Run ID: ERR4821829
Sample name:
Date: 01-04-2023 17:28:38
Number of reads: 3555422
Percentage reads mapped: 97.57
Strain: lineage1.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 1.0 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.39 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrB | 6124 | c.885C>T | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9047 | c.1746C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9443 | c.2142G>A | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576000 | p.Asp218Ala | missense_variant | 1.0 |
rpoB | 760490 | c.684C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775979 | c.2502G>A | synonymous_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776395 | p.Phe696Leu | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473615 | n.-43G>C | upstream_gene_variant | 1.0 |
rrl | 1474448 | n.791T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474637 | n.980C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474643 | n.986A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474706 | n.1049G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474711 | n.1054G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474734 | n.1077G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475910 | n.2253A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.24 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167983 | p.Gly877Asp | missense_variant | 1.0 |
PPE35 | 2169369 | p.Gly415Ala | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715312 | p.Ser7Arg | missense_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064632 | c.1560C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 1.0 |
embA | 4243875 | c.643C>T | synonymous_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |