Rv3862c - c.-78A>C


Drug resistance types
127 Sensitive 5 RR-TB 24 HR-TB 102 MDR-TB 57 Pre-XDR-TB 6 XDR-TB 34 Other
lineage Counts
lineage Count
lineage2.2.1 78
lineage4.2.2.2 2
lineage3 8
lineage4.8 67
lineage4.3.3 35
lineage4.1.2.1 9
lineage1.2.2.1 14
lineage4.3.4.2 13
lineage4.2.2 4
lineage4.9 5
lineage4.1.3 5
lineage4.1.1.3 17
lineage4.5 7
lineage4.3.4.1 4
lineage2.2.1.1 9
lineage4.7 4
lineage4.3.4.2.1 7
lineage4.2.1.1 2
lineage2.2.2 13
lineage4.1.4 4
lineage4.1 2
lineage4.1.1.1 10
lineage3.1.1 1
lineage4.3.2 3
lineage4.4.2 5
lineage4.6.1.1 1
lineage2.2.1;lineage4.1.1.3 1
lineage4.2.1 3
lineage4.2.2.1 1
lineage4 2
lineage4.4 1
lineage4.3.1 2
lineage4.4.1.1.1 2
lineage3.1.2 2
lineage4.3 2
lineage3.1.2.1 1
lineage1.2.1.2.1 1
lineage4.4.1.1 3
La1.5;lineage4 1
lineage4.6 1
lineage4.6.2.2 1
lineage2.2.1.1;lineage4.3.3 1
lineage1.1.1;lineage2.2.1 1
spoligotype Counts
spoligotype Count
None 355
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR22137406 Pre-XDR-TB lineage2.2.1 None
SRR6397399 MDR-TB lineage2.2.1 ca
ERR4815040 Other lineage4.2.2.2 None
DRR184884 MDR-TB lineage2.2.1 vn
ERR2510476 RR-TB lineage3 pk
SRR22424844 Sensitive lineage4.8 None
SRR27069386 Pre-XDR-TB lineage2.2.1 None
ERR2677461 Pre-XDR-TB lineage4.3.3 de
ERR4821602 Other lineage4.8 None
ERR4817491 Sensitive lineage4.8 None
SRR29772719 MDR-TB lineage4.1.2.1 None
SRR29231500 Other lineage1.2.2.1 None
SRR28239520 HR-TB lineage4.8 None
ERR6865917 Sensitive lineage4.3.4.2 None
SRR5153604 MDR-TB lineage4.2.2 None
ERR2707186 MDR-TB lineage4.9 cd
SRR998796 MDR-TB lineage4.1.3 None
SRR12420329 MDR-TB lineage2.2.1 None
SRR11662161 MDR-TB lineage2.2.1 None
SRR21277548 Sensitive lineage2.2.1 None
ERR11044507 Pre-XDR-TB lineage4.1.1.3 None
ERR13254276 Pre-XDR-TB lineage4.5 None
ERR4818691 Other lineage4.8 None
ERR4813942 MDR-TB lineage4.3.4.1 br
SRR21722119 Sensitive lineage2.2.1.1 None
ERR4827786 MDR-TB lineage4.7 None
ERR4831131 Sensitive lineage4.1.2.1 de
ERR176539 Sensitive lineage4.3.4.2.1 mw
SRR14781956 Sensitive lineage4.3.3 None
SRR11662159 MDR-TB lineage2.2.1 None
ERR11080941 MDR-TB lineage4.7 None
ERR1034647 MDR-TB lineage4.1.1.3 None
SRR12420592 MDR-TB lineage2.2.1 None
ERR13291664 Sensitive lineage2.2.1.1 None
SRR10380058 Other lineage4.2.1.1 None
ERR4821895 Sensitive lineage4.8 gb
ERR11775795 Sensitive lineage4.3.4.2.1 None
SRR6397748 MDR-TB lineage2.2.1 ca
SRR28351437 Pre-XDR-TB lineage3 None
SRR8651577 Pre-XDR-TB lineage2.2.1 cn
ERR13286210 MDR-TB lineage2.2.2 None
SRR29538947 Sensitive lineage2.2.1 None
ERR4831883 MDR-TB lineage2.2.1.1 vn
ERR4872092 MDR-TB lineage4.1.4 None
ERR4820301 Sensitive lineage4.8 None
ERR4820638 Sensitive lineage4.8 gb
ERR7363060 Sensitive lineage4.3.3 None
SRR28393565 MDR-TB lineage4.3.3 None
SRR29055674 MDR-TB lineage2.2.1 None
SAMN02403633 Pre-XDR-TB lineage2.2.2 za
SRR15014678 MDR-TB lineage2.2.1.1 None
SRR14781839 Sensitive lineage4.3.3 None
SRR21277736 Sensitive lineage2.2.1 None
SRR671865 Pre-XDR-TB lineage2.2.1 cn
ERR4797326 MDR-TB lineage2.2.1 in
SRR22528520 MDR-TB lineage4.3.3 None
SRR22528574 MDR-TB lineage4.3.3 None
SRR21276933 Pre-XDR-TB lineage2.2.1 None
SRR8380953 Other lineage1.2.2.1 in
SRR29539488 Sensitive lineage4.1 None
ERR11081020 MDR-TB lineage4.3.3 None
ERR4817524 Sensitive lineage4.8 gb
SRR15465763 Pre-XDR-TB lineage2.2.1 None
SRR26056428 HR-TB lineage1.2.2.1 None
ERR4818482 Other lineage4.8 gb
SRR25207317 MDR-TB lineage4.5 None
SRR10380236 Sensitive lineage4.3.3 None
SRR24827283 Pre-XDR-TB lineage4.2.2 None
ERR4813756 HR-TB lineage4.3.3 br
ERR2516459 MDR-TB lineage2.2.1 nl
SRR3082099 MDR-TB lineage4.8 None
SRR7069048 Sensitive lineage4.1.1.1 None
SRR7517764 MDR-TB lineage4.3.3 None
SRR25340946 Other lineage1.2.2.1 None
SRR6045455 Sensitive lineage4.1.1.1 gb
ERR7737794 MDR-TB lineage3.1.1 None
ERR11083060 MDR-TB lineage4.3.2 None
ERR4821764 Sensitive lineage4.8 gb
ERR11044680 MDR-TB lineage4.3.3 None
SRR23861713 RR-TB lineage4.8 None
SRR29055605 MDR-TB lineage2.2.1 None
SRR28045021 Pre-XDR-TB lineage4.1.1.3 None
SRR25515573 MDR-TB lineage2.2.1 None
ERR4819295 Sensitive lineage4.8 gb
ERR13243511 Pre-XDR-TB lineage2.2.2 None
ERR4819206 Other lineage4.8 None
ERR4797962 XDR-TB lineage4.1.1.3 in
ERR11068983 Sensitive lineage4.8 None
ERR9786265 Sensitive lineage4.3.4.2 None
SRR25206957 MDR-TB lineage4.4.2 None
ERR3132256 RR-TB lineage4.6.1.1 None
ERR176614 Sensitive lineage4.3.4.2.1 mw
SRR25827463 Pre-XDR-TB lineage2.2.1;lineage4.1.1.3 None
ERR11243606 Sensitive lineage4.8 None
ERR4818550 Sensitive lineage4.1.2.1 None
ERR7902766 Other lineage1.2.2.1 None
ERR4797912 Sensitive lineage4.1.1.3 in
ERR4821666 Other lineage4.8 gb
ERR751837 MDR-TB lineage2.2.1 th
SRR3085262 MDR-TB lineage4.2.1 None
SRR6832258 Sensitive lineage4.3.3 None
SRR15014766 MDR-TB lineage4.1.2.1 None
SRR12420584 RR-TB lineage2.2.1 None
ERR9119527 MDR-TB lineage4.1.4 None
ERR4553683 Pre-XDR-TB lineage4.1.1.1 None
ERR2653002 Sensitive lineage4.8 None
SRR7069830 Sensitive lineage4.1.1.1 None
ERR11775677 Sensitive lineage2.2.1 None
SRR1173752 Pre-XDR-TB lineage2.2.2 None
ERR234101 Sensitive lineage2.2.1 None
SRR1180999 Sensitive lineage4.8 None
ERR551610_ERR551611 MDR-TB lineage2.2.1 None
ERR8975980 MDR-TB lineage2.2.2 None
SRR22528531 MDR-TB lineage4.3.3 None
ERR4814012 Sensitive lineage4.3.3 br
ERR4872121 MDR-TB lineage4.1.4 None
ERR4814485 Sensitive lineage4.8 None
ERR12117954 MDR-TB lineage4.3.3 None
SRR10040330 MDR-TB lineage2.2.1 None
ERR551610 MDR-TB lineage2.2.1 None
ERR2677430 MDR-TB lineage2.2.1 de
SRR1174280 Pre-XDR-TB lineage2.2.2 None
ERR4810766 MDR-TB lineage4.4.2 cn
ERR11082810 MDR-TB lineage4.2.2.1 None
SRR11662589 MDR-TB lineage2.2.1 None
SRR22873595 MDR-TB lineage2.2.1 None
SRR22249468 MDR-TB lineage2.2.1 None
ERR4815652 Sensitive lineage4.8 gb
ERR4820520 Sensitive lineage4.8 gb
ERR4820781 Sensitive lineage4.8 None
ERR2179822 HR-TB lineage4.5 cn
ERR4832010 HR-TB lineage2.2.1 vn
ERR2653033 HR-TB lineage4.3.4.1 None
SRR28646099 MDR-TB lineage4.1.2.1 None
ERR176571 Sensitive lineage4.3.4.2.1 mw
SRR14164515 Sensitive lineage4.3.3 None
SRR3086354 MDR-TB lineage4.2.1 None
SRR18548992 Sensitive lineage4 None
SRR28393792 MDR-TB lineage4.1.1.3 None
ERR1193732 Sensitive lineage4.3.4.2 np
ERR2514855 Sensitive lineage4.1.1.1 gb
SRR28239593 Sensitive lineage4.8 None
ERR13439882 HR-TB lineage2.2.1 None
ERR4025094 Sensitive lineage4.3.4.2 None
ERR13439901 HR-TB lineage2.2.1 None
SRR29539858 HR-TB lineage4.3.4.2 None
SRR21662003 Sensitive lineage4.8 None
ERR13285036 MDR-TB lineage4.3.3 None
SRR7070147 Sensitive lineage4.8 None
ERR11068108 Other lineage1.2.2.1 None
SRR28498616 Sensitive lineage4.3.3 None
ERR2653060 Pre-XDR-TB lineage4.1.2.1 None
SRR29230679 Other lineage1.2.2.1 None
ERR13284647 MDR-TB lineage4.7 None
SRR29055955 MDR-TB lineage2.2.1 None
ERR4819334 Other lineage4.2.2.2 gb
ERR1465938 Sensitive lineage4.8 dz
ERR8976088 Pre-XDR-TB lineage2.2.2 None
SAMEA2534067 MDR-TB lineage2.2.1 uz
ERR4819770 Other lineage4.8 gb
ERR4831862 MDR-TB lineage2.2.1.1 vn
SRR12420496 RR-TB lineage2.2.1 None
SRR28393378 MDR-TB lineage4 None
SRR11662695 MDR-TB lineage2.2.1 None
SRR29231231 Sensitive lineage4.1.1.3 None
SRR6824543 MDR-TB lineage2.2.1 cn
SRR24256115 MDR-TB lineage4.3.3 None
SRR28868803 Other lineage2.2.1 None
SRR20969977 Pre-XDR-TB lineage2.2.2 None
SRR21239954 Sensitive lineage4.3.3 None
SRR998798 MDR-TB lineage4.1.3 None
SRR24799292 Sensitive lineage4.3.4.2 None
SRR25206909 Pre-XDR-TB lineage2.2.1 None
SRR5341306 Pre-XDR-TB lineage4.4 None
ERR4815606 Sensitive lineage4.8 gb
ERR5864802 Pre-XDR-TB lineage2.2.1 None
ERR6865789 Sensitive lineage4.3.4.2 None
DRR130106 Pre-XDR-TB lineage4.5 None
SRR5709921 MDR-TB lineage2.2.1 th
ERR3014593 Pre-XDR-TB lineage4.3.1 tn
ERR4831910 MDR-TB lineage2.2.1.1 None
SRR21587550 MDR-TB lineage4.3.4.2 None
SRR29051167 Other lineage2.2.1 None
ERR2513059 Sensitive lineage4.1.1.1 gb
ERR4832057 HR-TB lineage2.2.1 vn
ERR11798639 MDR-TB lineage4.3.3 None
SRR29231239 Sensitive lineage4.1.1.3 None
ERR4813987 Sensitive lineage4.1.2.1 br
ERR4815618 Sensitive lineage4.8 None
SRR21277076 Sensitive lineage4.2.2 None
ERR11049846 Other lineage1.2.2.1 None
ERR4423622 Pre-XDR-TB lineage4.9 None
ERR13276270 Pre-XDR-TB lineage4.3.3 None
ERR11049421 Sensitive lineage4.3.4.2 None
SRR6797769 Sensitive lineage4.3.4.2 None
ERR4810763 MDR-TB lineage4.4.2 cn
SRR7070065 Other lineage4.1.1.1 None
ERR2515755 Sensitive lineage4.4.1.1.1 za
ERR4832001 HR-TB lineage2.2.1 None
SRR18337392 Sensitive lineage4.8 None
SRR16115071 Pre-XDR-TB lineage4.2.2 None
ERR4798598 Pre-XDR-TB lineage3.1.2 in
SRR14782090 HR-TB lineage4.3.3 None
SRR5894882 MDR-TB lineage2.2.1 None
SRR1165269 Pre-XDR-TB lineage2.2.2 None
SRR6832134 HR-TB lineage4.3.3 None
SRR6981943 Sensitive lineage4.4.1.1.1 None
SRR6982465 Sensitive lineage4.3.4.2 None
ERR4814079 Sensitive lineage4.3.4.1 None
SRR27107258 Pre-XDR-TB lineage4.3 None
SRR11662566 MDR-TB lineage2.2.1 None
ERR9119498 MDR-TB lineage4.1.4 None
ERR550889 Sensitive lineage4.9 None
ERR8774236 Pre-XDR-TB lineage4.9 None
ERR4799128 Pre-XDR-TB lineage3.1.2.1 in
ERR4809357 Pre-XDR-TB lineage2.2.2 za
ERR6336753 Sensitive lineage1.2.1.2.1 None
ERR4819821 Other lineage4.8 None
ERR2513311 Sensitive lineage4.1.1.1 gb
ERR11044295 Sensitive lineage4.8 None
ERR979065 Sensitive lineage4.9 None
SRR998797 MDR-TB lineage4.1.3 None
ERR176512 Sensitive lineage4.3.4.2.1 mw
SRR22250057 Sensitive lineage4.5 None
ERR176536 Sensitive lineage4.3.4.2.1 mw
SRR21277749 Sensitive lineage2.2.1 None
ERR718273 MDR-TB lineage2.2.1 th
SRR998799 MDR-TB lineage4.1.3 None
SRR29217216 Sensitive lineage4.8 None
SRR29055635 MDR-TB lineage2.2.1 None
SAMN02231173 MDR-TB lineage4.1.3 None
ERR4813784 HR-TB lineage4.3.3 br
SRR20970020 HR-TB lineage2.2.1 None
ERR776466 Sensitive lineage4.3.2 None
ERR4817297 Other lineage4.8 None
SRR10040345 MDR-TB lineage2.2.1 None
ERR9786418 Other lineage4.3.4.2 None
ERR9657186 Other lineage1.2.2.1 None
ERR2515725 Pre-XDR-TB lineage2.2.2 za
SRR18714763 Sensitive lineage4.8 None
SRR7653022 MDR-TB lineage2.2.1 None
ERR2206051 Sensitive lineage4.3.2 None
SRR28389894 Sensitive lineage4.8 None
SRR14801637 HR-TB lineage4.2.1 None
ERR11466178 Sensitive lineage4.4.1.1 None
ERR10680071 MDR-TB lineage4.4.1.1 None
SRR28868784 HR-TB lineage2.2.1 None
SRR6484913 Pre-XDR-TB lineage2.2.1 None
SRR29274285 MDR-TB lineage4.8 None
ERR4813859 MDR-TB lineage4.3.4.1 br
ERR4822326 MDR-TB lineage2.2.1 de
ERR4819194 Sensitive lineage4.8 gb
SRR11567806 Pre-XDR-TB lineage2.2.1 None
ERR176822 Sensitive lineage4.3.4.2.1 mw
ERR9993146 XDR-TB lineage4.1.1.3 None
ERR12549710 Sensitive lineage4.3.3 None
ERR13276152 Pre-XDR-TB lineage4.1.1.3 None
ERR4813129 Pre-XDR-TB lineage2.2.1 None
SRR21277131 Sensitive lineage2.2.1 None
SRR21689740 Sensitive lineage4.3.1 None
SRR28239730 Sensitive lineage4.8 None
SRR28045691 XDR-TB lineage4.1.1.3 None
ERR13266647 XDR-TB lineage4.1.1.3 None
SRR6832376 HR-TB La1.5;lineage4 None
ERR13291645 Sensitive lineage4.3.3 None
ERR2510587 Pre-XDR-TB lineage3 pk
ERR2510591 MDR-TB lineage3.1.2 pk
ERR3335741 Pre-XDR-TB lineage3 pk
ERR13288830 XDR-TB lineage4.1.1.3 None
ERR13289684 Sensitive lineage4.1.1.1 None
SRR29385412 Pre-XDR-TB lineage2.2.2 None
SRR22528535 MDR-TB lineage4.3.3 None
SRR11662673 MDR-TB lineage2.2.1 None
ERR2516066 Pre-XDR-TB lineage2.2.2 za
ERR4800581 Pre-XDR-TB lineage2.2.1 in
SRR14802205 Sensitive lineage4.2.1.1 None
SRR21689620 Sensitive lineage4.7 None
ERR4822369 Pre-XDR-TB lineage4.5 None
ERR4828151 Other lineage2.2.1 vn
SRR1180947 Sensitive lineage4.8 None
SRR18337390 Sensitive lineage4.8 None
SRR7070398 Other lineage1.2.2.1 None
ERR4819526 Sensitive lineage4.8 gb
SRR22251653 HR-TB lineage4.1.1.3 None
SRR16089548 Other lineage1.2.2.1 None
SRR28239476 Sensitive lineage4.8 None
SRR16087954 Sensitive lineage4.3.3 None
ERR5918046 XDR-TB lineage4.1.1.3 za
SRR29772515 MDR-TB lineage2.2.1.1 None
ERR4799873 Pre-XDR-TB lineage2.2.1 in
ERR4821139 Other lineage4.8 gb
ERR4815732 Sensitive lineage4.8 gb
ERR11243480 Sensitive lineage4.8 None
SRR25827575 MDR-TB lineage4.1.1.3 None
SRR28409300 Sensitive lineage4.3.3 None
ERR6866435 Sensitive lineage4.1.2.1 None
ERR4815959 Sensitive lineage4.8 gb
SRR29772715 Pre-XDR-TB lineage1.2.2.1 None
SRR11567805 Pre-XDR-TB lineage2.2.1 None
ERR4814301 Sensitive lineage4.8 gb
SRR22137417 Pre-XDR-TB lineage2.2.1 None
SRR29056304 Sensitive lineage2.2.1.1 None
SAMEA2534162 MDR-TB lineage2.2.1 uz
ERR4798038 Other lineage4.6 in
ERR7363105 Sensitive lineage4.8 None
ERR4815958 Sensitive lineage4.8 gb
SRR11662577 MDR-TB lineage2.2.1 None
ERR6866213 Sensitive lineage4.8 None
ERR3273127 MDR-TB lineage4.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR11082041 Sensitive lineage4.8 None
ERR11044114 Sensitive lineage4.8 None
SRR25207309 Pre-XDR-TB lineage2.2.1 None
SRR13591449 Sensitive lineage4.8 None
ERR551611 MDR-TB lineage2.2.1 None
SRR28705414 Sensitive lineage4.8 None
SRR29539277 MDR-TB lineage4.3.3 None
ERR3287833 MDR-TB lineage4.3.3 pe
SRR7069592 Sensitive lineage4.8 None
SRR25207063 MDR-TB lineage4.4.2 None
SRR25827725 HR-TB lineage4.1.1.3 None
ERR4024557 Sensitive lineage4.3.4.2 None
SRR20969731 Other lineage2.2.1 None
ERR1465922 Sensitive lineage4.8 ch
SRR17856689 Other lineage1.2.2.1 None
ERR3148037 Pre-XDR-TB lineage4.3.3 None
SRR18337391 Sensitive lineage4.8 None
SRR11662570 Pre-XDR-TB lineage2.2.1 None
SRR7069195 Sensitive lineage4.8 None
SRR7069087 Sensitive lineage4.8 None
ERR4818786 Sensitive lineage4.8 None
ERR330724 Sensitive lineage3 None
SRR11662383 MDR-TB lineage2.2.1 None
ERR4407478 Other lineage4.6.2.2 None
ERR4800194 Other lineage1.2.2.1 in
ERR4815677 Other lineage4.8 gb
ERR4810724 MDR-TB lineage4.4.2 cn
SRR11662720 Pre-XDR-TB lineage2.2.1 None
SRR10869090 Sensitive lineage2.2.1.1 None
SRR6824337 Pre-XDR-TB lineage4.5 cn
ERR4800671 HR-TB lineage3 None
ERR4822611 Other lineage4.4.1.1 de
ERR228026 HR-TB lineage4.1 ru
SRR25207298 Pre-XDR-TB lineage2.2.1 None
ERR11068989 Sensitive lineage4.8 None
SRR4423144 Pre-XDR-TB lineage4.1.1.1 None
ERR13284863 MDR-TB lineage4.3.3 None
SRR21732440 Sensitive lineage3 None
ERR551745_ERR551743_ERR551744 MDR-TB lineage2.2.1 None
SRR25827730 MDR-TB lineage2.2.1.1;lineage4.3.3 None
ERR2516607 MDR-TB lineage4.1.2.1 nl
ERR11049272 Sensitive lineage4.8 None
ERR12328166 HR-TB lineage1.1.1;lineage2.2.1 None
ERR4816202 Sensitive lineage4.8 gb
SRR2101162 Sensitive lineage3 None