ERR552611
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14520113
|
HR-TB
|
lineage1.1.1
|
None
|
SAMN02586002
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR9907740
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR7737666
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR26112621
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR832997
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9029377
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13260081
|
XDR-TB
|
La1.2.BCG
|
None
|
ERR3256135
|
MDR-TB
|
lineage1.2.1.2
|
ph
|
SRR28393448
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11050560
|
HR-TB
|
lineage4.1.2
|
None
|
SRR28393252
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.1
|
None
|
SRR1169150
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21689849
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR12118005
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1035341
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR9993151
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992837
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4797547
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7737788
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1167304
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3256164
|
MDR-TB
|
lineage1.2.1.2.1
|
ph
|
ERR4813808
|
Pre-XDR-TB
|
lineage4.3.4.1
|
br
|
ERR7737688
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13258707
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR2677468
|
MDR-TB
|
lineage1.1.2
|
de
|
ERR4829054
|
MDR-TB
|
lineage1.2.2.2
|
it
|
SRR1196486
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799110
|
HR-TB
|
lineage3
|
in
|
ERR4813805
|
Pre-XDR-TB
|
lineage4.3.4.1
|
br
|
ERR4813445
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13289310
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR19276634
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR502927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975817
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR4813693
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5341368
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5074115
|
HR-TB
|
lineage1.1.1
|
vn
|
SRR6257066
|
HR-TB
|
lineage4.3.3
|
None
|
SAMN02586004
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11043755
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR19276635
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4812814
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287727
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287551
|
HR-TB
|
lineage4.3.3
|
None
|
SRR3732576
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8975509
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR3287868
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR779912
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2516558
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4822350
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827664
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4800417
|
HR-TB
|
lineage1.2.2.2
|
in
|
ERR4796979
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
DRR130115
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4813770
|
MDR-TB
|
lineage4.3.4.1
|
br
|
SRR21727758
|
HR-TB
|
lineage1.2.1.2
|
None
|
SRR28045264
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR4798658
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5917967
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
SRR25340907
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR7782647
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11348136
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4830871
|
MDR-TB
|
lineage2.2.1.1
|
sz
|
SRR1165244
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2515636
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR4813821
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4830561
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR25340924
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR10315463
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11488439
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3287789
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR9907754
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR10040323
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911014
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1193902
|
MDR-TB
|
lineage4.3.3
|
tm
|
SRR6398042
|
HR-TB
|
lineage1.2.1.2.1
|
ca
|
ERR9907766
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9907798
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR25340814
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR7898216
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR29055912
|
MDR-TB
|
lineage4.7
|
None
|
ERR9806649
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29274063
|
MDR-TB
|
lineage4
|
None
|
ERR4812036
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2707187
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR1352350
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR4809298
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR9217357
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR1555062
|
MDR-TB
|
lineage4.8
|
None
|
SRR1167345
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR1352351
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR9907795
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR1173150
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11488438
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR7737843
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165500
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR998763
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR1555059
|
MDR-TB
|
lineage4.8
|
None
|
SRR1172090
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4831852
|
HR-TB
|
lineage4.5
|
vn
|
ERR9907719
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9907762
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR1167344
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11775971
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR28394094
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461660
|
MDR-TB
|
lineage4
|
None
|
ERR13260272
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393983
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393539
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748274
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992627
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR10315616
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2864246
|
MDR-TB
|
lineage4.3.4.1
|
pt
|
ERR13290930
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289309
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28394206
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813392
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4828973
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1184317
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6797288
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR28393352
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1035109
|
HR-TB
|
lineage4.1.2
|
vn
|
SRR833017
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4796725
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR21276932
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911350
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1165645
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR16156806
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8380872
|
MDR-TB
|
lineage1.1.2
|
in
|
SRR5073947
|
HR-TB
|
lineage1.1.1.1;lineage4.5
|
vn
|
SRR26056461
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR13288783
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796577
|
HR-TB
|
|
None
|
SRR28393806
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02414986
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR4828816
|
MDR-TB
|
lineage4
|
None
|
SRR9971365
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971316
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR9806836
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21747038
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR11043907
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR21690876
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510338
|
MDR-TB
|
lineage1.1.2
|
pk
|
ERR7363053
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR11488816
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12062528
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR998760
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR779922
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR1165266
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR16156764
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2515242
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR29273803
|
MDR-TB
|
lineage4
|
None
|
SRR1173095
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28239961
|
HR-TB
|
lineage4.3.3
|
None
|
ERR13284780
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971130
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799075
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR4813208
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR161060
|
HR-TB
|
lineage4.3.4.2.1
|
mw
|
ERR2517124
|
MDR-TB
|
lineage1.2.1.2.1
|
gb
|
SRR16156808
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10040157
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR9119890
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10748251
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9993129
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165620
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02403515
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR270677
|
HR-TB
|
lineage1.1.2
|
None
|
SAMN02403514
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
ERR4813801
|
Pre-XDR-TB
|
lineage4.3.4.1
|
br
|
SRR12062494
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR6930921
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR1173786
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7363120
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR2516465
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR847797
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
ERR10748185
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3287425
|
MDR-TB
|
lineage4.3.3
|
pe
|
SAMN02403535
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR4813843
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR3077942
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR7737649
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR13870390
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10748445
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR16100723
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10610092
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4024607
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15368986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813878
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR2707089
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR12115304
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR13285318
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR3287664
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR9907793
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4828848
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3732578
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260271
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772513
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR7737747
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4813332
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797319
|
MDR-TB
|
lineage1.1.2
|
in
|
SRR1196716
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11773735
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707208
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR779855
|
HR-TB
|
lineage4.3.3
|
pe
|
SRR6856035
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165254
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR29341518
|
MDR-TB
|
lineage4.3
|
None
|
SRR19276637
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9907725
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9907709
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4830562
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR6362780
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9907778
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SAMN02403495
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR25207265
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907730
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR10748180
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11775627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799902
|
MDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR1172777
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29056148
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4798212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13298139
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4813859
|
MDR-TB
|
lineage4.3.4.1
|
br
|
SRR1173187
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707215
|
MDR-TB
|
lineage4.1.2
|
cd
|
ERR751553
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11081996
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR8975566
|
HR-TB
|
lineage1.2.2.1
|
None
|
SAMN02586037
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SAMN02403580
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR1173595
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR833117
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971027
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR998761
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR7517770
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2707168
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR29230785
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR8975512
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR6865994
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799942
|
HR-TB
|
lineage1.2.2.2
|
in
|
SRR16156784
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4813870
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4813894
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR10748179
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
DRR130109
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6865563
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2513358
|
HR-TB
|
lineage1.1.2
|
gb
|
SRR28393889
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393916
|
HR-TB
|
lineage4.3.3
|
None
|
SRR28394283
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22461616
|
HR-TB
|
lineage4.3.3
|
None
|
SRR28394214
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1165559
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11774887
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13288788
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13288934
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971286
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29914410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12118026
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772468
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR29772668
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR29126670
|
HR-TB
|
lineage6.3.1
|
None
|
ERR552610
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02231157
|
MDR-TB
|
lineage4.1.2
|
None
|
SAMN02350492
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
SRR10315510
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR7496513
|
MDR-TB
|
lineage1.2.1.2.1
|
us
|
ERR751458
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10869281
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR5065670
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4799589
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR6362510
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5073788
|
HR-TB
|
lineage4.1.2.1
|
vn
|
SRR832977
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR18002927
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR3732580
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393254
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29230794
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR13439853
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR1167376
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR1035039
|
MDR-TB
|
lineage4.3.2.1
|
za
|
ERR11776027
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813451
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28394282
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13290654
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534766
|
MDR-TB
|
lineage4.3.3
|
uz
|
SRR2099960
|
HR-TB
|
lineage1.1.2
|
None
|
ERR4162002
|
HR-TB
|
lineage5.1.1
|
None
|
SRR5818699
|
MDR-TB
|
lineage1.1.2
|
dj
|
ERR2516408
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2516560
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29539857
|
HR-TB
|
lineage4.1.2
|
None
|
SRR9971052
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR833014
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1167316
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR1035357
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR4831945
|
HR-TB
|
lineage4.5
|
None
|
SRR9738486
|
MDR-TB
|
lineage4
|
None
|
ERR13288782
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403494
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR1167342
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29055610
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034720
|
MDR-TB
|
lineage4
|
pe
|
SRR21887650
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1352352
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR7902750
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR8975810
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR6930897
|
XDR-TB
|
La1.2.BCG
|
None
|
SRR1140899
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4831743
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4813949
|
Pre-XDR-TB
|
lineage4.3.4.1
|
br
|
ERR4813529
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15014679
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR16156786
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6152883
|
MDR-TB
|
lineage1.2.1.2.1
|
ca
|
ERR4831753
|
HR-TB
|
lineage4.1.2.1
|
vn
|
ERR751568
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4812973
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR9907717
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9907787
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
SRR5067390
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR9907756
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR3276241
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR12117919
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1184384
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9119941
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3256171
|
HR-TB
|
lineage1.2.1.2.1
|
ph
|
SRR9970996
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2197001
|
MDR-TB
|
lineage4.5
|
None
|
SRR14801644
|
MDR-TB
|
lineage4.8
|
None
|
SRR998762
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR26399837
|
HR-TB
|
lineage1.1.1.1
|
None
|
ERR751587
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR9992640
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4822345
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR1352354
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR1352356
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR1140924
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707176
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR9907681
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR1196553
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1173339
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR15014724
|
HR-TB
|
lineage1.1.2
|
None
|
SRR16156809
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11972428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992983
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR9993071
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR924221
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971171
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10525364
|
MDR-TB
|
lineage4
|
None
|
ERR1465741
|
HR-TB
|
lineage4.1.2.1
|
pe
|
SRR28393730
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4812972
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR29017592
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR12072591
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9124906
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR7737904
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13258437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173499
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1175355
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11043530
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR12062529
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR1555058
|
MDR-TB
|
lineage4.8
|
None
|
ERR3287594
|
HR-TB
|
lineage4.3.3
|
None
|
ERR9992643
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR12118066
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1173321
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10610045
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10748268
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11080929
|
MDR-TB
|
lineage4.8
|
None
|
SRR11349195
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1169310
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR6362661
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7517767
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR1035280
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR11774892
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13261699
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812621
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4813942
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR4832030
|
MDR-TB
|
lineage4.5
|
vn
|
ERR4423635
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR751354
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2516462
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4831261
|
MDR-TB
|
lineage1.1.2
|
de
|
ERR1035342
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR9993107
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28393586
|
MDR-TB
|
lineage4.3.2;lineage4.3.3
|
None
|
ERR751628
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR21277291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26937075
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8774260
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR502890
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6511607
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR7362006
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813966
|
MDR-TB
|
lineage4.3.4.1
|
br
|
SRR24498058
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR4799766
|
HR-TB
|
lineage1.1.2
|
in
|
SRR29231320
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR29539173
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1002693
|
HR-TB
|
lineage4.3.3
|
None
|
SRR10040237
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5306022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393771
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28045492
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR28393458
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28394302
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393324
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11775609
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393550
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28351527
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR1162870
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173317
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3287552
|
HR-TB
|
lineage4.3.3
|
None
|
ERR13289266
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13286150
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261080
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR4800581
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4812881
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11068959
|
MDR-TB
|
lineage4.8
|
None
|
ERR11080830
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR10748224
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21887747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1196558
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28393642
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1352357
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR3287463
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR779915
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR1352355
|
XDR-TB
|
lineage2.2.1
|
cn
|
SAMN02403581
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR2706973
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR11773748
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28858366
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6866155
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911438
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR1352358
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR751767
|
MDR-TB
|
lineage2.2.1
|
th
|
ERR2706933
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
SRR29231559
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29231669
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4816576
|
HR-TB
|
lineage1.1.2
|
None
|
ERR2707230
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
SRR12062492
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1184309
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13276352
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR6866073
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9907670
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR7911437
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR2516024
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR4813832
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4799898
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR4800668
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9907693
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR751448
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR27069458
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13283980
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR4830004
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4830499
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR10315532
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21276944
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR1035330
|
MDR-TB
|
lineage4.3.4.1
|
br
|
SRR1162959
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173353
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971105
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28394051
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1199126
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR28409724
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4809173
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR4813932
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR1352353
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR4813950
|
Pre-XDR-TB
|
lineage4.8
|
br
|
ERR4799562
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SAMN02053771
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11488976
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5918113
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4831763
|
HR-TB
|
lineage2.2;lineage4.5
|
None
|
SRR7592368
|
MDR-TB
|
lineage4
|
None
|
SRR9971366
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2514633
|
MDR-TB
|
lineage4.3.4.1
|
gb
|
SRR10315465
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1167324
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1172353
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971188
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28119722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394027
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1035313
|
MDR-TB
|
lineage4.3.4.1
|
br
|
SRR29539176
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772715
|
Pre-XDR-TB
|
lineage1.2.2.1
|
None
|
SRR29772777
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR2515224
|
XDR-TB
|
lineage2.2.1
|
za
|
SRR9971177
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1169148
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1173782
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4025079
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971251
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28393444
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6832793
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2707180
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
SRR7517815
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13260413
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13290653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833018
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02586000
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SAMN01925652
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR29231751
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR7737900
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29289208
|
XDR-TB
|
La1.2.BCG
|
None
|
ERR2984783
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9907682
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4831627
|
MDR-TB
|
lineage4.5
|
vn
|
ERR1654697
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR28393321
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21887740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737738
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR775374
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR8975948
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971199
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9907792
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR9992632
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR21887722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830490
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SAMN02053774
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR7737920
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7911349
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488717
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992789
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02350474
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR9971191
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR552611_ERR552610
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25206980
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13870378
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13290655
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812366
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR28393629
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10748259
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4024889
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR2099967
|
HR-TB
|
lineage1.1.2
|
None
|
SRR3105750
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR7911203
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR13286090
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517031
|
MDR-TB
|
lineage1.2.1.1
|
gb
|
SAMN02053755
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR21276941
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1019153
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11488919
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR27450293
|
HR-TB
|
lineage1.1.1.1
|
None
|
ERR270667
|
HR-TB
|
lineage1.1.2
|
None
|
SRR1165668
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR25827687
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1165653
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7737802
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1169314
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7911446
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR9907752
|
MDR-TB
|
lineage4.3.4.1
|
None
|