Rv0407 - c.546C>G
Drug resistance types
33 Sensitive
6 RR-TB
8 HR-TB
78 MDR-TB
91 Pre-XDR-TB
9 XDR-TB
18 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 212 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage2.2.1;lineage4.8.1 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 3 |
| lineage4.9 | 6 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.3.3 | 2 |
| La1.7 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2660538 | Sensitive | lineage2.2.1 | None | ERR8975912 | XDR-TB | lineage2.2.1 | None | SRR15723133 | Other | lineage2.2.1 | None | SRR15723238 | HR-TB | lineage2.2.1 | None | ERR11464949 | Sensitive | lineage2.2.1 | None | ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za | SRR29093506 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093431 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093583 | MDR-TB | lineage2.2.1 | None | SRR8758881 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093854 | MDR-TB | lineage2.2.1 | None | SRR29093562 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR26112687 | Sensitive | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29096372 | MDR-TB | lineage2.2.1 | None | ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None | ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992782 | MDR-TB | lineage2.2.1 | None | ERR13260453 | Sensitive | lineage2.2.1 | None | ERR13249446 | Other | lineage2.2.1 | None | SRR16156774 | MDR-TB | lineage2.2.1 | None | ERR10112834 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za | ERR11466041 | Sensitive | lineage2.2.1 | None | ERR4829277 | MDR-TB | lineage2.2.1 | None | DRR188820 | Other | lineage2.2.1 | None | SRR29096799 | MDR-TB | lineage2.2.1 | None | SRR6896572 | Sensitive | lineage2.2.1 | None | ERR2660475 | Sensitive | lineage2.2.1 | None | ERR4011051 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119830 | MDR-TB | lineage2.2.1 | None | ERR4010972 | Sensitive | lineage2.2.1 | None | SRR29096597 | MDR-TB | lineage2.2.1 | None | SRR29096513 | MDR-TB | lineage2.2.1 | None | ERR4011077 | MDR-TB | lineage2.2.1 | None | SRR29093270 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096321 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096947 | MDR-TB | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR7911611 | XDR-TB | lineage2.2.1 | za | ERR1873470 | Pre-XDR-TB | lineage2.2.1 | za | ERR9030318 | MDR-TB | lineage2.2.1 | None | ERR10748379 | MDR-TB | lineage2.2.1 | None | ERR279532 | Other | lineage2.2.1;lineage4.3.2.1 | None | ERR11466015 | Sensitive | lineage2.2.1 | None | ERR6362178 | MDR-TB | lineage2.2.1 | None | SRR6896416 | Sensitive | lineage2.2.1 | None | ERR7911553 | Pre-XDR-TB | lineage2.2.1 | za | SRR5535933 | Other | lineage4.9 | None | ERR13288781 | RR-TB | lineage2.2.1 | None | SRR7131183 | MDR-TB | lineage2.2.1 | None | ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za | ERR279594 | Sensitive | lineage2.2.1 | None | ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093563 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093666 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748240 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR10748152 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748382 | MDR-TB | lineage2.2.1 | None | ERR10748502 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za | SRR10869058 | MDR-TB | lineage2.2.1 | None | SRR5341330 | Other | lineage4.9 | None | SRR29096974 | MDR-TB | lineage2.2.1 | None | ERR13286098 | Pre-XDR-TB | lineage2.2.1 | None | SRR2101667 | Sensitive | lineage2.2.1 | None | ERR4896313 | Pre-XDR-TB | lineage2.2.1 | None | ERR553116 | RR-TB | lineage2.2.1 | None | ERR7911542 | Pre-XDR-TB | lineage2.2.1 | za | ERR553118 | RR-TB | lineage2.2.1 | None | ERR9992778 | MDR-TB | lineage2.2.1 | None | SRR16156819 | MDR-TB | lineage2.2.1 | None | ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093527 | MDR-TB | lineage2.2.1 | None | SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987226 | MDR-TB | lineage2.2.1 | None | ERR7911548 | Pre-XDR-TB | lineage2.2.1 | za | ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za | ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None | ERR13286097 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096499 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | None | ERR2515527 | Sensitive | lineage2.2.1 | za | SAMEA2535152 | RR-TB | lineage2.2.1 | sz | ERR5758354 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806878 | MDR-TB | lineage2.2.1 | None | ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096310 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR17703714 | Sensitive | lineage2.2.1 | None | ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za | ERR10748166 | MDR-TB | lineage2.2.1 | None | SRR29096398 | MDR-TB | lineage2.2.1 | None | ERR5987378 | MDR-TB | lineage2.2.1 | None | ERR4831535 | XDR-TB | lineage2.2.1 | None | ERR7911579 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | za | ERR10748299 | MDR-TB | lineage2.2.1 | None | SRR29093655 | MDR-TB | lineage2.2.1 | None | ERR11774978 | MDR-TB | lineage2.2.1 | None | ERR495063 | Other | lineage2.2.1;lineage4.3.2.1 | None | SRR29093478 | Sensitive | lineage2.2.1 | None | SRR29093846 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093765 | XDR-TB | lineage2.2.1 | None | ERR9120092 | Sensitive | lineage2.2.1 | None | SRR29093596 | MDR-TB | lineage2.2.1 | None | SRR29096952 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093584 | MDR-TB | lineage2.2.1 | None | ERR13289403 | XDR-TB | lineage2.2.1 | None | DRR189121 | Sensitive | lineage2.2.1 | None | ERR10112905 | MDR-TB | lineage2.2.1 | None | SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975774 | MDR-TB | lineage2.2.1 | None | ERR9119983 | MDR-TB | lineage2.2.1 | None | SRR3675222 | Other | La1.7 | None | SRR10869121 | Sensitive | lineage2.2.1 | None | SRR29093548 | MDR-TB | lineage2.2.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR1750933 | Sensitive | lineage2.2.1 | za | SRR29093421 | MDR-TB | lineage2.2.1 | None | SRR29096772 | MDR-TB | lineage2.2.1 | None | SRR10869276 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025622 | HR-TB | lineage2.2.1 | None | SRR29096827 | MDR-TB | lineage2.2.1 | None | SRR29093840 | MDR-TB | lineage2.2.1 | None | ERR7911664 | Pre-XDR-TB | lineage2.2.1 | za | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR495125 | Sensitive | lineage2.2.1 | None | SRR17732456 | Sensitive | lineage2.2.1 | None | ERR4831584 | MDR-TB | lineage2.2.1 | None | SRR29096855 | Pre-XDR-TB | lineage2.2.1 | None | ERR1452613 | Sensitive | lineage2.2.1 | None | ERR4011058 | MDR-TB | lineage2.2.1 | None | SRR29093656 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911615 | Pre-XDR-TB | lineage2.2.1 | za | SRR29093757 | MDR-TB | lineage2.2.1 | None | SRR29096298 | MDR-TB | lineage2.2.1 | None | ERR9120091 | Sensitive | lineage2.2.1 | None | SRR29096596 | MDR-TB | lineage2.2.1 | None | SRR29096629 | MDR-TB | lineage2.2.1 | None | ERR3287383 | MDR-TB | lineage4.1.1.3 | pe | ERR13288954 | XDR-TB | lineage2.2.1 | None | ERR4831536 | XDR-TB | lineage2.2.1 | None | ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288994 | MDR-TB | lineage2.2.1 | None | SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748310 | MDR-TB | lineage2.2.1 | None | SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093827 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119984 | MDR-TB | lineage2.2.1 | None | ERR10748133 | Pre-XDR-TB | lineage2.2.1 | None | ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975714 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975031 | MDR-TB | lineage2.2.1 | None | ERR13286117 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813420 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR29093617 | Pre-XDR-TB | lineage2.2.1 | None | ERR1633836 | Other | lineage2.2.1;lineage4.3.2.1 | za | ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None | ERR1750917 | Sensitive | lineage2.2.1 | za | ERR10748288 | MDR-TB | lineage2.2.1 | None | ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911652 | MDR-TB | lineage2.2.1 | za | ERR4799513 | HR-TB | lineage2.2 | None | ERR7911547 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | za | ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096519 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096612 | MDR-TB | lineage2.2.1 | None | SRR29056303 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR10748116 | MDR-TB | lineage2.2.1 | None | ERR1750918 | Sensitive | lineage2.2.1 | za | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13289017 | RR-TB | lineage2.2.1 | None | ERR13288928 | MDR-TB | lineage2.2.1 | None | ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096487 | MDR-TB | lineage2.2.1 | None | ERR10112870 | MDR-TB | lineage2.2.1 | None | SRR29094081 | MDR-TB | lineage2.2.1 | None | ERR2660450 | MDR-TB | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None | ERR11774833 | MDR-TB | lineage2.2.1 | None | SRR29093807 | MDR-TB | lineage2.2.1 | None | SRR29096839 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873474 | Pre-XDR-TB | lineage2.2.1 | za | SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096347 | MDR-TB | lineage2.2.1 | None | SRR29096352 | MDR-TB | lineage2.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29096489 | MDR-TB | lineage2.2.1 | None | ERR4011076 | MDR-TB | lineage2.2.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9992832 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR9119875 | MDR-TB | lineage2.2.1 | None | ERR10748099 | Pre-XDR-TB | lineage2.2.1 | None | SRR6981923 | Sensitive | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096216 | MDR-TB | lineage2.2.1 | None | SRR29096668 | MDR-TB | lineage2.2.1 | None | ERR1873410 | Pre-XDR-TB | lineage2.2.1 | None | ERR1633895 | Sensitive | lineage2.2.1 | za | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | ERR553117 | RR-TB | lineage2.2.1 | None | ERR9119713 | MDR-TB | lineage2.2.1 | None | ERR8025496 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276966 | Sensitive | lineage2.2.1 | None | SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911653 | Pre-XDR-TB | lineage2.2.1 | za | ERR3340710 | MDR-TB | lineage2.2.1;lineage4.1.1.3 | za | ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None | SRR14519869 | Sensitive | lineage2.2.1 | None | ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093636 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR13286137 | XDR-TB | lineage2.2.1 | None | ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094075 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911557 | Pre-XDR-TB | lineage2.2.1 | za | ERR10748349 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29093263 | MDR-TB | lineage2.2.1 | None | SRR29093606 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830353 | Other | La1.7 | None | ERR8975808 | XDR-TB | lineage2.2.1 | None | SRR29093628 | MDR-TB | lineage2.2.1 | None | ERR1873556 | Pre-XDR-TB | lineage2.2.1 | za | ERR9992829 | MDR-TB | lineage2.2.1 | None | SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987342 | Sensitive | lineage2.2.1 | None | ERR8025420 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112885 | MDR-TB | lineage2.2.1 | None | ERR1034958 | Sensitive | lineage2.2.1 | za |
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