Rv3862c - c.-78A>C
Drug resistance types
114 Sensitive
4 RR-TB
23 HR-TB
78 MDR-TB
47 Pre-XDR-TB
2 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 58 |
| lineage4.8 | 62 |
| lineage4.9 | 5 |
| lineage4.4 | 1 |
| lineage3 | 7 |
| lineage4.3.4.1 | 3 |
| lineage4.1.2.1 | 8 |
| lineage4.3.3 | 30 |
| lineage4.7 | 2 |
| lineage4.5 | 6 |
| lineage4.4.1.1 | 3 |
| lineage4.4.2 | 5 |
| lineage4.1.1.3 | 9 |
| lineage3.1.2.1 | 1 |
| lineage3.1.2 | 2 |
| lineage4.6 | 1 |
| lineage1.2.2.1 | 9 |
| lineage4.1.4 | 4 |
| lineage4.3.4.2 | 12 |
| lineage4 | 6 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1 | 2 |
| lineage4.1.3 | 4 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1.1 | 7 |
| lineage4.2.2.2 | 2 |
| lineage4.1.1.1 | 4 |
| lineage4.6.2.2 | 2 |
| lineage4.3 | 2 |
| lineage2.2.2 | 8 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.2 | 3 |
| lineage3.1.1 | 1 |
| lineage4.2.1.1 | 2 |
| lineage2.2 | 1 |
| lineage4.2.1 | 3 |
| lineage4.2.2 | 4 |
| lineage4.3.3;lineage2.2.1.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage2.2.1;lineage1.1.1 | 1 |
| lineage4.1.1.3;lineage2.2.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 295 |
Geographic prevalence
Country level data for this variant is available for 100 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6397399 | MDR-TB | lineage2.2.1 | ca | SRR6397748 | MDR-TB | lineage2.2.1 | ca | ERR4820781 | Sensitive | lineage4.8 | None | ERR4819821 | Other | lineage4.8 | None | ERR1465922 | Sensitive | lineage4.8 | ch | ERR2707186 | MDR-TB | lineage4.9 | cd | SRR5341306 | Pre-XDR-TB | lineage4.4 | None | SRR2101162 | Sensitive | lineage3 | None | SAMEA2534067 | MDR-TB | lineage2.2.1 | uz | ERR2653002 | Sensitive | lineage4.8 | None | ERR1465938 | Sensitive | lineage4.8 | dz | ERR2653033 | HR-TB | lineage4.3.4.1 | None | ERR2653060 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2677461 | Pre-XDR-TB | lineage4.3.3 | de | ERR4827786 | MDR-TB | lineage4.7 | None | ERR2677430 | MDR-TB | lineage2.2.1 | de | ERR4821602 | Other | lineage4.8 | None | SRR5894882 | MDR-TB | lineage2.2.1 | None | ERR2179822 | HR-TB | lineage4.5 | cn | ERR4822611 | Other | lineage4.4.1.1 | de | ERR4810766 | MDR-TB | lineage4.4.2 | cn | ERR2516459 | MDR-TB | lineage2.2.1 | nl | ERR4797724 | Sensitive | lineage4.3.3 | in | ERR4797962 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4797912 | Sensitive | lineage4.1.1.3 | in | ERR4831131 | Sensitive | lineage4.1.2.1 | de | ERR4822369 | Pre-XDR-TB | lineage4.5 | None | ERR2516607 | MDR-TB | lineage4.1.2.1 | nl | ERR3335741 | Pre-XDR-TB | lineage3 | pk | ERR4799873 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799128 | Pre-XDR-TB | lineage3.1.2.1 | in | SRR8651577 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4798598 | Pre-XDR-TB | lineage3.1.2 | in | ERR4810763 | MDR-TB | lineage4.4.2 | cn | SRR6484913 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797326 | MDR-TB | lineage2.2.1 | in | ERR4810724 | MDR-TB | lineage4.4.2 | cn | SRR6257000 | Sensitive | lineage4.3.3 | None | ERR4822326 | MDR-TB | lineage2.2.1 | de | ERR4798038 | Sensitive | lineage4.6 | in | ERR4800194 | Other | lineage1.2.2.1 | in | ERR3148037 | Pre-XDR-TB | lineage4.3.3 | None | ERR4814301 | Sensitive | lineage4.8 | gb | ERR4816202 | Sensitive | lineage4.8 | gb | ERR4800581 | Pre-XDR-TB | lineage2.2.1 | in | ERR4872092 | MDR-TB | lineage4.1.4 | None | ERR4832001 | HR-TB | lineage2.2.1 | None | SRR6982465 | Sensitive | lineage4.3.4.2 | None | SRR6832134 | HR-TB | lineage4.3.3 | None | SRR6832258 | Sensitive | lineage4.3.3 | None | SRR6832376 | HR-TB | lineage4 | None | ERR4872121 | MDR-TB | lineage4.1.4 | None | SRR6981943 | Sensitive | lineage4.4.1.1.1 | None | SRR6797769 | Sensitive | lineage4.3.4.2 | None | ERR3287833 | MDR-TB | lineage4.3.3 | pe | ERR4817524 | Sensitive | lineage4.8 | gb | ERR4815606 | Sensitive | lineage4.8 | gb | ERR4815652 | Sensitive | lineage4.8 | gb | ERR2510587 | Pre-XDR-TB | lineage3 | pk | ERR4815677 | Other | lineage4.8 | gb | ERR4815732 | Sensitive | lineage4.8 | gb | ERR2510591 | MDR-TB | lineage3.1.2 | pk | ERR4815958 | Sensitive | lineage4.8 | gb | ERR4815959 | Sensitive | lineage4.8 | gb | SRR998799 | MDR-TB | lineage4.1 | None | ERR2510476 | RR-TB | lineage3 | pk | ERR4818066 | Sensitive | lineage4.8 | gb | SRR998797 | MDR-TB | lineage4.1.3 | None | SRR998796 | MDR-TB | lineage4.1.3 | None | ERR3132256 | RR-TB | lineage4.6.1.1 | None | ERR4831910 | MDR-TB | lineage2.2.1.1 | None | SRR998798 | MDR-TB | lineage4.1.3 | None | ERR4819770 | Other | lineage4.8 | gb | DRR130106 | Pre-XDR-TB | lineage4.5 | None | SRR7653022 | MDR-TB | lineage2.2.1 | None | SRR998688 | HR-TB | lineage4.1.3 | None | ERR4819194 | Sensitive | lineage4.8 | gb | ERR4819526 | Sensitive | lineage4.8 | gb | ERR4818482 | Other | lineage4.8 | gb | ERR4819295 | Sensitive | lineage4.8 | gb | ERR4819334 | Other | lineage4.2.2.2 | gb | ERR4819431 | Sensitive | lineage4.8 | gb | ERR11044295 | Sensitive | lineage4.8 | None | ERR10680071 | MDR-TB | lineage4.4.1.1 | None | ERR11044114 | Sensitive | lineage4.8 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR12117954 | MDR-TB | lineage4.3.3 | None | ERR11466178 | Sensitive | lineage4.4.1.1 | None | ERR4820520 | Sensitive | lineage4.8 | gb | ERR4821764 | Sensitive | lineage4.8 | gb | ERR11044507 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11044680 | MDR-TB | lineage4.3.3 | None | ERR4820638 | Sensitive | lineage4.8 | gb | ERR4821666 | Other | lineage4.8 | gb | ERR11798639 | MDR-TB | lineage4.3.3 | None | ERR2513059 | Sensitive | lineage4.1.1.1 | gb | ERR4407478 | Sensitive | lineage4.6.2.2 | None | ERR4820943 | Sensitive | lineage4.8 | gb | ERR4821895 | Sensitive | lineage4.8 | gb | ERR3273127 | MDR-TB | lineage4.3 | None | ERR4024557 | Sensitive | lineage4.3.4.2 | None | ERR4025094 | Sensitive | lineage4.3.4.2 | None | ERR4821139 | Other | lineage4.8 | gb | ERR330724 | Sensitive | lineage3 | None | ERR11049421 | Sensitive | lineage4.3.4.2 | None | ERR4423622 | Pre-XDR-TB | lineage4.9 | None | ERR2513311 | Sensitive | lineage4.1.1.1 | gb | ERR4553683 | Pre-XDR-TB | lineage4 | None | ERR2515755 | Sensitive | lineage4.4.1.1.1 | za | ERR2514855 | Sensitive | lineage4.1.1.1 | gb | ERR228026 | HR-TB | lineage4.1 | ru | ERR4831883 | MDR-TB | lineage2.2.1.1 | vn | ERR4832010 | HR-TB | lineage2.2.1 | vn | ERR4831862 | MDR-TB | lineage2.2.1.1 | vn | ERR4832057 | HR-TB | lineage2.2.1 | vn | ERR4828151 | Other | lineage2.2.1 | vn | ERR2515725 | Pre-XDR-TB | lineage2.2.2 | za | ERR2516066 | Pre-XDR-TB | lineage2.2.2 | za | ERR4809357 | Pre-XDR-TB | lineage2.2.2 | za | ERR5918046 | XDR-TB | lineage4.1.1.3 | za | ERR4800671 | HR-TB | lineage3 | None | ERR8975980 | MDR-TB | lineage2.2.2 | None | ERR4813859 | MDR-TB | lineage4.3.4.1 | br | ERR4813942 | MDR-TB | lineage4.3.4.1 | br | ERR8976088 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813987 | Sensitive | lineage4.1.2.1 | br | ERR4814012 | Sensitive | lineage4.3.3 | br | ERR4813756 | HR-TB | lineage4.3.3 | br | ERR4813784 | HR-TB | lineage4.3.3 | br | ERR11049846 | Other | lineage1.2.2.1 | None | ERR5864802 | Pre-XDR-TB | lineage2.2.1 | None | SRR16087954 | Sensitive | lineage4.3.3 | None | ERR6865789 | Sensitive | lineage4.3.4.2 | None | ERR6336753 | RR-TB | lineage1.2.1.2.1 | None | ERR6866213 | Sensitive | lineage4.8 | None | ERR6865917 | Sensitive | lineage4.3.4.2 | None | ERR6866435 | Sensitive | lineage4.1.2.1 | None | SRR21732440 | Sensitive | lineage3 | None | ERR6866999 | Sensitive | lineage4.1.2.1 | None | SRR22137417 | Pre-XDR-TB | lineage2.2.1 | None | ERR7902766 | Other | lineage1.2.2.1 | None | SRR11662673 | MDR-TB | lineage2.2.1 | None | SRR24256115 | MDR-TB | lineage4.3.3 | None | ERR776466 | Sensitive | lineage4.3.2 | None | SRR27107258 | Pre-XDR-TB | lineage4.3 | None | ERR7737794 | MDR-TB | lineage3.1.1 | None | SRR22873595 | MDR-TB | lineage2.2.1 | None | SRR11662566 | MDR-TB | lineage2.2.1 | None | SRR11662577 | MDR-TB | lineage2.2.1 | None | SRR22137406 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662695 | MDR-TB | lineage2.2.1 | None | SRR22249468 | MDR-TB | lineage2.2.1 | None | SRR22250057 | Sensitive | lineage4.5 | None | ERR8774236 | Pre-XDR-TB | lineage4.9 | None | ERR9119498 | MDR-TB | lineage4.1.4 | None | SRR22251653 | HR-TB | lineage4.1.1.3 | None | ERR9786265 | Sensitive | lineage4.3.4.2 | None | ERR9119527 | MDR-TB | lineage4.1.4 | None | ERR9657186 | Other | lineage1.2.2.1 | None | SRR10380236 | Sensitive | lineage4.3.3 | None | ERR9786418 | Sensitive | lineage4.3.4.2 | None | SRR10380058 | Other | lineage4.2.1.1 | None | ERR979065 | Sensitive | lineage4.9 | None | ERR9993146 | XDR-TB | lineage4.1.1.3 | None | SRR10869090 | Sensitive | lineage2.2.1.1 | None | SRR10851702 | Sensitive | lineage4.3.3 | None | SRR10851699 | Sensitive | lineage4.3.3 | None | SRR11567805 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165269 | Pre-XDR-TB | lineage2.2 | None | SRR11567806 | Pre-XDR-TB | lineage2.2.1 | None | SRR1174280 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173752 | Pre-XDR-TB | lineage2.2.2 | None | SRR11662161 | MDR-TB | lineage2.2.1 | None | SRR13591449 | Sensitive | lineage4.8 | None | SRR11662159 | MDR-TB | lineage2.2.1 | None | SRR1180947 | Sensitive | lineage4.8 | None | SRR1180999 | Sensitive | lineage4.8 | None | SRR14781956 | Sensitive | lineage4.3.3 | None | SRR14781839 | Sensitive | lineage4.3.3 | None | SRR14164515 | Sensitive | lineage4.3.3 | None | SRR14782090 | HR-TB | lineage4.3.3 | None | SRR14801637 | HR-TB | lineage4.2.1 | None | SRR14802205 | Sensitive | lineage4.2.1.1 | None | SRR15014678 | MDR-TB | lineage2.2.1.1 | None | SRR16089548 | Other | lineage1.2.2.1 | None | SRR15014766 | MDR-TB | lineage4.1.2.1 | None | SRR15465763 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662720 | Pre-XDR-TB | lineage2.2.1 | None | SRR18548992 | Sensitive | lineage4 | None | SRR11662570 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662383 | MDR-TB | lineage2.2.1 | None | SRR17856689 | Other | lineage1.2.2.1 | None | SRR18337391 | Sensitive | lineage4.8 | None | SRR18337392 | Sensitive | lineage4.8 | None | SRR18337390 | Sensitive | lineage4.8 | None | SRR11662589 | MDR-TB | lineage2.2.1 | None | SRR18714763 | Sensitive | lineage4.8 | None | SRR25206909 | Pre-XDR-TB | lineage2.2.1 | None | SRR18911561 | Pre-XDR-TB | lineage4.2.2 | None | SRR24827283 | Pre-XDR-TB | lineage4.2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970020 | HR-TB | lineage2.2.1 | None | SRR25827725 | HR-TB | lineage4.1.1.3 | None | SRR25827730 | MDR-TB | lineage4.3.3;lineage2.2.1.1 | None | SRR21277131 | Sensitive | lineage2.2.1 | None | SRR25206957 | MDR-TB | lineage4.4.2 | None | SRR25207063 | MDR-TB | lineage4.4.2 | None | SRR25207309 | Pre-XDR-TB | lineage2.2.1 | None | SRR21239907 | Sensitive | lineage4.3.3 | None | SRR21239954 | Sensitive | lineage4.3.3 | None | SRR21276933 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277076 | Sensitive | lineage4.2.2 | None | SRR21277548 | Sensitive | lineage2.2.1 | None | SRR21277736 | Sensitive | lineage2.2.1 | None | SRR21662003 | Sensitive | lineage4.8 | None | SRR21277749 | Sensitive | lineage2.2.1 | None | SRR22528520 | MDR-TB | lineage4.3.3 | None | SRR22424844 | Sensitive | lineage4.8 | None | SRR21722119 | Sensitive | lineage2.2.1.1 | None | ERR11080941 | MDR-TB | lineage4.7 | None | SRR22528535 | MDR-TB | lineage4.3.3 | None | SRR22528574 | MDR-TB | lineage4.3.3 | None | ERR11068983 | Sensitive | lineage4.8 | None | SRR22528531 | MDR-TB | lineage4.3.3 | None | ERR11068108 | Other | lineage1.2.2.1 | None | ERR11068989 | Sensitive | lineage4.8 | None | ERR11082041 | Sensitive | lineage4.8 | None | ERR11243606 | Sensitive | lineage4.8 | None | ERR11082810 | MDR-TB | lineage4.2.2.1 | None | SRR23861713 | RR-TB | lineage4.8 | None | ERR11243480 | Sensitive | lineage4.8 | None | ERR11083060 | MDR-TB | lineage4.3.2 | None | ERR7363105 | Sensitive | lineage4.8 | None | ERR9806796 | HR-TB | lineage4 | None | ERR7363060 | Sensitive | lineage4.3.3 | None | ERR10610321 | HR-TB | lineage4 | None | SRR24799292 | Sensitive | lineage4.3.4.2 | None | ERR12549710 | Sensitive | lineage4.3.3 | None | SRR25340946 | Other | lineage1.2.2.1 | None | SRR25515573 | MDR-TB | lineage2.2.1 | None | SRR25207317 | MDR-TB | lineage4.5 | None | SRR25207298 | Pre-XDR-TB | lineage2.2.1 | None | SRR21587550 | MDR-TB | lineage4.3.4.2 | None | ERR12328166 | HR-TB | lineage2.2.1;lineage1.1.1 | None | SRR3082099 | MDR-TB | lineage4.8 | None | SRR25827575 | MDR-TB | lineage4.1.1.3 | None | SRR25827463 | Pre-XDR-TB | lineage4.1.1.3;lineage2.2.1 | None | SRR28239476 | Sensitive | lineage4.8 | None | SRR28239730 | Sensitive | lineage4.8 | None | SRR1723601 | MDR-TB | lineage2.2.1 | cn | ERR4815618 | Other | lineage4.8 | None | SRR671865 | Pre-XDR-TB | lineage2.2.1 | cn | SRR3085262 | MDR-TB | lineage4.2.1 | None | SRR3086354 | MDR-TB | lineage4.2.1 | None | SRR6045455 | Sensitive | lineage4.1.1.1 | gb | ERR4814079 | Sensitive | lineage4.3.4 | None | ERR4815296 | Sensitive | lineage4 | None | SRR6046639 | Sensitive | lineage4.8 | gb | ERR1679633 | MDR-TB | lineage4.6.2.2 | None | ERR4814485 | Other | lineage4.8 | None | ERR4812857 | HR-TB | lineage4.9 | None | SRR8380953 | Other | lineage1.2.2.1 | in | SRR5709921 | MDR-TB | lineage2.2.1 | th | SRR6824337 | Pre-XDR-TB | lineage4.5 | cn | ERR176539 | Sensitive | lineage4.3.4.2.1 | mw | ERR4815040 | Other | lineage4.2.2.2 | None | ERR176512 | Sensitive | lineage4.3.4.2.1 | mw | ERR4813129 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824543 | MDR-TB | lineage2.2.1 | cn | ERR3014593 | Pre-XDR-TB | lineage4.3.1 | tn | ERR176536 | Sensitive | lineage4.3.4.2.1 | mw | ERR176614 | Sensitive | lineage4.3.4.2.1 | mw | ERR176571 | Sensitive | lineage4.3.4.2.1 | mw | DRR184884 | MDR-TB | lineage2.2.1 | vn | ERR176822 | Sensitive | lineage4.3.4.2.1 | mw | ERR4817491 | Sensitive | lineage4.8 | None | ERR4817297 | Other | lineage4.8 | None | ERR751837 | MDR-TB | lineage2.2.1 | th | ERR234101 | Sensitive | lineage2.2.1 | None | ERR4818691 | Other | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5065361 | HR-TB | lineage2.2.1 | vn | ERR4818786 | Sensitive | lineage4.8 | None | SRR5067504 | MDR-TB | lineage2.2.1.1 | vn | ERR718273 | MDR-TB | lineage2.2.1 | th | SRR5153604 | MDR-TB | lineage4.2.2 | None | SAMEA2534162 | MDR-TB | lineage2.2.1 | uz | ERR11049272 | Sensitive | lineage4.8 | None | ERR4818550 | Sensitive | lineage4.1.2.1 | None | SAMN02403633 | Pre-XDR-TB | lineage2.2.2 | za | ERR1193732 | Sensitive | lineage4.3.4.2 | np | ERR4819206 | Other | lineage4.8 | None | ERR2206051 | Sensitive | lineage4.3.2 | None | ERR4819548 | Sensitive | lineage4.8 | None | ERR4820301 | Sensitive | lineage4.8 | None |
|---|
