SRR24799250
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6797404
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399339
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13439882
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439901
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439916
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29441059
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16588744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26399343
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13093822
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831706
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4832023
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502922
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13423534
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316395
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065427
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR9634305
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25534197
|
Sensitive
|
lineage2.2.1
|
None
|
SRR8651639
|
Other
|
lineage2.2.1
|
cn
|
SRR5065384
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5073550
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR7496512
|
Sensitive
|
lineage2.2.1
|
us
|
SRR1723755
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR21677889
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4817599
|
HR-TB
|
lineage2.2.1
|
gb
|
SRR26399413
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828266
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29017491
|
Other
|
lineage2.2.1
|
None
|
SRR28868858
|
Other
|
lineage2.2.1
|
None
|
ERR13439875
|
HR-TB
|
lineage2.2.1
|
None
|
DRR261095
|
Other
|
lineage2.2.1
|
None
|
SRR023487
|
RR-TB
|
lineage2.2.1
|
None
|
SRR10040267
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6280231
|
Other
|
lineage2.2.1
|
cn
|
SRR1723766
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR20969382
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969657
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969853
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251681
|
Other
|
lineage2.2.1
|
None
|
SRR5067396
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26937074
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR261035
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18495620
|
Sensitive
|
lineage2.2.1
|
None
|
SRR023492
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1172901
|
Sensitive
|
lineage2.2.1
|
None
|
SRR13423538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26937062
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040282
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911101
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26937008
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25207115
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651590
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13439866
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439902
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8217898
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29772522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829250
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4828731
|
Other
|
lineage2.2.1
|
vn
|
ERR4831770
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4831847
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR9119290
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5073585
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26936985
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30182477
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22249708
|
Sensitive
|
lineage2.2.1
|
None
|
SRR15723185
|
Sensitive
|
lineage2.2.1
|
None
|
ERR400400
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR5065519
|
Other
|
lineage2.2.1
|
vn
|
ERR13439854
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10305720
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969391
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9029920
|
Sensitive
|
lineage2.2.1
|
None
|
SRR27450614
|
Sensitive
|
lineage2.2.1
|
None
|
SRR17703720
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9119345
|
Sensitive
|
lineage2.2.1
|
None
|
DRR261138
|
Other
|
lineage2.2.1
|
None
|
SRR6280140
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4810844
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4810872
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR26399710
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751471
|
Sensitive
|
lineage2.2.1
|
pe
|
SRR24083642
|
Sensitive
|
lineage2.2.1
|
None
|
SRR24083717
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21279340
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6824675
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR20969841
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12416819
|
RR-TB
|
lineage2.2.1
|
None
|
ERR7911514
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5065703
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR19612258
|
Other
|
lineage2.2.1
|
None
|
SRR5073595
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5065522
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR13289328
|
RR-TB
|
lineage2.2.1
|
None
|
SRR5074105
|
HR-TB
|
lineage2.2.1
|
vn
|
DRR261024
|
Other
|
lineage2.2.1
|
None
|
SRR26399638
|
Other
|
lineage2.2.1
|
None
|
ERR2704684_ERR2704703
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16151369
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399896
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2513566
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR6824523
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR6280286
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969945
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7131237
|
Other
|
lineage2.2.1
|
None
|
SRR26399414
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3287807
|
MDR-TB
|
lineage2.2.1
|
pe
|
ERR4831922
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5065611
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4830204
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR22251917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27450348
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723758
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1723759
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4814742
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR6152674
|
HR-TB
|
lineage2.2.1
|
ca
|
SRR28046220
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4810478
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4810930
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6824344
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2517541
|
Sensitive
|
lineage2.2.1
|
nl
|
SRR26399235
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8651567
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR8651624
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13439915
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439924
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21031693
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21031731
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29126645
|
Other
|
lineage2.2.1
|
None
|
SRR30182762
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831632
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR1352305
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4828156
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4828688
|
Other
|
lineage2.2.1
|
vn
|
ERR7737780
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9125683
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12416841
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6153045
|
Sensitive
|
lineage2.2.1
|
ca
|
DRR473893
|
Sensitive
|
lineage2.2.1
|
None
|
DRR454960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24083736
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2184419
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969804
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277226
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277405
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7069464
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21733094
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29053605
|
Sensitive
|
lineage2.2.1
|
None
|
ERR1352357
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR4796757
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4828676
|
Other
|
lineage2.2.1
|
vn
|
ERR4832055
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21276932
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6152777
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR6152821
|
Other
|
lineage2.2.1
|
ca
|
SRR11972426
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1352355
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR2024902
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR26399247
|
MDR-TB
|
lineage1.1.1.1;lineage2.2.1
|
None
|
ERR4830369
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4831834
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR20969919
|
HR-TB
|
lineage2.2.1
|
None
|
ERR234098
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR22249934
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22250248
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26937052
|
Other
|
lineage2.2.1
|
None
|
SRR26399329
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831993
|
MDR-TB
|
lineage2.2.1
|
vn
|
DRR130091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16058346
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21732837
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26937065
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6280326
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR1352306
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR29053014
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073667
|
Other
|
lineage2.2.1;lineage4.1.2.1
|
vn
|
SRR6280168
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR29093839
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13258455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969459
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10306003
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10306030
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277613
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831872
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR29053034
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13291551
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2514694
|
Sensitive
|
lineage2.2.1
|
gb
|
SAMN03246487
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR27450183
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13289315
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399397
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073833
|
Other
|
lineage2.2.1
|
vn
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
SRR5065347
|
Other
|
lineage2.2.1
|
vn
|
ERR9119384
|
Other
|
lineage2.2.1
|
None
|
ERR4830243
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065336
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5067348
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR6397989
|
HR-TB
|
lineage2.2.1
|
ca
|
SRR5709790
|
Sensitive
|
lineage2.2.1
|
th
|
SRR26399903
|
HR-TB
|
lineage2.2.1
|
None
|
SRR15316078
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065412
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR21676323
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11662607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119437
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291101
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9125630
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5074193
|
Sensitive
|
lineage2.2.1
|
vn
|
DRR188696
|
Sensitive
|
lineage2.2.1
|
None
|
SRR023450
|
RR-TB
|
lineage2.2.1
|
None
|
SRR10040357
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15369037
|
Other
|
lineage2.2.1
|
None
|
ERR4810941
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723753
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR26399608
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831851
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR24083707
|
Sensitive
|
lineage2.2.1
|
None
|
SRR14520061
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10748418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812967
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR13423540
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1352353
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR13423564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911331
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR9119339
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831971
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR1144822
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277135
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277001
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29016947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21686096
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10305705
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8976106
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830323
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR21732079
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28045134
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969534
|
Sensitive
|
lineage2.2.1
|
None
|
SRR15368873
|
Other
|
lineage2.2.1
|
None
|
SRR5065272
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR26399699
|
Other
|
lineage2.2.1
|
None
|
SRR29441074
|
Other
|
lineage2.2.1
|
None
|
SRR26399456
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6280341
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR4821869
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR26399714
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065570
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR11049994
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25515377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831845
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10808597
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399576
|
Sensitive
|
lineage2.2.1
|
None
|
SRR24083619
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399280
|
Sensitive
|
lineage2.2.1
|
None
|
SRR671755
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4810894
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4813240
|
Sensitive
|
lineage2.2.1
|
pe
|
SRR29441088
|
Other
|
lineage2.2.1
|
None
|
ERR4811218
|
Other
|
lineage2.2.1
|
cn
|
ERR4830339
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR15316497
|
Other
|
lineage2.2.1
|
None
|
SRR1723754
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR22249633
|
Other
|
lineage2.2.1
|
None
|
SRR20970052
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21728709
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25628595
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29096656
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073505
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073578
|
Other
|
lineage2.2.1
|
vn
|
SRR26112269
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6824673
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6280199
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR20969840
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723767
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR1723764
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10305830
|
Other
|
lineage2.2.1
|
None
|
ERR7911139
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR20969629
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502953
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4828702
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR11662346
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831809
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR25207386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13423594
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6362540
|
RR-TB
|
lineage2.2.1
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR7737663
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810751
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR30182481
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13261576
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30182801
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29016910
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830439
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR1035086
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR15368857
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811568
|
Sensitive
|
lineage2.2.1
|
cn
|
DRR184608
|
Sensitive
|
lineage2.2.1
|
vn
|
DRR188712
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR15723184
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6152661
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR15368871
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21279356
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067220
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067451
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5073895
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR2704684
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21747069
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26937038
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22250104
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073802
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5074168
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5067563
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR23691322
|
Other
|
lineage2.2.1
|
None
|
ERR4828713
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4828728
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR6879049
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6152860
|
Sensitive
|
lineage2.2.1
|
ca
|
ERR10465886
|
Other
|
lineage2.2.1
|
None
|
SRR5067238
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR20969739
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13266225
|
MDR-TB
|
lineage2.2.1;lineage4.1.2
|
None
|
SRR25515014
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29053240
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16370542
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1352358
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR2513897
|
Sensitive
|
lineage2.2.1
|
gb
|
ERR4828477
|
Other
|
lineage2.2.1
|
None
|
ERR9119267
|
HR-TB
|
lineage2.2.1
|
None
|
SRR15315736
|
Sensitive
|
lineage2.2.1;lineage4.4.2
|
None
|
ERR4831879
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26399331
|
Other
|
lineage2.2.1
|
None
|
SRR21277083
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723762
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21710938
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7910885
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR26399342
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067308
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067243
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4811240
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11662684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175044
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25206854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399467
|
Other
|
lineage2.2.1
|
None
|
SRR5065350
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067240
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073872
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR21277222
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206937
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831758
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26399600
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6480545
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28044807
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773603
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24083737
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10040261
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR261168
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969510
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10306005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6152786
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR29231162
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29053461
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1047969
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21276944
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR21690243
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13439925
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17703716
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21691000
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399410
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9029390
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7911140
|
RR-TB
|
lineage2.2.1
|
vn
|
SRR21277298
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR13355781
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811289
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR15316000
|
Sensitive
|
lineage2.2.1
|
None
|
SRR27449986
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723760
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4810545
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR1172906
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1140790
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8773604
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065343
|
Other
|
lineage2.2.1
|
vn
|
SRR5073670
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR21277695
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29772681
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811565
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR21277181
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969511
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067695
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR2024931
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR18549031
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828636
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR13093874
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3273174
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065307
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR11049615
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5065442
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR7737681
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065511
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR1352352
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR4832057
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR7911115
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
DRR261098
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370473
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2512409
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR21658536
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21658538
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6824365
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4811162
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR5709837
|
MDR-TB
|
lineage2.2.1
|
th
|
SRR12142387
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828201
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26937002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065460
|
Other
|
lineage2.2.1
|
vn
|
SRR15723207
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6280148
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4830458
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR22249688
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4828284
|
Other
|
lineage2.2.1
|
vn
|
SRR26399867
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8699776
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
SRR5067465
|
Other
|
lineage2.2.1
|
vn
|
SRR10040243
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828540
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR19324997
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4832001
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26936997
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21279386
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065238
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR13423589
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR261136
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073591
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR27450510
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21576648
|
RR-TB
|
lineage2.2.1
|
None
|
SRR26399402
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5073526
|
Other
|
lineage2.2.1
|
vn
|
ERR4831861
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR14520007
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723761
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23691347
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096485
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4810713
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4828629
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR21690994
|
Other
|
lineage2.2.1
|
None
|
SRR29051410
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11081885
|
Sensitive
|
lineage2.2.1
|
None
|
SAMN03246485
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4831737
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR7911178
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR4831651
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5074179
|
Other
|
lineage2.2.1
|
vn
|
ERR2510756
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4811599
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR10305766
|
Other
|
lineage2.2.1
|
None
|
SRR25206895
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830223
|
Other
|
lineage2.2.1
|
vn
|
SRR1765872
|
Other
|
lineage2.2.1
|
None
|
SRR20969617
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10305682
|
Sensitive
|
lineage2.2.1
|
None
|
ERR553036
|
Sensitive
|
lineage2.2.1
|
de
|
SRR5065465
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067272
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26399948
|
Other
|
lineage2.2.1
|
None
|
SRR6153065
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR6152686
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR29440578
|
Other
|
lineage2.2.1
|
None
|
SRR30182605
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6797665
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9119219
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067697
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR20969810
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9634253
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972228
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824631
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR19128041
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969626
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR10040345
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21658641
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831607
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR13423562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811549
|
HR-TB
|
lineage2.2.1
|
cn
|
ERR4810966
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29385281
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969871
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9119298
|
Sensitive
|
lineage2.2.1
|
None
|
ERR117722
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
SRR26936937
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316183
|
Other
|
lineage2.2.1
|
None
|
SRR5073603
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR3275538
|
Sensitive
|
lineage2.2.1
|
nl
|
SRR27450447
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067409
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4831856
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR27450451
|
Other
|
lineage2.2.1
|
None
|
SRR26399656
|
Sensitive
|
lineage2.2.1
|
None
|
SRR20969480
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24083744
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29051429
|
Other
|
lineage2.2.1
|
None
|
SRR21732515
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4810523
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR1352350
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR30182645
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399951
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4813312
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2843514
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370352
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073807
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR960961
|
Other
|
lineage2.2.1
|
cn
|
SRR28858706
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510804
|
Other
|
lineage2.2.1
|
None
|
SRR21732366
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29051401
|
Other
|
lineage2.2.1
|
None
|
SRR5709804
|
Sensitive
|
lineage2.2.1
|
th
|
SRR29017497
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1140771
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26937013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828697
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4832048
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR30182434
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1352303
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR1173250
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831646
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831780
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831600
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR9119351
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13439923
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723757
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29051154
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067665
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR20969671
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393390
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26400010
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26400073
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23316617
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096452
|
Sensitive
|
lineage2.2.1
|
None
|
SRR13423554
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21732324
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25207378
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055769
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251137
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25206967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29016908
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399493
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830963
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR6824424
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR6866561
|
Sensitive
|
lineage2.2.1
|
None
|
SAMEA104362260
|
Sensitive
|
lineage2.2.1
|
None
|
ERR1352354
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR1352356
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR25628607
|
Sensitive
|
lineage2.2.1
|
None
|
DRR130100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2512464
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR10305713
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25534150
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723752
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR15316290
|
RR-TB
|
lineage2.2.1
|
None
|
SAMEA4791108
|
Sensitive
|
lineage2.2.1
|
us
|
SRR15369062
|
Other
|
lineage2.2.1
|
None
|
SRR26399981
|
HR-TB
|
lineage2.2.1
|
None
|
SRR2100373
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723765
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR26399530
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067500
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4832069
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5073745
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4828732
|
Other
|
lineage2.2.1
|
vn
|
ERR4831726
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073922
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR22249824
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10040494
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4829207
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4832003
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065277
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR16370593
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065360
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR21732873
|
Other
|
lineage2.2.1
|
None
|
DRR185120
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4832033
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR13423583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5073695
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR25207234
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065385
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR11662273
|
RR-TB
|
lineage2.2.1
|
None
|
ERR502924
|
Other
|
lineage2.2.1
|
None
|
SRR22249749
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4811241
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4812285
|
Sensitive
|
lineage2.2.1;lineage4.1.2.1
|
pe
|
ERR13093959
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26937064
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399632
|
Other
|
lineage2.2.1
|
None
|
ERR7911484
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR30182785
|
Other
|
lineage2.2.1
|
None
|
SRR26936940
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13439913
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399392
|
Other
|
lineage2.2.1
|
None
|
SRR5065426
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR10040323
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6280271
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4828528
|
Sensitive
|
lineage2.2.1
|
None
|
SRR15723036
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305744
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21576668
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824469
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4830310
|
Other
|
lineage2.2.1
|
vn
|
SRR17787483
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11067638
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819046
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25515258
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22250209
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399156
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399485
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21277242
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2704703
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2513667
|
Sensitive
|
lineage2.2.1
|
gb
|
ERR7911320
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR2843513
|
Other
|
lineage1.1.1;lineage2.2.1;lineage4
|
None
|
SRR5073515
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR13246509
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810587
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR7737830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR023451
|
RR-TB
|
lineage2.2.1
|
None
|
ERR7911333
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5067230
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR13423565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3275900
|
Sensitive
|
lineage2.2.1
|
nl
|
SRR26399258
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR5067313
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29441084
|
Other
|
lineage2.2.1
|
None
|
SRR29093692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29230911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26399661
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21658376
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399462
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4811058
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR2513307
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR29051096
|
Sensitive
|
lineage2.2.1
|
None
|
SRR23691321
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067448
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4828659
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4832068
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065216
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4808982
|
Sensitive
|
lineage2.2.1
|
za
|
SRR11662477
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911506
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR13423553
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13423566
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969646
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13288776
|
RR-TB
|
lineage2.2.1
|
None
|
ERR12141641
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28393595
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399217
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28119754
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067582
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5067586
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067684
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5074065
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26399316
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11662397
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15369061
|
Other
|
lineage2.2.1
|
None
|
ERR7737684
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292108
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830239
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR9786444
|
Sensitive
|
lineage4.8
|
None
|
ERR4828286
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5074155
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26112469
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21713551
|
Other
|
lineage2.2.1
|
None
|
SRR18495592
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5074156
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR6397440
|
Other
|
lineage2.2.1
|
ca
|
SRR26936952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7339132
|
HR-TB
|
lineage2.2.1
|
None
|
SRR20969936
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399419
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067613
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073696
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4799924
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5065537
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR21733247
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251741
|
Sensitive
|
lineage2.2.1
|
None
|
SRR19315459
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29440732
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277515
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4810893
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR21277419
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073757
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR26399675
|
Other
|
lineage2.2.1
|
None
|
SRR5073968
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR10040215
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.4.2
|
None
|
ERR4828736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399586
|
Sensitive
|
lineage2.2.1
|
None
|
SRR15723284
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811309
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR3275914
|
Other
|
lineage2.2.1
|
nl
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
ERR4828419
|
Other
|
lineage2.2.1
|
vn
|
SRR22251124
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21576672
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
SRR10828634
|
RR-TB
|
lineage2.2.1
|
None
|
SRR25534226
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370592
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810932
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR22251304
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4810542
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR1034801
|
Sensitive
|
lineage2.2.1
|
pe
|
SRR25206960
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399541
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828729
|
Other
|
lineage1.2.1.2.1;lineage2.2.1
|
vn
|
SRR2024971
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR13423552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18913793
|
Sensitive
|
lineage2.2.1
|
None
|
SRR30182604
|
Other
|
lineage2.2.1
|
None
|
SRR7070434
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723763
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21732345
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7737736
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02599143
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
SRR26399245
|
HR-TB
|
lineage2.2.1
|
None
|
SRR24083622
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830214
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4828718
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5817462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811463
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR15316284
|
RR-TB
|
lineage2.2.1
|
None
|
SRR17787476
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02599144
|
HR-TB
|
lineage2.2.1
|
in
|
ERR9119268
|
Other
|
lineage2.2.1
|
None
|
SRR6280192
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4828687
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR023449
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4828326
|
Other
|
lineage2.2.1
|
vn
|
ERR9119362
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21722050
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1172958
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065364
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR25827778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6797548
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251352
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067258
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4831817
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26112164
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399451
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13246488
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7069860
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831765
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073628
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR1723756
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR20970049
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067388
|
Other
|
lineage2.2.1
|
vn
|
ERR1352351
|
XDR-TB
|
lineage2.2.1
|
cn
|
SRR10040432
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6280146
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR6280172
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR7131122
|
Other
|
lineage2.2.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
SRR22249818
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25207282
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4832010
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR22249771
|
Sensitive
|
lineage2.2.1
|
None
|
SRR14519899
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2446564
|
Sensitive
|
lineage2.2.1
|
nl
|
SRR1175141
|
HR-TB
|
lineage2.2.1
|
None
|
SRR17716888
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4810924
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25515801
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26400104
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12416827
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969983
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28044665
|
Sensitive
|
lineage2.2.1
|
None
|
SAMN02599064
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1723768
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR27069454
|
Other
|
lineage2.2.1
|
None
|
SRR28393559
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351288
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6153274
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR7131099
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28046208
|
Sensitive
|
lineage2.2.1
|
None
|