Run ID: ERR161047
Sample name:
Date: 31-03-2023 14:44:19
Number of reads: 7309434
Percentage reads mapped: 85.07
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 0.98 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 0.99 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9138 | p.Gln613Glu | missense_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777416 | c.1065G>T | synonymous_variant | 0.98 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302857 | c.-74G>A | upstream_gene_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472733 | n.888G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472742 | n.897C>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476624 | n.2967T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476637 | n.2980C>G | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.99 |
ndh | 2102990 | p.Val18Ala | missense_variant | 0.99 |
PPE35 | 2168479 | p.Thr712Pro | missense_variant | 0.99 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 0.99 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.22 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 0.98 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568779 | c.-100T>C | upstream_gene_variant | 0.98 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 0.98 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.23 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |