Run ID: ERR4815490
Sample name:
Date: 01-04-2023 13:53:48
Number of reads: 4059228
Percentage reads mapped: 97.22
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.34 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475694 | n.2038_2039insACG | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475697 | n.2040C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475707 | n.2050T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |