SRR7069052
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29017085
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662323
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4872250
|
MDR-TB
|
lineage5.1.1
|
None
|
ERR3470691
|
MDR-TB
|
lineage3
|
None
|
ERR13261103
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800621
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13262092
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR10679994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827537
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797387
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR21675614
|
HR-TB
|
lineage4.9
|
None
|
ERR4553639
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553769
|
MDR-TB
|
|
None
|
ERR4798921
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13262112
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798427
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4821532
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
ERR4798995
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR22251448
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR4553800
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017059
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR25827599
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29017343
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7068914
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR11662632
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800232
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR29016886
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29231655
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR3082137
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4817015
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4553949
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR13284216
|
MDR-TB
|
lineage4.8
|
None
|
ERR4798783
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR28393640
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28409370
|
HR-TB
|
lineage4.6.1.2
|
None
|
SRR25827644
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR047880
|
MDR-TB
|
lineage1.1.1
|
ru
|
SRR29017588
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13243368
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2145493
|
MDR-TB
|
lineage3
|
None
|
ERR2707218
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR13260126
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4800051
|
MDR-TB
|
lineage2.2.2
|
in
|
ERR11043189
|
MDR-TB
|
lineage3
|
None
|
ERR4553815
|
MDR-TB
|
lineage4
|
None
|
ERR11488378
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR13284870
|
MDR-TB
|
lineage3
|
None
|
ERR4796566
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR1367657
|
HR-TB
|
lineage4.6.1.2
|
None
|
ERR4553890
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393824
|
MDR-TB
|
lineage4.8
|
None
|
ERR4553585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798860
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799571
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SAMN02414953
|
MDR-TB
|
lineage4.7
|
se
|
ERR181826
|
HR-TB
|
lineage4.9
|
mw
|
SRR22250055
|
HR-TB
|
lineage2.1
|
None
|
ERR4423784
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11082881
|
MDR-TB
|
lineage4.5
|
None
|
ERR4800246
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2707190
|
MDR-TB
|
lineage4.3.4.2.1
|
cd
|
ERR3275263
|
HR-TB
|
lineage4.9
|
nl
|
SRR29231689
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25827872
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796903
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798481
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798574
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR275215
|
MDR-TB
|
lineage2.2.1
|
pt
|
ERR11049950
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2706913
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4816879
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
ERR4818892
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4818328
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553895
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517116
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR1036277
|
MDR-TB
|
lineage2.2.1
|
pt
|
SRR1140739
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR1199108
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR6797368
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796265
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR1213945
|
HR-TB
|
lineage4.1.1.1
|
bd
|
ERR4797378
|
XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827389
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR4553700
|
MDR-TB
|
|
None
|
SRR29289279
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR4553467
|
MDR-TB
|
|
None
|
SRR28044928
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7517732
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR4553856
|
MDR-TB
|
lineage4
|
None
|
ERR13266904
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4799447
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800515
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4815768
|
HR-TB
|
lineage3.1.2.1
|
gb
|
SRR29017583
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR9030384
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9030519
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR4423162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081180
|
MDR-TB
|
lineage3
|
None
|
SRR15506901
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SAMN02381040
|
Pre-XDR-TB
|
lineage4
|
ug
|
SRR1166868
|
MDR-TB
|
lineage4.7
|
None
|
SRR5074054
|
HR-TB
|
lineage2.1
|
vn
|
SRR29017665
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553643
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29017620
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4553838
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553849
|
MDR-TB
|
|
None
|
ERR4553917
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4797311
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
in
|
ERR4798514
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13266575
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266563
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13267060
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR405195
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4553768
|
MDR-TB
|
|
None
|
ERR4553989
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29016874
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR29017410
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR1654703
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR13260054
|
MDR-TB
|
lineage3
|
None
|
ERR13262003
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13262150
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266114
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266809
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21732379
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4829097
|
MDR-TB
|
lineage4.2.2.1
|
dj
|
SRR29017163
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR12115317
|
MDR-TB
|
lineage5.1.2
|
None
|
ERR4831024
|
Pre-XDR-TB
|
lineage2.2.1.1
|
np
|
ERR4553972
|
MDR-TB
|
lineage4
|
None
|
ERR4831175
|
HR-TB
|
lineage4.9
|
de
|
ERR4796573
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR038746
|
MDR-TB
|
lineage2.2.1
|
ug
|
ERR4797843
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797928
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799196
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799465
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800440
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4796572
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR2707016
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707129
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR4831730
|
HR-TB
|
lineage2.1
|
vn
|
ERR987788
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR551126
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797695
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR117618
|
Pre-XDR-TB
|
lineage1.1.1
|
None
|
SRR4423155
|
MDR-TB
|
lineage4
|
None
|
SRR6797630
|
Other
|
lineage4.1.1.1
|
None
|
ERR4553625
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553981
|
MDR-TB
|
|
None
|
ERR4796502
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29017066
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751867
|
MDR-TB
|
lineage1.1.1
|
th
|
SRR29017223
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29231545
|
MDR-TB
|
lineage4.9
|
None
|
SRR29231846
|
MDR-TB
|
lineage4.9
|
None
|
ERR987750
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR11049526
|
HR-TB
|
lineage3.1.2.1
|
None
|
ERR13262151
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796586
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2199997
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2706948
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707018
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
SRR7069851
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR552463
|
MDR-TB
|
lineage4.8.1
|
sz
|
SRR27107300
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4798248
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798890
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2446300
|
HR-TB
|
lineage4.9
|
nl
|
SRR25827693
|
MDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR29017220
|
MDR-TB
|
lineage3.1
|
None
|
SRR29017388
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261382
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11080865
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR4796816
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13284267
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4800514
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR1049574
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR5818655
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
ERR4798107
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR6359002
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199128
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR24112528
|
RR-TB
|
lineage2.2.2
|
None
|
ERR4872081
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1162802
|
MDR-TB
|
lineage4.7
|
None
|
ERR2707200
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR4798508
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799145
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR6797389
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1023224
|
MDR-TB
|
lineage5.1.2
|
None
|
ERR4800004
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR5341466
|
MDR-TB
|
lineage3
|
in
|
ERR4553567
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553929
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680117
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513221
|
Pre-XDR-TB
|
lineage4
|
gb
|
SRR28351358
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR1213950
|
MDR-TB
|
lineage4.1.1.1
|
bd
|
ERR10680047
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR10680067
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29017204
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR5341232
|
HR-TB
|
lineage3.1.2
|
in
|
SRR17658015
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29231797
|
MDR-TB
|
lineage4.9
|
None
|
ERR4553484
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR1367662
|
HR-TB
|
lineage4.2.2.2
|
None
|
ERR4799036
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3.1.2.1;lineage4
|
in
|
SRR22424807
|
HR-TB
|
lineage3
|
None
|
ERR13261488
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29017419
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017617
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2514106
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR6339642
|
MDR-TB
|
lineage3
|
au
|
ERR294220
|
MDR-TB
|
lineage3
|
None
|
SRR25827498
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage4.8
|
None
|
SRR6650240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13262017
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4799177
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800395
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29017572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800569
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR1199112
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR21887643
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4799127
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798251
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR12882492
|
HR-TB
|
lineage1.1.1
|
None
|
ERR4798441
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827711
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR4553665
|
MDR-TB
|
lineage4
|
None
|
ERR4797370
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR6797272
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4553712
|
MDR-TB
|
|
None
|
ERR4553932
|
Pre-XDR-TB
|
|
None
|
SRR3082077
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4553855
|
MDR-TB
|
|
None
|
ERR4553879
|
MDR-TB
|
|
None
|
ERR4553485
|
MDR-TB
|
|
None
|
SRR28351476
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553403
|
MDR-TB
|
|
None
|
SRR28351274
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553894
|
XDR-TB
|
|
None
|
SRR28393981
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28351212
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553798
|
MDR-TB
|
|
None
|
SRR28351293
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2516745
|
MDR-TB
|
lineage3;lineage4.1
|
gb
|
ERR4829940
|
Pre-XDR-TB
|
lineage3;lineage4
|
pk
|
ERR2707086
|
MDR-TB
|
lineage4.9
|
cd
|
ERR2706950
|
MDR-TB
|
lineage5.2
|
cd
|
ERR7737718
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11043505
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
ERR11488461
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR10680121
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2514395
|
MDR-TB
|
lineage4
|
gb
|
ERR2707047
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4798883
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799008
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR18714905
|
Sensitive
|
lineage4.8
|
None
|
SRR6797530
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553916
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801352
|
Sensitive
|
lineage4.8
|
None
|
SRR15465768
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR4797753
|
XDR-TB
|
lineage3
|
in
|
ERR4799173
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827367
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6797801
|
MDR-TB
|
lineage4
|
None
|
ERR10225495
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6797627
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR1063888
|
HR-TB
|
lineage1.1.2
|
None
|
ERR11488518
|
RR-TB
|
lineage4.8.1
|
None
|
SRR25827580
|
MDR-TB
|
lineage3
|
None
|
ERR3132270
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR3639812
|
MDR-TB
|
lineage4.8
|
None
|
SRR25827512
|
MDR-TB
|
lineage3
|
None
|
ERR751818
|
HR-TB
|
lineage1.2.1.2
|
th
|
ERR2124087
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2512730
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR29017586
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR29016859
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2707008
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707183
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR11488835
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR29017392
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1679586
|
MDR-TB
|
lineage4.1.3
|
ng
|
ERR13261505
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266622
|
HR-TB
|
lineage2.2.1.1;lineage4.6.2.1
|
None
|
SRR22249523
|
HR-TB
|
lineage1.1.2
|
None
|
ERR4553551
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827794
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR6797528
|
HR-TB
|
lineage1.1.3.1
|
None
|
SAMN02380987
|
MDR-TB
|
lineage3.1.2.1
|
ug
|
ERR13266853
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13284927
|
MDR-TB
|
lineage3
|
None
|
SRR29017232
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017448
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR13284335
|
MDR-TB
|
lineage4.8
|
None
|
SRR4423144
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR13261987
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR10828196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772421
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553566
|
MDR-TB
|
lineage4
|
None
|
SRR29772795
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR987760
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797747
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR1654699
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR552415
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR4798046
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553576
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5979434
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4821159
|
MDR-TB
|
lineage4.2.2.1
|
gb
|
ERR4800634
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR775794
|
MDR-TB
|
lineage2.1
|
th
|
ERR4830956
|
Pre-XDR-TB
|
lineage2.2.1.1
|
np
|
SRR1173751
|
MDR-TB
|
lineage3
|
None
|
ERR4553683
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR4553831
|
HR-TB
|
|
None
|
ERR4553848
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2513224
|
HR-TB
|
lineage3.1.2.1
|
gb
|
SRR4423135
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29017213
|
XDR-TB
|
lineage4
|
None
|
SRR29017659
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707161
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR4872146
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1173343
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175207
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR24112526
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4553777
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488519
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR22175210
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR10680199
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4815908
|
HR-TB
|
lineage3
|
gb
|
ERR11044775
|
MDR-TB
|
lineage3
|
None
|
SRR5341403
|
HR-TB
|
lineage3
|
in
|
SRR5341471
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13266561
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798682
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798779
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799375
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR22175176
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR28044902
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4817810
|
HR-TB
|
lineage4.2.2.2
|
gb
|
ERR2516971
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR4553940
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR294223
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR2707006
|
MDR-TB
|
lineage4.9
|
cd
|
ERR10680135
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1199111
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR1654702
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR11662422
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827311
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4818182
|
HR-TB
|
lineage3.1.2.1
|
None
|
SRR5341286
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827443
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29017221
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4798326
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR13243563
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR24112527
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4553947
|
MDR-TB
|
lineage4
|
None
|
ERR1199117
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707155
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4797105
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR775802
|
HR-TB
|
lineage1.1.1
|
None
|
ERR4829857
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4798610
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798593
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553623
|
MDR-TB
|
lineage2.2
|
None
|
ERR1367647
|
HR-TB
|
lineage4.2.2.2
|
None
|
ERR11050405
|
HR-TB
|
lineage5.1.4
|
None
|
SRR4423171
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553583
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10225516
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5709770
|
MDR-TB
|
lineage2.2.1.1
|
th
|
ERR13260180
|
Sensitive
|
lineage4.8
|
None
|
ERR047884
|
MDR-TB
|
lineage1.1.1
|
gb
|
SRR26937143
|
MDR-TB
|
lineage2.1
|
None
|
SRR11662211
|
MDR-TB
|
lineage1.1.1
|
None
|
SRR6797612
|
HR-TB
|
lineage4.1.1.1
|
None
|
SRR28393784
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR551953
|
MDR-TB
|
lineage4.8.1
|
sz
|
SRR29017578
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29017671
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29231548
|
MDR-TB
|
lineage5.2
|
None
|
ERR13266098
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR552534
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11067821
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR5817473
|
MDR-TB
|
lineage2.1
|
au
|
ERR4799180
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29017080
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29017401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9030534
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29017393
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR3132235
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR4553886
|
Pre-XDR-TB
|
|
None
|
SRR28393360
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393389
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28045946
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4553561
|
MDR-TB
|
|
None
|
SRR28045449
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4553863
|
Pre-XDR-TB
|
|
None
|
ERR12796623
|
MDR-TB
|
lineage3
|
None
|
SRR28393434
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4553513
|
MDR-TB
|
|
None
|
SRR28046121
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553604
|
MDR-TB
|
|
None
|
SRR29772700
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR11082469
|
MDR-TB
|
lineage4.8
|
None
|
SRR30182500
|
HR-TB
|
lineage3.1
|
None
|
ERR2707045
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4553945
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796989
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4831472
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29017240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016983
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017631
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR29017144
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR29017382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799267
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799950
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800380
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800427
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR16058722
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR5837710
|
Pre-XDR-TB
|
lineage2.2.1.1
|
th
|
ERR117725
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6797426
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR4553685
|
RR-TB
|
lineage1.1.2
|
None
|
ERR4553966
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972426
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049730
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR10828189
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29231564
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR1193880
|
Pre-XDR-TB
|
lineage4.3.2.1
|
za
|
SRR17406765
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2516999
|
MDR-TB
|
lineage3
|
gb
|
ERR4796823
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR13266543
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11067395
|
HR-TB
|
lineage3.1.1
|
None
|
ERR9119550
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR3148046
|
MDR-TB
|
lineage5.3
|
None
|
ERR752026
|
HR-TB
|
lineage1.1.1
|
th
|
ERR13290553
|
MDR-TB
|
lineage4.7
|
None
|
ERR2517074
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR11662496
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR4423783
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11080956
|
MDR-TB
|
lineage4.8
|
None
|
ERR3132128
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4797953
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR2101023
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4796629
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4797478
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25515401
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4800532
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR28045960
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2517122
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
SRR6650186
|
MDR-TB
|
lineage4
|
None
|
ERR4799546
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13261256
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR7162983
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29772438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2706940
|
MDR-TB
|
lineage4.9
|
cd
|
ERR13264957
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR4797168
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
ERR4797927
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553608
|
MDR-TB
|
lineage2.2
|
None
|
ERR4553618
|
MDR-TB
|
|
None
|
ERR4796521
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4797715
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798440
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR1049729
|
MDR-TB
|
lineage4
|
None
|
ERR551070
|
HR-TB
|
lineage6.3.3
|
None
|
ERR13261197
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR13264939
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR4423179
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4797481
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR2707150
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4796469
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR11043078
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR25827309
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800476
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2677470
|
MDR-TB
|
lineage4.3.4.2
|
de
|
SRR28044688
|
XDR-TB
|
lineage3
|
None
|
ERR4797034
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29016821
|
MDR-TB
|
lineage3
|
None
|
ERR9286154
|
HR-TB
|
lineage4.2.2.2
|
None
|
SRR29017427
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797979
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798146
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799698
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR11662424
|
MDR-TB
|
lineage1.1.1.1
|
None
|
SRR12882496
|
HR-TB
|
lineage1.1.1
|
None
|
ERR4798639
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR6797418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796775
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13267073
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4797542
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13245558
|
MDR-TB
|
La3;lineage2.2.2
|
None
|
ERR2707053
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR3105741
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR3105778
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796374
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4796597
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4797395
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800455
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR3039927
|
HR-TB
|
lineage4.9
|
None
|
ERR3132281
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9125456
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2512824
|
HR-TB
|
lineage3
|
gb
|
ERR4796949
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2600477
|
Sensitive
|
lineage4.8
|
None
|
ERR4797511
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR11489036
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4553891
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551289
|
MDR-TB
|
lineage4.8.1
|
sz
|
SRR28351275
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2516965
|
MDR-TB
|
lineage2.2.1.1
|
gb
|
ERR1035245
|
MDR-TB
|
lineage2.2.1
|
pt
|
ERR4819868
|
MDR-TB
|
lineage4.2.2.1
|
gb
|
SRR7069604
|
HR-TB
|
lineage3
|
None
|
SRR11662543
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11082937
|
MDR-TB
|
lineage4.8
|
None
|
ERR4796852
|
MDR-TB
|
lineage2.2.1.1;lineage3.1.2
|
in
|
ERR13284352
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR2516777
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
ERR294221
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4799137
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799333
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4799625
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799829
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553826
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29358136
|
HR-TB
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR4798969
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR5818592
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
ERR4799901
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553638
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822270
