Rv0407 - c.546C>G
Drug resistance types
35 Sensitive
6 RR-TB
8 HR-TB
108 MDR-TB
119 Pre-XDR-TB
9 XDR-TB
18 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 268 |
| La1.7;lineage4.9 | 3 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.9 | 7 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage2.2.1;lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4.8.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 4 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 303 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR1873410 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR3675385 | Other | La1.7;lineage4.9 | None |
| ERR1633895 | Sensitive | lineage2.2.1 | za |
| ERR1873470 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR553117 | RR-TB | lineage2.2.1 | None |
| SRR21276966 | Sensitive | lineage2.2.1 | None |
| SRR10869276 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8025622 | HR-TB | lineage2.2.1 | None |
| ERR9030318 | MDR-TB | lineage2.2.1 | None |
| ERR10748379 | MDR-TB | lineage2.2.1 | None |
| SRR14519869 | Sensitive | lineage2.2.1 | None |
| SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None |
| ERR1452613 | Sensitive | lineage2.2.1 | None |
| ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za |
| SRR6045548 | Sensitive | lineage4.9 | None |
| ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10748349 | MDR-TB | lineage2.2.1;lineage4.3.3 | None |
| ERR13249446 | Other | lineage2.2.1 | None |
| SRR29094011 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096836 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10748152 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR10869058 | MDR-TB | lineage2.2.1 | None |
| ERR9992829 | MDR-TB | lineage2.2.1 | None |
| SRR5341330 | Other | lineage4.9 | None |
| SRR29094090 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093540 | MDR-TB | lineage2.2.1 | None |
| ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8025420 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10112885 | MDR-TB | lineage2.2.1 | None |
| SRR29096799 | MDR-TB | lineage2.2.1 | None |
| SRR29093478 | Sensitive | lineage2.2.1 | None |
| SRR29093314 | MDR-TB | lineage2.2.1 | None |
| ERR13289017 | RR-TB | lineage2.2.1 | None |
| SRR29093606 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR553118 | RR-TB | lineage2.2.1 | None |
| SRR29096509 | MDR-TB | lineage2.2.1;lineage4.1.1.3 | None |
| SRR29096571 | MDR-TB | lineage2.2.1 | None |
| ERR13288781 | RR-TB | lineage2.2.1 | None |
| SRR29093617 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096112 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093884 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8975912 | XDR-TB | lineage2.2.1 | None |
| SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13286097 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093827 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093583 | MDR-TB | lineage2.2.1 | None |
| SRR29096216 | MDR-TB | lineage2.2.1 | None |
| SRR29096302 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9119984 | MDR-TB | lineage2.2.1 | None |
| SRR29093421 | MDR-TB | lineage2.2.1 | None |
| SRR29093335 | MDR-TB | lineage2.2.1 | None |
| ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093506 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093354 | MDR-TB | lineage2.2.1 | None |
| SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29094068 | MDR-TB | lineage2.2.1 | None |
| SRR8758881 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29094081 | MDR-TB | lineage2.2.1 | None |
| SRR29093527 | MDR-TB | lineage2.2.1 | None |
| ERR5758354 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093488 | MDR-TB | lineage2.2.1 | None |
| SRR29096827 | MDR-TB | lineage2.2.1 | None |
| SRR29093804 | MDR-TB | lineage2.2.1 | None |
| SRR26112687 | Sensitive | lineage2.2.1 | None |
| ERR3797046 | HR-TB | lineage4.9 | None |
| ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None |
| SRR29094046 | MDR-TB | lineage2.2.1 | None |
| SRR29094051 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9992782 | MDR-TB | lineage2.2.1 | None |
| SRR16156774 | MDR-TB | lineage2.2.1 | None |
| ERR10112834 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093618 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR5987378 | MDR-TB | lineage2.2.1 | None |
| SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4811493 | HR-TB | lineage4.9 | None |
| ERR10748116 | MDR-TB | lineage2.2.1 | None |
| ERR10748299 | MDR-TB | lineage2.2.1 | None |
| SRR6896572 | Sensitive | lineage2.2.1 | None |
| ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911542 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911548 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911547 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | za |
| ERR7911553 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911557 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911579 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | za |
| ERR7911611 | XDR-TB | lineage2.2.1 | za |
| ERR7911615 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR11774978 | MDR-TB | lineage2.2.1 | None |
