T non_coding_transcript_exon_variant 0.21
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.21
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.25
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.23
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.23
rrs 1472953 n.1109_1112delTCTC non_coding_transcript_exon_variant 0.18
rrs 1472959 n.1114_1115insTTTA non_coding_transcript_exon_variant 0.17
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.15
rrs 1472975 n.1130T>G non_coding_transcript_exon_variant 0.15
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.16
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.16
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.15
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.15
rrs 1472991 n.1146G>A non_coding_transcript_exon_variant 0.15
rrs 1472992 n.1147A>T non_coding_transcript_exon_variant 0.16
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.16
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.16
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.16
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.16
rrs 1473020 n.1175T>C non_coding_transcript_exon_variant 0.16
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.18
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.13
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.13
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.12
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.32
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.35
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.32
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.3
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.33
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.32
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.39
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.32
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.33
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.32
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.36
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.39
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.35
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.41
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.41
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.43
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.45
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.4
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.37
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.35
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.27
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.25
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.25
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.38
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.32
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.32
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.31
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.3
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.31
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.31
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.32
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.32
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.33
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.31
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.3
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.3
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.29
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.28
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.27
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.26
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.27
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.24
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 0.93
ald 3086788 c.-32T>C upstream_gene_variant 0.97
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.98
fbiB 3641454 c.-81G>A upstream_gene_variant 0.38
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 0.92
embB 4248705 p.Pro731Leu missense_variant 0.66
whiB6 4338595 c.-75delG upstream_gene_variant 1.0