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR502248
|
MDR-TB
|
lineage3
|
None
|
ERR552809
|
Pre-XDR-TB
|
lineage4.8.1
|
sz
|
SRR1165601
|
MDR-TB
|
lineage4.7
|
None
|
SRR1174277
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3724799
|
MDR-TB
|
lineage4.3.4.2.1
|
cd
|
ERR4796506
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
SRR1165529
|
MDR-TB
|
lineage4.7
|
None
|
ERR13262073
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR552416
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR29231316
|
MDR-TB
|
lineage4.9
|
None
|
SRR3105771
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9119487
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR4423149
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR11662293
|
MDR-TB
|
lineage2.1
|
None
|
SRR22175179
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4799522
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13266414
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29772455
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR6797833
|
Other
|
lineage1.2.2.2
|
None
|
ERR4800308
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR2706947
|
MDR-TB
|
lineage4.9
|
cd
|
ERR2707058
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4800433
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR11488877
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4553693
|
HR-TB
|
lineage2.2.1
|
None
|
ERR12328175
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR13266526
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11156387
|
MDR-TB
|
lineage2.2.1;lineage4.3.4.1
|
None
|
SRR5341421
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR987756
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827862
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1.1
|
None
|
ERR4553821
|
MDR-TB
|
lineage4
|
None
|
ERR13261985
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11082342
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4553611
|
MDR-TB
|
lineage3.1
|
None
|
ERR4553853
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2510421
|
Pre-XDR-TB
|
lineage4.1.1.1
|
pk
|
ERR4798745
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR11662143
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800394
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800562
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR28351568
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553716
|
MDR-TB
|
lineage4
|
None
|
ERR4553968
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR29231301
|
MDR-TB
|
lineage4.9
|
None
|
SRR25827577
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29231543
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR29231812
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR29231855
|
MDR-TB
|
lineage4.9
|
None
|
ERR4830804
|
MDR-TB
|
lineage4.2.2.1
|
et
|
ERR4799665
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR7517720
|
RR-TB
|
lineage3.1.2.1
|
None
|
ERR13261068
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266519
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553656
|
HR-TB
|
lineage2.2.1
|
None
|
SRR4423154
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424911
|
HR-TB
|
lineage3
|
None
|
ERR4799552
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800298
|
HR-TB
|
lineage3
|
in
|
ERR4799810
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800620
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13281466
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
ERR13262154
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR1367617
|
HR-TB
|
lineage4.2.2.2
|
None
|
ERR1367648
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29230987
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4423738
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4553654
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553938
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290551
|
MDR-TB
|
lineage4.7
|
None
|
ERR4797083
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800483
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR7162978
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8774435
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4798724
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799709
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29017390
|
MDR-TB
|
lineage3
|
None
|
ERR4553457
|
MDR-TB
|
|
None
|
ERR4553810
|
MDR-TB
|
|
None
|
ERR4553921
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093376
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6397155
|
HR-TB
|
lineage3
|
None
|
SRR11662462
|
MDR-TB
|
lineage1.1.1
|
None
|
SRR19128052
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR11662611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798968
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR11044257
|
MDR-TB
|
lineage4.8
|
None
|
SRR1173572
|
MDR-TB
|
lineage3
|
None
|
ERR4553732
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4829978
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR22175200
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800613
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR11662332
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR5067461
|
HR-TB
|
lineage2.1
|
vn
|
ERR1367677
|
HR-TB
|
lineage4.6.1.2
|
None
|
SRR1049573
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR5817467
|
MDR-TB
|
lineage3
|
au
|
SRR21677052
|
HR-TB
|
lineage4.8
|
None
|
ERR718386
|
MDR-TB
|
lineage1.1.1
|
th
|
SRR28044689
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12882566
|
MDR-TB
|
lineage3
|
None
|
SAMN02628506
|
MDR-TB
|
lineage3
|
ir
|
SRR29016851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR987746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082442
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR2101021
|
MDR-TB
|
lineage3
|
None
|
ERR13284187
|
MDR-TB
|
lineage4.8
|
None
|
ERR4798250
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR9119642
|
MDR-TB
|
lineage5.1.1
|
None
|
ERR4799907
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR718514
|
MDR-TB
|
lineage1.1.1
|
th
|
SRR1062930
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR245747
|
HR-TB
|
lineage3
|
mw
|
ERR11080892
|
MDR-TB
|
lineage3
|
None
|
SRR6896250
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR2100376
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR25515185
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR22175177
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29289374
|
XDR-TB
|
lineage3
|
None
|
SRR5818580
|
MDR-TB
|
lineage4.2.2.1
|
dj
|
ERR4796867
|
MDR-TB
|
lineage2.2.1.1;lineage3.1.2
|
in
|
ERR552780
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR212021
|
MDR-TB
|
lineage4.3.3
|
mw
|
SRR29231557
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR551204
|
HR-TB
|
lineage4.7
|
sz
|
SRR5709765
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4799006
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SAMN02567685
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6797637
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR3078004
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2707052
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707198
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2707000
|
MDR-TB
|
lineage4.1.2
|
cd
|
ERR3132224
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798736
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|