Rv2780 - c.-53A>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
188 Sensitive
3 RR-TB
11 HR-TB
20 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
16 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.3 | 137 |
| La2;M.canetti | 1 |
| lineage2.2.1 | 5 |
| lineage4.6.1.2 | 19 |
| lineage1.1.1 | 29 |
| lineage4.3.3 | 7 |
| M.canetti | 3 |
| 2 | |
| La3;M.canetti | 8 |
| lineage3 | 4 |
| lineage4.1.2.1 | 11 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.2 | 2 |
| lineage1.1.2 | 1 |
| lineage1.1.3.1 | 2 |
| lineage4.3 | 1 |
| lineage4.4.1.1;lineage4.6.1.2 | 2 |
| lineage1.1.3;lineage4.3.3 | 1 |
| lineage1.1.2;lineage1.1.3 | 1 |
| lineage4.7 | 1 |
| lineage1.1.3;lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 239 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6650172 | Sensitive | lineage1.1.3 | None | SRR6797562 | Sensitive | lineage1.1.3 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR29126790 | Sensitive | lineage1.1.3 | None | ERR114428 | Sensitive | lineage1.1.3 | None | SRR11662504 | MDR-TB | lineage2.2.1 | None | SRR26111949 | Sensitive | lineage1.1.3 | None | SRR7535067 | Sensitive | lineage4.6.1.2 | None | SRR11662200 | MDR-TB | lineage1.1.1 | None | SRR18213805 | HR-TB | lineage1.1.3 | None | SRR21239816 | Sensitive | lineage4.3.3 | None | SRR29017409 | MDR-TB | lineage1.1.3 | None | SRR20969852 | MDR-TB | lineage2.2.1 | None | ERR4796693 | Sensitive | lineage1.1.3 | in | SRR1049728 | Sensitive | lineage4.6.1.2 | None | ERR028344 | Sensitive | lineage4.6.1.2 | None | ERR4821264 | Other | lineage1.1.3 | None | ERR4830205 | Sensitive | lineage1.1.3 | vn | SRR6797283 | Other | lineage1.1.3 | None | ERR13289899 | Other | lineage1.1.3 | None | SRR21732255 | Sensitive | lineage4.6.1.2 | None | ERR13291554 | Sensitive | lineage1.1.3 | None | ERR9125480 | Sensitive | M.canetti | None | ERR13292097 | Sensitive | lineage1.1.3 | None | SRR6650178 | Sensitive | lineage1.1.3 | None | SRR1049727 | Sensitive | lineage4.6.1.2 | None | ERR4553782 | MDR-TB | None | ERR4816093 | Sensitive | lineage1.1.3 | None | ERR4820717 | Sensitive | lineage1.1.3 | None | ERR4821187 | Sensitive | lineage1.1.3 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR29017049 | Pre-XDR-TB | lineage1.1.3 | None | SRR26112143 | Sensitive | lineage1.1.3 | None | ERR4553628 | RR-TB | lineage1.1.3 | None | SRR6650432 | Sensitive | lineage1.1.3 | None | SRR6797321 | Sensitive | lineage1.1.3 | None | SRR6797388 | Sensitive | lineage1.1.3 | None | SRR6797534 | Sensitive | lineage1.1.3 | None | SRR29017181 | MDR-TB | lineage1.1.3 | None | SRR28046103 | Other | lineage1.1.3 | None | SRR21709620 | Sensitive | lineage4.3.3 | None | SRR21686095 | Sensitive | lineage1.1.3 | None | SRR21710723 | Sensitive | lineage1.1.3 | None | SRR29053207 | Sensitive | lineage1.1.3 | None | SRR6797680 | Sensitive | lineage1.1.3 | None | SRR6797715 | Sensitive | lineage1.1.3 | None | SRR6797672 | Sensitive | lineage1.1.3 | None | SRR6797870 | Sensitive | lineage1.1.3 | None | SRR6797786 | Sensitive | lineage1.1.3 | None | SRR28859772 | Sensitive | lineage1.1.3 | None | ERR13285311 | Sensitive | lineage3 | None | SRR28859622 | Sensitive | lineage1.1.3 | None | SRR10040192 | MDR-TB | lineage2.2.1 | None | ERR13291885 | Sensitive | lineage4.3.3 | None | SRR26056415 | Sensitive | lineage1.1.3 | None | ERR1336825 | Sensitive | La3;M.canetti | None | SRR29126976 | Sensitive | lineage1.1.3 | None | ERR1198977 | Sensitive | lineage4.6.1.2 | None | SRR6797329 | Sensitive | lineage1.1.3 | None | SRR18213767 | Sensitive | lineage1.1.3 | None | SRR6797762 | Sensitive | lineage1.1.3 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR16058417 | Sensitive | lineage1.1.3 | None | SRR29017457 | MDR-TB | lineage1.1.3 | None | SRR29341608 | Sensitive | lineage1.1.3 | None | SRR1062929 | Sensitive | lineage4.6.1.2 | None | SRR29017704 | MDR-TB | lineage1.1.3 | None | SRR30182736 | Sensitive | lineage1.1.3 | None | SRR1140580 | Sensitive | lineage4.6.1.2 | None | ERR11049723 | Sensitive | lineage4.1.2.1 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR6650142 | Sensitive | lineage1.1.3 | None | SRR25340784 | Sensitive | lineage1.2.1.2.1 | None | SRR7069523 | Other | lineage1.1.3 | None | SRR13180225 | Other | lineage4.1.2.1 | None | SRR26112372 | Sensitive | lineage3.1.2 | None | ERR1198979 | Sensitive | lineage4.6.1.2 | None | ERR4818351 | Other | lineage1.1.3 | None | SRR12634620 | Sensitive | lineage4.6.1.2 | None | SRR21675941 | Sensitive | lineage1.1.3 | None | ERR1043164 | Other | La3;M.canetti | None | ERR4814768 | Other | lineage1.1.3 | None | ERR13291976 | Sensitive | lineage1.1.3 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR123930 | HR-TB | lineage1.1.3 | None | ERR4553839 | MDR-TB | lineage1.1.3 | None | ERR751884 | Sensitive | lineage1.1.1 | th | ERR768030 | Sensitive | lineage1.1.1 | th | ERR718389 | Sensitive | lineage1.1.1 | th | ERR718538 | Sensitive | lineage1.1.1 | th | ERR718433 | Sensitive | lineage1.1.1 | th | SRR28045187 | Sensitive | lineage1.1.3 | None | ERR751730 | Sensitive | lineage1.1.1 | th | SRR25827678 | Sensitive | lineage1.1.3 | None | SRR28044288 | Sensitive | lineage1.1.3 | None | ERR1043163 | Other | La3;M.canetti | None | ERR775798 | Sensitive | lineage1.1.1 | th | ERR752049 | HR-TB | lineage1.1.1 | th | ERR718278 | Sensitive | lineage1.1.1 | th | SRR28044668 | Sensitive | lineage1.1.3 | None | SRR28044457 | Sensitive | lineage1.1.3 | None | SRR26056463 | HR-TB | lineage1.1.3 | None | SRR12634562 | Sensitive | lineage4.6.1.2 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR2510661 | MDR-TB | lineage3 | it | SAMN02381039 | Sensitive | lineage4.6.1.2 | ug | ERR234163 | Sensitive | lineage4.6.1.2 | None | SRR3675559 | Sensitive | lineage1.1.3 | gb | ERR751843 | Sensitive | lineage1.1.1 | th | ERR4816554 | Sensitive | lineage1.1.3 | gb | ERR4818392 | Sensitive | lineage1.1.3 | gb | ERR2514608 | Sensitive | lineage1.1.3 | gb | SRR6045438 | Other | lineage1.1.3 | gb | SRR6045930 | Sensitive | lineage1.1.3 | gb | SRR8237358 | Sensitive | lineage2.2.1 | None | SRR6797869 | Sensitive | lineage1.1.3 | None | SRR12882478 | Sensitive | lineage1.1.3 | None | SRR6650405 | Sensitive | lineage1.1.3 | None | SRR6650417 | Other | lineage1.1.3 | None | ERR718499 | Sensitive | lineage1.1.1 | None | ERR266123 | Sensitive | M.canetti | None | SRR21710590 | Sensitive | lineage1.1.3 | None | ERR1198978 | Sensitive | lineage4.6.1.2 | None | ERR4814843 | Other | lineage1.1.3 | None | ERR4553473 | MDR-TB | lineage1.1.3 | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR25827630 | Sensitive | lineage1.1.2 | None | ERR4820689 | Sensitive | lineage4.1.2.1 | None | SRR26056411 | Sensitive | lineage1.1.3 | None | SRR22137445 | HR-TB | lineage1.1.3 | None | ERR9125652 | Sensitive | lineage1.1.3 | None | ERR386964 | Sensitive | lineage1.1.3 | None | SRR21713565 | Sensitive | lineage1.1.3 | None | SRR29440937 | Sensitive | lineage1.1.3.1 | None | ERR3273127 | MDR-TB | lineage4.3 | None | SRR6797711 | Sensitive | lineage1.1.3 | None | SRR6650150 | Sensitive | lineage1.1.3 | None | ERR11776005 | Sensitive | lineage4.1.2.1 | None | SRR6650280 | Sensitive | lineage1.1.3 | None | ERR11068087 | Sensitive | lineage1.1.3 | None | ERR9125640 | Sensitive | lineage1.1.3 | None | SRR6797588 | Other | lineage1.1.3 | None | ERR3132237 | Sensitive | lineage1.1.3 | None | ERR4553481 | MDR-TB | None | ERR4800602 | Sensitive | lineage1.1.3 | None | SRR21711124 | Sensitive | lineage1.1.3 | None | SAMEA3671493 | Sensitive | lineage4.6.1.2 | ug | SRR16058430 | Sensitive | lineage1.1.3 | None | SRR1049563 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR6797293 | Sensitive | lineage1.1.3 | None | SRR16058668 | Sensitive | M.canetti | None | SRR12634564 | Sensitive | lineage4.6.1.2 | None | SRR22251838 | Other | lineage1.1.3 | None | SRR21658773 | Sensitive | lineage1.1.3 | None | ERR538423 | Sensitive | lineage2.2.1 | None | SRR29231524 | Sensitive | lineage1.1.3;lineage4.3.3 | None | SRR6797463 | Sensitive | lineage1.1.3 | None | ERR2446118 | Sensitive | lineage4.1.2.1 | nl | SRR6797449 | Sensitive | lineage1.1.3 | None | ERR4553760 | MDR-TB | lineage1.1.3 | None | ERR13290075 | Sensitive | lineage1.1.3 | None | ERR3275215 | Sensitive | lineage4.1.2.1 | nl | SRR6650286 | Sensitive | lineage1.1.3 | None | SRR29772633 | MDR-TB | lineage3.1.2 | None | SRR6797533 | Sensitive | lineage1.1.3 | None | ERR2027219 | Sensitive | lineage1.1.3 | None | SRR29055654 | Sensitive | lineage1.1.3 | None | SRR25827750 | Sensitive | lineage1.1.3 | None | SRR29016862 | MDR-TB | lineage1.1.3 | None | SRR6650231 | Sensitive | lineage1.1.3 | None | SRR6650177 | Sensitive | lineage1.1.3 | None | SRR21240030 | Sensitive | lineage4.3.3 | None | SRR6650253 | Sensitive | lineage1.1.3 | None | SRR6650173 | Sensitive | lineage1.1.3 | None | ERR9119300 | Sensitive | lineage1.1.3 | None | SRR17406751 | Other | lineage1.1.3 | None | SRR29017177 | MDR-TB | lineage1.1.3 | None | ERR13261367 | Sensitive | lineage3 | None | SRR6797842 | Sensitive | lineage1.1.3 | None | SRR29017438 | MDR-TB | lineage1.1.3 | None | ERR1198979_ERR1198977_ERR1198978 | Sensitive | lineage4.6.1.2 | None | SRR28044899 | Sensitive | lineage1.1.3 | None | SRR21240136 | Sensitive | lineage4.3.3 | None | ERR4818202 | Sensitive | lineage1.1.3 | gb | SRR6650181 | Sensitive | lineage1.1.3 | None | SRR6650329 | Sensitive | lineage1.1.3 | None | SRR1049564 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | ERR11067887 | Sensitive | lineage4.1.2.1 | None | SRR29440934 | Sensitive | lineage1.1.3.1 | None | SRR22137437 | Sensitive | lineage1.1.3 | None | SRR28045029 | HR-TB | lineage1.1.2;lineage1.1.3 | None | SRR28859938 | Sensitive | lineage1.1.3 | None | SRR26399950 | Sensitive | lineage1.1.3 | None | ERR4820016 | Sensitive | lineage4.1.2.1 | gb | SRR6797387 | Sensitive | lineage1.1.3 | None | SRR26112368 | Sensitive | lineage1.1.3 | None | ERR278605 | Sensitive | lineage1.1.3 | None | ERR4831185 | Sensitive | lineage1.1.3 | de | ERR751724 | Sensitive | lineage1.1.1 | th | ERR751998 | Sensitive | lineage1.1.1 | th | ERR752145 | Sensitive | lineage1.1.1 | th | ERR751709 | Sensitive | lineage1.1.1 | th | ERR751749 | Sensitive | lineage1.1.1 | th | ERR752207 | Sensitive | lineage1.1.1 | th | ERR752198 | Sensitive | lineage1.1.1 | th | ERR752114 | RR-TB | lineage1.1.1 | th | ERR751750 | Sensitive | lineage1.1.1 | th | ERR752218 | Sensitive | lineage1.1.1 | th | ERR751969 | Sensitive | lineage1.1.1 | th | ERR718549 | Sensitive | lineage1.1.1 | th | ERR718202 | Sensitive | lineage1.1.1 | th | ERR752079 | Sensitive | lineage1.1.1 | th | ERR768006 | Sensitive | lineage1.1.1 | th | ERR751957 | Sensitive | lineage1.1.1 | th | SRR28045195 | Sensitive | lineage1.1.3 | None | ERR752213 | Sensitive | lineage1.1.1 | th | ERR8699113 | Sensitive | lineage4.3.3 | None | ERR123921 | Sensitive | lineage1.1.3 | None | ERR550820 | Sensitive | lineage4.1.2.1 | de | ERR400500 | Sensitive | lineage4.6.1.2 | gb | SRR2100161 | Sensitive | lineage1.1.3 | None | SRR2100277 | Sensitive | lineage1.1.3 | None | SRR2100397 | HR-TB | lineage1.1.3 | None | SRR2100430 | Sensitive | lineage1.1.3 | None | SRR2100976 | Sensitive | lineage1.1.3 | None | ERR4818125 | Sensitive | lineage1.1.3 | gb | ERR4820815 | Sensitive | lineage1.1.3 | gb | ERR4821078 | Sensitive | lineage4.1.2.1 | gb | ERR2512969 | Sensitive | lineage1.1.3 | gb | ERR2513113 | HR-TB | lineage1.1.3 | gb | SRR21240186 | Sensitive | lineage4.3.3 | None | ERR4553622 | RR-TB | lineage1.1.3 | None | ERR11049321 | Sensitive | lineage4.7 | None | SRR21689766 | Sensitive | lineage3 | None | SRR29017686 | MDR-TB | lineage1.1.3 | None | SRR6797373 | Sensitive | lineage1.1.3;lineage4.2.2.2 | None | SRR6797411 | HR-TB | lineage1.1.3 | None | SRR6797622 | Sensitive | lineage1.1.3 | None | ERR9285957 | Sensitive | lineage4.6.1.2 | None |
|---|
