TB-Profiler result

Run: ERR3283035
Summary

Run ID: ERR3283035

Sample name:

Date: 01-04-2023 01:18:37

Number of reads: 18863

Percentage reads mapped: 0.75

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767167 c.3798C>G synonymous_variant 1.0
rpoC 767180 p.Ala1271Gln missense_variant 1.0
rpoC 767191 c.3822C>G synonymous_variant 1.0
rpoC 767230 c.3861G>C synonymous_variant 1.0
rpoC 767233 c.3864T>C synonymous_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.67
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.67
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 1.0
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 1.0
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 1.0
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 1.0
rrs 1472573 n.728C>A non_coding_transcript_exon_variant 1.0
rrs 1472574 n.729T>C non_coding_transcript_exon_variant 0.67
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.67
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.67
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.67
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.67
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.67
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.67
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 1.0
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.67
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 1.0
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1472887 n.1042G>C non_coding_transcript_exon_variant 1.0
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.99
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.99
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.99
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.99
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.98
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.99
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.99
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.99
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.99
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.99
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.99
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.99
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.99
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.99
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.99
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.99
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.99
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.97
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 1.0
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.98
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473097 n.1252G>C non_coding_transcript_exon_variant 1.0
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrl 1474839 n.1182C>T non_coding_transcript_exon_variant 1.0
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.67
rrl 1474875 n.1218G>A non_coding_transcript_exon_variant 0.67
rrl 1474876 n.1219T>A non_coding_transcript_exon_variant 0.67
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 1.0
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 1.0
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.98
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.97
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.97
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.96
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.98
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.97
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.99
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 1.0
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.97
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.99
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.98
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.99
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.98
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.98
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.97
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.97
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.97
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 1.0
kasA 2518711 c.597A>G synonymous_variant 1.0
kasA 2518714 c.600A>C synonymous_variant 1.0
kasA 2518747 c.633C>G synonymous_variant 1.0
kasA 2518783 c.669T>C synonymous_variant 1.0
kasA 2518789 c.675G>T synonymous_variant 1.0
kasA 2518795 c.681C>G synonymous_variant 1.0