| ERR7911653 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR7911652 | MDR-TB | lineage2.2.1 | za |
| ERR7911664 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR3283055 | HR-TB | lineage4.9 | None |
| ERR11774833 | MDR-TB | lineage2.2.1 | None |
| ERR1873474 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9120092 | Sensitive | lineage2.2.1 | None |
| DRR189121 | Sensitive | lineage2.2.1 | None |
| SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None |
| ERR4011076 | MDR-TB | lineage2.2.1 | None |
| SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR10112905 | MDR-TB | lineage2.2.1 | None |
| SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None |
| ERR10748099 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9119983 | MDR-TB | lineage2.2.1 | None |
| ERR752229 | Other | lineage4.5 | None |
| SRR10869121 | Sensitive | lineage2.2.1 | None |
| ERR9119713 | MDR-TB | lineage2.2.1 | None |
| SRR29096772 | MDR-TB | lineage2.2.1 | None |
| ERR279532 | Other | lineage2.2.1;lineage4.3.2.1 | None |
| ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4831584 | MDR-TB | lineage2.2.1 | None |
| SRR5535933 | Other | lineage4.9 | None |
| SRR7131183 | MDR-TB | lineage2.2.1 | None |
| ERR279594 | Sensitive | lineage2.2.1 | None |
| ERR13286137 | XDR-TB | lineage2.2.1 | None |
| ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093563 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093666 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10748240 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093576 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9120091 | Sensitive | lineage2.2.1 | None |
| SRR29096519 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093636 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13260453 | Sensitive | lineage2.2.1 | None |
| SRR29096481 | MDR-TB | lineage2.2.1 | None |
| ERR10748382 | MDR-TB | lineage2.2.1 | None |
| ERR10748502 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1873556 | Pre-XDR-TB | lineage2.2.1 | za |
| SRR29093283 | Pre-XDR-TB | lineage2.2.1;lineage4.3.2.1 | None |
| SRR29097095 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096974 | MDR-TB | lineage2.2.1 | None |
| ERR13286098 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096417 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096574 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR5987342 | Sensitive | lineage2.2.1 | None |
| ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093635 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1034958 | Sensitive | lineage2.2.1 | za |
| SRR29096377 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9992778 | MDR-TB | lineage2.2.1 | None |
| SRR29096612 | MDR-TB | lineage2.2.1 | None |
| SRR29093568 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093256 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR11464949 | Sensitive | lineage2.2.1 | None |
| SRR29093807 | MDR-TB | lineage2.2.1 | None |
| ERR10748310 | MDR-TB | lineage2.2.1 | None |
| SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29094057 | MDR-TB | lineage2.2.1 | None |
| ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR5987226 | MDR-TB | lineage2.2.1 | None |
| SRR29093696 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8025455 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za |
| SRR29096107 | Sensitive | lineage4.9 | None |
| ERR4813420 | Pre-XDR-TB | lineage4.1.1.3 | pe |
| SRR29096301 | MDR-TB | lineage2.2.1 | None |
| SRR29096855 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093655 | MDR-TB | lineage2.2.1 | None |
| SAMEA2535152 | RR-TB | lineage2.2.1 | sz |
| SRR29093431 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096499 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | None |
| SRR29093699 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093489 | MDR-TB | lineage2.2.1 | None |
| SRR29093763 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR10748288 | MDR-TB | lineage2.2.1 | None |
| SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093276 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13292506 | MDR-TB | lineage2.2.1 | None |
| SRR29096489 | MDR-TB | lineage2.2.1 | None |
| ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093259 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4799513 | HR-TB | lineage2.2 | None |
| SRR29094019 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR17703714 | Sensitive | lineage2.2.1 | None |
| SRR29093628 | MDR-TB | lineage2.2.1 | None |
| ERR10748166 | MDR-TB | lineage2.2.1 | None |
| SRR29093562 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093263 | MDR-TB | lineage2.2.1 | None |
| SRR29096839 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093840 | MDR-TB | lineage2.2.1 | None |
| ERR13288928 | MDR-TB | lineage2.2.1 | None |
| SRR29096351 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR11466041 | Sensitive | lineage2.2.1 | None |
| ERR4829277 | MDR-TB | lineage2.2.1 | None |
| DRR188820 | Other | lineage2.2.1 | None |
| ERR1750918 | Sensitive | lineage2.2.1 | za |
