Run ID: SRR10828835
Sample name:
Date: 02-04-2023 19:29:08
Number of reads: 4378144
Percentage reads mapped: 99.53
Strain: lineage8
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage8 | Lineage 8 | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761109 | p.Asp435Tyr | missense_variant | 0.91 | rifampicin |
inhA | 1674481 | p.Ser94Ala | missense_variant | 0.98 | isoniazid, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 765772 | c.2403C>T | synonymous_variant | 1.0 |
mmpL5 | 775611 | p.Ser957* | stop_gained | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 779536 | c.-631G>A | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406466 | p.Ser292Leu | missense_variant | 1.0 |
embR | 1417464 | c.-117C>T | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472770 | n.925C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917786 | c.-154G>A | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155155 | c.957C>T | synonymous_variant | 1.0 |
katG | 2155172 | p.Thr314Ala | missense_variant | 1.0 |
katG | 2155430 | p.Ile228Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168701 | p.Val638Ile | missense_variant | 1.0 |
PPE35 | 2168711 | c.1902A>G | synonymous_variant | 1.0 |
PPE35 | 2168924 | c.1689G>T | synonymous_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2714418 | c.915C>T | synonymous_variant | 1.0 |
pepQ | 2859482 | p.Ala313Thr | missense_variant | 1.0 |
thyA | 3074400 | c.72C>G | synonymous_variant | 1.0 |
thyA | 3074591 | c.-120T>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449865 | c.1362G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
Rv3236c | 3612540 | p.Leu193Phe | missense_variant | 1.0 |
alr | 3840800 | c.621C>A | synonymous_variant | 1.0 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246799 | p.Gly96Arg | missense_variant | 1.0 |
embB | 4247252 | p.Ser247Ala | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248022 | p.Leu503Phe | missense_variant | 1.0 |
embB | 4248206 | p.Ser565Gly | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326264 | p.Arg404Cys | missense_variant | 1.0 |
ethA | 4326682 | p.Phe264Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407916 | c.286delC | frameshift_variant | 1.0 |