Run ID: SRR7131142
Sample name:
Date: 04-04-2023 18:46:44
Number of reads: 1480021
Percentage reads mapped: 99.99
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.14 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777268 | c.1213C>T | synonymous_variant | 1.0 |
mmpL5 | 777945 | p.Pro179Leu | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673235 | c.-205C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.2 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ribD | 2987075 | c.237C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.57 |
aftB | 4268623 | p.Trp72Gly | missense_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338635 | c.-114A>C | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |