Run ID: ERR552562
Sample name:
Date: 15-08-2022 10:51:31
Number of reads: 388863
Percentage reads mapped: 99.39
Strain: lineage1.2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.99 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 1.0 |
lineage1.2.2.1 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4408087 | c.115delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9522 | p.Pro741Ser | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620128 | p.Gly80Trp | missense_variant | 0.12 |
rpoB | 759750 | c.-57G>T | upstream_gene_variant | 0.12 |
rpoB | 760124 | c.318C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 766842 | p.Val1158Asp | missense_variant | 0.12 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781592 | c.33T>A | synonymous_variant | 0.13 |
fbiC | 1303675 | p.Gly249Ser | missense_variant | 0.12 |
Rv1258c | 1407278 | c.63G>T | synonymous_variant | 0.17 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472728 | n.883G>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834957 | c.1416C>T | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102802 | p.Asn81Tyr | missense_variant | 0.13 |
katG | 2153987 | p.Glu709Lys | missense_variant | 0.15 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154893 | p.Glu407Lys | missense_variant | 0.12 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222183 | c.976_981dupCTTTGG | conservative_inframe_insertion | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2519341 | c.1227G>A | synonymous_variant | 1.0 |
kasA | 2519353 | p.Phe413Leu | missense_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3067155 | c.-964C>T | upstream_gene_variant | 0.12 |
thyA | 3074018 | p.Phe152Leu | missense_variant | 0.1 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087895 | c.1081delG | frameshift_variant | 0.5 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
Rv3083 | 3449329 | p.Arg276Cys | missense_variant | 0.13 |
fprA | 3473826 | c.-181C>T | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3641298 | c.-237G>A | upstream_gene_variant | 1.0 |
fbiB | 3642518 | c.984C>T | synonymous_variant | 1.0 |
ddn | 3987145 | p.Gln101Pro | missense_variant | 0.11 |
clpC1 | 4040241 | p.Thr155Phe | missense_variant | 0.12 |
clpC1 | 4040250 | p.Glu152Gly | missense_variant | 0.11 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240731 | p.Asn290Ile | missense_variant | 0.12 |
embC | 4240750 | c.888C>T | synonymous_variant | 1.0 |
embC | 4240997 | p.Trp379Arg | missense_variant | 0.13 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242662 | p.Ser934Pro | missense_variant | 0.11 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4246661 | p.Val50Met | missense_variant | 0.2 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 0.97 |
ethA | 4326714 | p.Gln254Glu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |