Run ID: SRR13861474
Sample name:
Date: 03-04-2023 09:32:46
Number of reads: 1140377
Percentage reads mapped: 22.83
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7877 | p.His192Gln | missense_variant | 1.0 |
mshA | 576146 | p.Val267Leu | missense_variant | 1.0 |
rpoB | 759869 | c.63C>T | synonymous_variant | 1.0 |
rpoC | 763782 | p.Ser138* | stop_gained | 1.0 |
rpoC | 764401 | c.1032C>T | synonymous_variant | 0.17 |
rpoC | 764404 | c.1035C>T | synonymous_variant | 0.18 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.18 |
rpoC | 764419 | c.1050C>T | synonymous_variant | 0.17 |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.16 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.16 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.16 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.16 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.17 |
rpoC | 764451 | p.Gly361Ala | missense_variant | 0.17 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.18 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 0.18 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.18 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 0.19 |
rpoC | 764479 | c.1110G>A | synonymous_variant | 0.19 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.18 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.18 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.17 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.16 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.16 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.16 |
rpoC | 764568 | p.Lys400Thr | missense_variant | 1.0 |
mmpL5 | 777073 | p.Lys470Glu | missense_variant | 1.0 |
mmpL5 | 777311 | c.1170C>T | synonymous_variant | 1.0 |
mmpL5 | 778981 | c.-501C>A | upstream_gene_variant | 1.0 |
rplC | 801436 | p.Ser210Arg | missense_variant | 1.0 |
fbiC | 1303686 | c.756C>G | synonymous_variant | 1.0 |
rrs | 1472605 | n.760G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674376 | p.Pro59Ser | missense_variant | 1.0 |
tlyA | 1917844 | c.-96C>A | upstream_gene_variant | 1.0 |
tlyA | 1918260 | p.His107Gln | missense_variant | 1.0 |
katG | 2154461 | p.Ala551Pro | missense_variant | 1.0 |
Rv1979c | 2222535 | c.630C>G | synonymous_variant | 1.0 |
kasA | 2518608 | p.Met165Thr | missense_variant | 1.0 |
eis | 2714211 | c.1122G>A | synonymous_variant | 1.0 |
ahpC | 2726250 | p.Gly20Arg | missense_variant | 1.0 |
fprA | 3473932 | c.-75G>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612518 | p.Tyr200Ser | missense_variant | 1.0 |
fbiB | 3641684 | p.Ser50Arg | missense_variant | 1.0 |
embC | 4240263 | p.Val134Ala | missense_variant | 1.0 |
embC | 4240920 | p.Leu353Pro | missense_variant | 1.0 |
embC | 4241504 | p.Val548Met | missense_variant | 1.0 |
embB | 4248000 | p.Asp496Val | missense_variant | 1.0 |
aftB | 4268715 | p.Leu41Pro | missense_variant | 1.0 |
ethR | 4327704 | p.Lys52Asn | missense_variant | 1.0 |