Run ID: ERR4816265
Sample name:
Date: 01-04-2023 14:20:07
Number of reads: 2627195
Percentage reads mapped: 99.24
Strain: lineage4.7
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.6 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6358 | c.-944C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7379 | c.78C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473029 | n.1184C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473742 | n.85G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168828 | c.1785G>A | synonymous_variant | 1.0 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 1.0 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |