Rv3862c - c.-78A>C


Drug resistance types
116 Sensitive 5 RR-TB 20 HR-TB 90 MDR-TB 51 Pre-XDR-TB 4 XDR-TB 32 Other
lineage Counts
lineage Count
lineage4.1.1.1 9
lineage4.4.2 5
lineage4.8 65
lineage4.2.2.2 2
lineage2.2.1 68
lineage2.2.2 10
lineage4.1 1
lineage4.1.2.1 8
lineage2.2.1.1 6
lineage2.2.1.1;lineage4.3.3 1
lineage4.3.3 30
lineage4.2.1 3
lineage4.1.4 4
lineage4.4.1.1.1 2
lineage4.1.3 5
lineage4.9 5
lineage4.3.4.2 12
lineage4.3.4.2.1 7
lineage3 8
lineage4.7 3
lineage1.2.2.1 11
lineage4.3.2 3
lineage4.2.2.1 1
lineage4.3.1 2
lineage4.5 6
lineage4.1.1.3 12
lineage4.2.2 4
lineage4.3 2
lineage4.3.4.1 4
lineage3.1.1 1
lineage4 2
lineage3.1.2.1 1
lineage2.2.1;lineage4.1.1.3 1
lineage4.4.1.1 3
lineage4.2.1.1 2
lineage1.1.1;lineage2.2.1 1
lineage4.6 1
lineage3.1.2 2
lineage4.6.2.2 1
lineage4.6.1.1 1
lineage1.2.1.2.1 1
La1.5;lineage4 1
lineage4.4 1
spoligotype Counts
spoligotype Count
None 318
Geographic prevalence
Country level data for this variant is available for 92 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR7069048 Sensitive lineage4.1.1.1 None
SRR25206957 MDR-TB lineage4.4.2 None
SRR18337392 Sensitive lineage4.8 None
ERR4819334 Other lineage4.2.2.2 gb
ERR4797326 MDR-TB lineage2.2.1 in
SRR7069592 Sensitive lineage4.8 None
ERR8976088 Pre-XDR-TB lineage2.2.2 None
ERR228026 HR-TB lineage4.1 ru
ERR11243606 Sensitive lineage4.8 None
ERR4818550 Sensitive lineage4.1.2.1 None
SRR4423144 Pre-XDR-TB lineage4.1.1.1 None
ERR4831862 MDR-TB lineage2.2.1.1 vn
SRR25827730 MDR-TB lineage2.2.1.1;lineage4.3.3 None
SRR6832258 Sensitive lineage4.3.3 None
SRR3086354 MDR-TB lineage4.2.1 None
ERR9119527 MDR-TB lineage4.1.4 None
ERR2515755 Sensitive lineage4.4.1.1.1 za
ERR1465922 Sensitive lineage4.8 ch
SRR998797 MDR-TB lineage4.1.3 None
ERR751837 MDR-TB lineage2.2.1 th
ERR2707186 MDR-TB lineage4.9 cd
ERR6865789 Sensitive lineage4.3.4.2 None
ERR176536 Sensitive lineage4.3.4.2.1 mw
SRR2101162 Sensitive lineage3 None
SRR12420496 RR-TB lineage2.2.1 None
ERR2653002 Sensitive lineage4.8 None
SRR7069830 Sensitive lineage4.1.1.1 None
ERR11080941 MDR-TB lineage4.7 None
SRR1173752 Pre-XDR-TB lineage2.2.2 None
SAMEA2534067 MDR-TB lineage2.2.1 uz
SRR22424844 Sensitive lineage4.8 None
SRR22528531 MDR-TB lineage4.3.3 None
ERR4814012 Sensitive lineage4.3.3 br
ERR9786418 Other lineage4.3.4.2 None
ERR4872121 MDR-TB lineage4.1.4 None
ERR9657186 Other lineage1.2.2.1 None
ERR4800194 Other lineage1.2.2.1 in
ERR2677430 MDR-TB lineage2.2.1 de
SRR1174280 Pre-XDR-TB lineage2.2.2 None
SRR18714763 Sensitive lineage4.8 None
SRR998796 MDR-TB lineage4.1.3 None
ERR2206051 Sensitive lineage4.3.2 None
ERR11082810 MDR-TB lineage4.2.2.1 None
ERR7363060 Sensitive lineage4.3.3 None
ERR4818691 Other lineage4.8 None
ERR4800581 Pre-XDR-TB lineage2.2.1 in
ERR11044680 MDR-TB lineage4.3.3 None
ERR4831131 Sensitive lineage4.1.2.1 de
SRR21689740 Sensitive lineage4.3.1 None
ERR176539 Sensitive lineage4.3.4.2.1 mw
SRR7653022 MDR-TB lineage2.2.1 None
ERR2513059 Sensitive lineage4.1.1.1 gb
SRR15014678 MDR-TB lineage2.2.1.1 None
ERR12549710 Sensitive lineage4.3.3 None
ERR2179822 HR-TB lineage4.5 cn
ERR1034647 MDR-TB lineage4.1.1.3 None
SRR11662570 Pre-XDR-TB lineage2.2.1 None
ERR2516066 Pre-XDR-TB lineage2.2.2 za
ERR3287833 MDR-TB lineage4.3.3 pe
SRR28239730 Sensitive lineage4.8 None
SRR28498616 Sensitive lineage4.3.3 None
SRR28389894 Sensitive lineage4.8 None
SRR28409300 Sensitive lineage4.3.3 None
SRR28393565 MDR-TB lineage4.3.3 None
ERR11775795 Sensitive lineage4.3.4.2.1 None
ERR11775677 Sensitive lineage2.2.1 None
SRR28045021 Pre-XDR-TB lineage4.1.1.3 None
SRR28351437 Pre-XDR-TB lineage3 None
ERR4819206 Other lineage4.8 None
ERR11081020 MDR-TB lineage4.3.3 None
SRR16089548 Other lineage1.2.2.1 None
ERR7363105 Sensitive lineage4.8 None
SRR25207317 MDR-TB lineage4.5 None
ERR4813784 HR-TB lineage4.3.3 br
SRR24827283 Pre-XDR-TB lineage4.2.2 None
SRR22528574 MDR-TB lineage4.3.3 None
SRR22249468 MDR-TB lineage2.2.1 None
ERR3273127 MDR-TB lineage4.3 None
SRR25206909 Pre-XDR-TB lineage2.2.1 None
SRR1165269 Pre-XDR-TB lineage2.2.2 None
ERR4797912 Sensitive lineage4.1.1.3 in
ERR4810766 MDR-TB lineage4.4.2 cn
ERR234101 Sensitive lineage2.2.1 None
ERR2653033 HR-TB lineage4.3.4.1 None
SRR6982465 Sensitive lineage4.3.4.2 None
ERR1465938 Sensitive lineage4.8 dz
ERR4821895 Sensitive lineage4.8 gb
ERR2514855 Sensitive lineage4.1.1.1 gb
ERR4831910 MDR-TB lineage2.2.1.1 None
ERR7737794 MDR-TB lineage3.1.1 None
ERR11798639 MDR-TB lineage4.3.3 None
ERR9786265 Sensitive lineage4.3.4.2 None
SRR21277076 Sensitive lineage4.2.2 None
SRR23861713 RR-TB lineage4.8 None
ERR3148037 Pre-XDR-TB lineage4.3.3 None
ERR4818786 Sensitive lineage4.8 None
SRR11662720 Pre-XDR-TB lineage2.2.1 None
SRR6832134 HR-TB lineage4.3.3 None
ERR11049421 Sensitive lineage4.3.4.2 None
SRR21276933 Pre-XDR-TB lineage2.2.1 None
SRR16115071 Pre-XDR-TB lineage4.2.2 None
ERR4821666 Other lineage4.8 gb
SRR998799 MDR-TB lineage4.1.3 None
SRR18548992 Sensitive lineage4 None
ERR4800671 HR-TB lineage3 None
SRR25207298 Pre-XDR-TB lineage2.2.1 None
SRR11662566 MDR-TB lineage2.2.1 None
SRR7070398 Other lineage1.2.2.1 None
ERR4815606 Sensitive lineage4.8 gb
ERR2677461 Pre-XDR-TB lineage4.3.3 de
ERR551745_ERR551743_ERR551744 MDR-TB lineage2.2.1 None
ERR2510476 RR-TB lineage3 pk
SRR21689620 Sensitive lineage4.7 None
ERR4813859 MDR-TB lineage4.3.4.1 br
SRR3085262 MDR-TB lineage4.2.1 None
SRR5709921 MDR-TB lineage2.2.1 th
SRR11567806 Pre-XDR-TB lineage2.2.1 None
ERR2513311 Sensitive lineage4.1.1.1 gb
SRR17856689 Other lineage1.2.2.1 None
ERR2516607 MDR-TB lineage4.1.2.1 nl
ERR11049272 Sensitive lineage4.8 None
SRR14801637 HR-TB lineage4.2.1 None
ERR4799128 Pre-XDR-TB lineage3.1.2.1 in
ERR979065 Sensitive lineage4.9 None
ERR2515725 Pre-XDR-TB lineage2.2.2 za
SRR25207063 MDR-TB lineage4.4.2 None
SRR6045455 Sensitive lineage4.1.1.1 gb
ERR4813129 Pre-XDR-TB lineage2.2.1 None
SRR22137406 Pre-XDR-TB lineage2.2.1 None
ERR4815040 Other lineage4.2.2.2 None
ERR2653060 Pre-XDR-TB lineage4.1.2.1 None
ERR4872092 MDR-TB lineage4.1.4 None
SRR22251653 HR-TB lineage4.1.1.3 None
ERR551610_ERR551611 MDR-TB lineage2.2.1 None
ERR8975980 MDR-TB lineage2.2.2 None
ERR4821139 Other lineage4.8 gb
SRR10040345 MDR-TB lineage2.2.1 None
SRR15014766 MDR-TB lineage4.1.2.1 None
ERR4814079 Sensitive lineage4.3.4.1 None
SRR6824337 Pre-XDR-TB lineage4.5 cn
ERR6865917 Sensitive lineage4.3.4.2 None
SRR25827463 Pre-XDR-TB lineage2.2.1;lineage4.1.1.3 None
SRR25515573 MDR-TB lineage2.2.1 None
SRR5153604 MDR-TB lineage4.2.2 None
ERR12117954 MDR-TB lineage4.3.3 None
SRR1180999 Sensitive lineage4.8 None
ERR551610 MDR-TB lineage2.2.1 None
ERR4819770 Other lineage4.8 gb
ERR4819295 Sensitive lineage4.8 gb
ERR2510587 Pre-XDR-TB lineage3 pk
SRR6824543 MDR-TB lineage2.2.1 cn
ERR11068989 Sensitive lineage4.8 None
SRR10380236 Sensitive lineage4.3.3 None
ERR4820638 Sensitive lineage4.8 gb
ERR10680071 MDR-TB lineage4.4.1.1 None
SRR6484913 Pre-XDR-TB lineage2.2.1 None
SRR22873595 MDR-TB lineage2.2.1 None
ERR4832001 HR-TB lineage2.2.1 None
ERR4820781 Sensitive lineage4.8 None
ERR4809357 Pre-XDR-TB lineage2.2.2 za
ERR9993146 XDR-TB lineage4.1.1.3 None
SRR22250057 Sensitive lineage4.5 None
SRR13591449 Sensitive lineage4.8 None
SRR12420592 MDR-TB lineage2.2.1 None
SRR8651577 Pre-XDR-TB lineage2.2.1 cn
SRR11662577 MDR-TB lineage2.2.1 None
SRR10380058 Other lineage4.2.1.1 None
ERR4813756 HR-TB lineage4.3.3 br
ERR11049846 Other lineage1.2.2.1 None
ERR12328166 HR-TB lineage1.1.1;lineage2.2.1 None
SRR671865 Pre-XDR-TB lineage2.2.1 cn
ERR4822611 Other lineage4.4.1.1 de
SRR28239520 HR-TB lineage4.8 None
SRR28705414 Sensitive lineage4.8 None
SRR27069386 Pre-XDR-TB lineage2.2.1 None
SRR28045691 XDR-TB lineage4.1.1.3 None
SRR28393792 MDR-TB lineage4.1.1.3 None
SRR21662003 Sensitive lineage4.8 None
ERR4798038 Other lineage4.6 in
SRR21277548 Sensitive lineage2.2.1 None
ERR2510591 MDR-TB lineage3.1.2 pk
SRR20969977 Pre-XDR-TB lineage2.2.2 None
SAMEA2534162 MDR-TB lineage2.2.1 uz
SRR12420584 RR-TB lineage2.2.1 None
SRR21277749 Sensitive lineage2.2.1 None
ERR4818482 Other lineage4.8 gb
ERR550889 Sensitive lineage4.9 None
ERR4819526 Sensitive lineage4.8 gb
SRR28239476 Sensitive lineage4.8 None
SRR12420329 MDR-TB lineage2.2.1 None
ERR11082041 Sensitive lineage4.8 None
SRR25340946 Other lineage1.2.2.1 None
SRR24799292 Other lineage4.3.4.2 None
SRR25207309 Pre-XDR-TB lineage2.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4822326 MDR-TB lineage2.2.1 de
ERR4828151 Other lineage2.2.1 vn
SRR10040330 MDR-TB lineage2.2.1 None
SRR25827725 HR-TB lineage4.1.1.3 None
ERR4024557 Sensitive lineage4.3.4.2 None
SRR20969731 Other lineage2.2.1 None
SRR10869090 Sensitive lineage2.2.1.1 None
SRR7069195 Sensitive lineage4.8 None
ERR4423622 Pre-XDR-TB lineage4.9 None
SRR7069087 Sensitive lineage4.8 None
ERR4407478 Other lineage4.6.2.2 None
ERR4797962 XDR-TB lineage4.1.1.3 in
SRR6397748 MDR-TB lineage2.2.1 ca
ERR11083060 MDR-TB lineage4.3.2 None
ERR11068983 Sensitive lineage4.8 None
SRR21277736 Sensitive lineage2.2.1 None
ERR4810724 MDR-TB lineage4.4.2 cn
SRR3082099 MDR-TB lineage4.8 None
SRR21239954 Sensitive lineage4.3.3 None
SAMN02231173 MDR-TB lineage4.1.3 None
ERR4798598 Pre-XDR-TB lineage3.1.2 in
ERR4810763 MDR-TB lineage4.4.2 cn
ERR3132256 RR-TB lineage4.6.1.1 None
ERR176614 Sensitive lineage4.3.4.2.1 mw
SRR6981943 Sensitive lineage4.4.1.1.1 None
SRR7070147 Sensitive lineage4.8 None
SRR27107258 Pre-XDR-TB lineage4.3 None
SRR18337390 Sensitive lineage4.8 None
ERR9119498 MDR-TB lineage4.1.4 None
SRR11567805 Pre-XDR-TB lineage2.2.1 None
ERR6336753 Sensitive lineage1.2.1.2.1 None
SRR21732440 Sensitive lineage3 None
SRR7070065 Other lineage4.1.1.1 None
SRR1180947 Sensitive lineage4.8 None
SRR14164515 Sensitive lineage4.3.3 None
ERR11044295 Sensitive lineage4.8 None
ERR4816202 Sensitive lineage4.8 gb
ERR4815652 Sensitive lineage4.8 gb
ERR4820301 Sensitive lineage4.8 None
ERR4815958 Sensitive lineage4.8 gb
ERR718273 MDR-TB lineage2.2.1 th
ERR5918046 XDR-TB lineage4.1.1.3 za
SRR6397399 MDR-TB lineage2.2.1 ca
SRR8380953 Other lineage1.2.2.1 in
ERR5864802 Pre-XDR-TB lineage2.2.1 None
DRR184884 MDR-TB lineage2.2.1 vn
SRR20970020 HR-TB lineage2.2.1 None
ERR4817297 Other lineage4.8 None
ERR4821602 Other lineage4.8 None
ERR4817491 Sensitive lineage4.8 None
ERR4814485 Sensitive lineage4.8 None
SRR6797769 Sensitive lineage4.3.4.2 None
SRR5894882 MDR-TB lineage2.2.1 None
ERR176512 Sensitive lineage4.3.4.2.1 mw
ERR11044114 Sensitive lineage4.8 None
ERR4553683 Pre-XDR-TB lineage4.1.1.1 None
SRR11662589 MDR-TB lineage2.2.1 None
ERR4815732 Sensitive lineage4.8 gb
SRR11662161 MDR-TB lineage2.2.1 None
SAMN02403633 Pre-XDR-TB lineage2.2.2 za
ERR8774236 Pre-XDR-TB lineage4.9 None
ERR11044507 Pre-XDR-TB lineage4.1.1.3 None
ERR11466178 Sensitive lineage4.4.1.1 None
SRR26056428 HR-TB lineage1.2.2.1 None
ERR4813942 MDR-TB lineage4.3.4.1 br
SRR21722119 Sensitive lineage2.2.1.1 None
ERR4819194 Sensitive lineage4.8 gb
ERR6866435 Sensitive lineage4.1.2.1 None
ERR7902766 Other lineage1.2.2.1 None
ERR176822 Sensitive lineage4.3.4.2.1 mw
ERR4025094 Sensitive lineage4.3.4.2 None
SRR14781956 Sensitive lineage4.3.3 None
SRR11662159 MDR-TB lineage2.2.1 None
SRR21587550 MDR-TB lineage4.3.4.2 None
SRR14781839 Sensitive lineage4.3.3 None
SRR14782090 HR-TB lineage4.3.3 None
ERR176571 Sensitive lineage4.3.4.2.1 mw
SRR16087954 Sensitive lineage4.3.3 None
ERR4817524 Sensitive lineage4.8 gb
SRR28646099 MDR-TB lineage4.1.2.1 None
SRR28393378 MDR-TB lineage4 None
SRR28239593 Sensitive lineage4.8 None
ERR4815959 Sensitive lineage4.8 gb
ERR4815677 Other lineage4.8 gb
SRR11662695 MDR-TB lineage2.2.1 None
ERR4819821 Other lineage4.8 None
ERR2516459 MDR-TB lineage2.2.1 nl
ERR3335741 Pre-XDR-TB lineage3 pk
SRR24256115 MDR-TB lineage4.3.3 None
SRR15465763 Pre-XDR-TB lineage2.2.1 None
SRR22528520 MDR-TB lineage4.3.3 None
ERR1193732 Other lineage4.3.4.2 np
ERR4831883 MDR-TB lineage2.2.1.1 vn
SRR6832376 HR-TB La1.5;lineage4 None
ERR4820520 Sensitive lineage4.8 gb
ERR11068108 Other lineage1.2.2.1 None
SRR21277131 Sensitive lineage2.2.1 None
SRR5341306 Pre-XDR-TB lineage4.4 None
ERR6866213 Sensitive lineage4.8 None
SRR18337391 Sensitive lineage4.8 None
SRR7517764 MDR-TB lineage4.3.3 None
DRR130106 Pre-XDR-TB lineage4.5 None
SRR14802205 Sensitive lineage4.2.1.1 None
ERR11243480 Sensitive lineage4.8 None
ERR4822369 Pre-XDR-TB lineage4.5 None
SRR22528535 MDR-TB lineage4.3.3 None
ERR551611 MDR-TB lineage2.2.1 None
ERR3014593 Pre-XDR-TB lineage4.3.1 tn
ERR4821764 Sensitive lineage4.8 gb
ERR776466 Sensitive lineage4.3.2 None
ERR4832010 HR-TB lineage2.2.1 vn
SRR22137417 Pre-XDR-TB lineage2.2.1 None
ERR4832057 HR-TB lineage2.2.1 vn
ERR4827786 MDR-TB lineage4.7 None
ERR4799873 Pre-XDR-TB lineage2.2.1 in
ERR4813987 Sensitive lineage4.1.2.1 br
ERR4815618 Sensitive lineage4.8 None
ERR4814301 Sensitive lineage4.8 gb
SRR25827575 MDR-TB lineage4.1.1.3 None
ERR330724 Sensitive lineage3 None
SRR11662673 MDR-TB lineage2.2.1 None
SRR11662383 MDR-TB lineage2.2.1 None
SRR998798 MDR-TB lineage4.1.3 None