Rv3696c - c.1446A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
0 RR-TB
25 HR-TB
62 MDR-TB
9 Pre-XDR-TB
3 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.3.3 | 12 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 49 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 12 |
| La3;M.canetti;lineage2.1;lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 108 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR551070 | HR-TB | lineage6.3.3 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2677433 | MDR-TB | lineage2.2.1 | de | SRR24256177 | MDR-TB | lineage2.2.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR8773608 | MDR-TB | lineage2.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11044091 | MDR-TB | lineage2.2.1 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR13284157 | XDR-TB | lineage2.2.1 | None | SRR11349190 | Sensitive | lineage2.2.1 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2307542 | MDR-TB | lineage2.2.1 | None | ERR8773606 | MDR-TB | lineage2.2.1 | None | ERR5865867 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2307514 | MDR-TB | lineage2.2.1 | None | ERR10680201 | MDR-TB | lineage6.3.3 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SRR24256154 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714909 | MDR-TB | lineage2.2.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR18714832 | MDR-TB | lineage2.2.1 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4822295 | MDR-TB | lineage2.2.1 | de | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13276193 | MDR-TB | lineage2.2.1 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2516327 | MDR-TB | lineage2.2.1 | be | ERR3639751 | XDR-TB | lineage2.2.1 | None | SRR6831888 | MDR-TB | lineage2.2.1 | None | SRR10315524 | Sensitive | lineage2.2.1 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR10680002 | MDR-TB | lineage6.3.3 | None | ERR2307595 | MDR-TB | lineage2.2.1 | None | ERR10680102 | MDR-TB | lineage6.3.3 | None | SRR29539652 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256231 | MDR-TB | lineage2.2.1 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR10680052 | MDR-TB | lineage6.3.3 | None | SRR29539552 | MDR-TB | lineage2.2.1 | None | SRR6832746 | MDR-TB | lineage2.2.1 | None | SRR6256974 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284360 | MDR-TB | lineage2.2.1 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR10680178 | MDR-TB | lineage6.3.3 | None | SRR29539560 | MDR-TB | lineage2.2.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR10680088 | MDR-TB | lineage6.3.3 | None | ERR10680060 | MDR-TB | lineage6.3.3 | None | ERR10680174 | MDR-TB | lineage6.3.3 | None | ERR10680200 | MDR-TB | lineage6.3.3 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6832442 | MDR-TB | lineage2.2.1 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR6831749 | MDR-TB | lineage2.2.1 | None | ERR11082858 | MDR-TB | lineage2.2.1 | None | SRR24256353 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715075 | MDR-TB | lineage2.2.1 | None | ERR10680151 | MDR-TB | lineage6.3.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR10877865 | MDR-TB | lineage2.2.1 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR14782739 | MDR-TB | lineage2.2.1 | None | ERR10680188 | MDR-TB | lineage6.3.3 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR24256175 | MDR-TB | lineage2.2.1 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29539269 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081995 | XDR-TB | lineage2.2.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13276363 | MDR-TB | lineage2.2.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR24256285 | MDR-TB | lineage2.2.1 | None | SRR6832798 | MDR-TB | lineage2.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR10877863 | MDR-TB | lineage2.2.1 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29539682 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284531 | MDR-TB | lineage2.2.1 | None | SRR29539737 | MDR-TB | lineage2.2.1 | None | ERR5865868 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315525 | Sensitive | lineage2.2.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6831710 | MDR-TB | lineage2.2.1 | None | ERR2307548 | MDR-TB | lineage2.2.1 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6256971 | Pre-XDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
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