| ERR495063 | Other | lineage2.2.1;lineage4.3.2.1 | None |
| ERR2660450 | MDR-TB | lineage2.2.1 | None |
| SRR2101667 | Sensitive | lineage2.2.1 | None |
| SRR29096347 | MDR-TB | lineage2.2.1 | None |
| ERR4010972 | Sensitive | lineage2.2.1 | None |
| ERR4011077 | MDR-TB | lineage2.2.1 | None |
| ERR9992832 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9119875 | MDR-TB | lineage2.2.1 | None |
| SRR29096321 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096947 | MDR-TB | lineage2.2.1 | None |
| SRR6981923 | Sensitive | lineage2.2.1 | None |
| SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None |
| ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1750933 | Sensitive | lineage2.2.1 | za |
| ERR8025496 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR11466015 | Sensitive | lineage2.2.1 | None |
| ERR495125 | Sensitive | lineage2.2.1 | None |
| ERR6362178 | MDR-TB | lineage2.2.1 | None |
| SRR6896416 | Sensitive | lineage2.2.1 | None |
| SRR17732456 | Sensitive | lineage2.2.1 | None |
| ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4011058 | MDR-TB | lineage2.2.1 | None |
| ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093757 | MDR-TB | lineage2.2.1 | None |
| SRR29096298 | MDR-TB | lineage2.2.1 | None |
| SRR29096816 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096310 | MDR-TB | lineage2.2.1 | None |
| SRR29096668 | MDR-TB | lineage2.2.1 | None |
| ERR4830353 | Other | La1.7 | None |
| ERR8975808 | XDR-TB | lineage2.2.1 | None |
| SRR29096337 | MDR-TB | lineage2.2.1 | None |
| SRR29096569 | MDR-TB | lineage2.2.1 | None |
| ERR3287383 | MDR-TB | lineage4.1.1.3 | pe |
| SRR3675267 | Other | La1.7;lineage4.9 | None |
| ERR5987274 | MDR-TB | lineage2.2.1 | None |
| ERR4831536 | XDR-TB | lineage2.2.1 | None |
| SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4896313 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR553116 | RR-TB | lineage2.2.1 | None |
| SRR29093825 | MDR-TB | lineage2.2.1 | None |
| SRR29093546 | MDR-TB | lineage2.2.1 | None |
| SRR29096856 | MDR-TB | lineage2.2.1 | None |
| SRR29093891 | MDR-TB | lineage2.2.1 | None |
| ERR2660538 | Sensitive | lineage2.2.1 | None |
| SRR29093548 | MDR-TB | lineage2.2.1 | None |
| SRR29096398 | MDR-TB | lineage2.2.1 | None |
| SRR15723133 | Other | lineage2.2.1 | None |
| SRR15723238 | HR-TB | lineage2.2.1 | None |
| SRR16156819 | MDR-TB | lineage2.2.1 | None |
| SRR29093294 | MDR-TB | lineage2.2.1 | None |
| SRR29056303 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096487 | MDR-TB | lineage2.2.1 | None |
| SRR29093501 | MDR-TB | lineage2.2.1 | None |
| SRR29096616 | MDR-TB | lineage2.2.1 | None |
| ERR10748133 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093656 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8975714 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8975031 | MDR-TB | lineage2.2.1 | None |
| ERR13286117 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093537 | MDR-TB | lineage2.2.1 | None |
| ERR13288954 | XDR-TB | lineage2.2.1 | None |
| SRR29096511 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1633836 | Other | lineage2.2.1;lineage4.3.2.1 | za |
| SRR29093846 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR2515527 | Sensitive | lineage2.2.1 | za |
| SRR29093765 | XDR-TB | lineage2.2.1 | None |
| ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9806878 | MDR-TB | lineage2.2.1 | None |
| SRR29055852 | Sensitive | lineage2.2.1 | None |
| SRR29094012 | MDR-TB | lineage2.2.1.1 | None |
| ERR1750917 | Sensitive | lineage2.2.1 | za |
| SRR29096349 | MDR-TB | lineage2.2.1 | None |
| ERR4831117 | HR-TB | lineage4.9;lineage7 | None |
| SRR29096479 | MDR-TB | lineage2.2.1 | None |
| SRR3675488 | Other | La1.7;lineage4.9 | None |
| SRR29096372 | MDR-TB | lineage2.2.1 | None |
| ERR13288994 | MDR-TB | lineage2.2.1 | None |
| SRR29096858 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096629 | MDR-TB | lineage2.2.1 | None |
| SRR29093854 | MDR-TB | lineage2.2.1 | None |
| SRR29094075 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29096352 | MDR-TB | lineage2.2.1 | None |
| SRR29093832 | MDR-TB | lineage2.2.1 | None |
| ERR4831535 | XDR-TB | lineage2.2.1 | None |
| SRR29096596 | MDR-TB | lineage2.2.1 | None |
| ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za |
| ERR2660475 | Sensitive | lineage2.2.1 | None |
| ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None |
| ERR10112870 | MDR-TB | lineage2.2.1 | None |
| ERR4011051 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9119830 | MDR-TB | lineage2.2.1 | None |
| SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR3340710 | MDR-TB | lineage2.2.1;lineage4.1.1.3 | za |
| SRR29093596 | MDR-TB | lineage2.2.1 | None |
| SRR29096952 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29093584 | MDR-TB | lineage2.2.1 | None |
| ERR13289403 | XDR-TB | lineage2.2.1 | None |
| SRR29096597 | MDR-TB | lineage2.2.1 | None |
| SRR29096513 | MDR-TB | lineage2.2.1 | None |
| ERR8975774 | MDR-TB | lineage2.2.1 | None |
| SRR29093270 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR3675222 | Other | La1.7 | None |
