Run ID: ERR9786092
Sample name:
Date: 02-04-2023 12:07:49
Number of reads: 2632466
Percentage reads mapped: 99.52
Strain: lineage6.3.1;lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.48 |
lineage6 | West-Africa 2 | AFRI_1 | RD702 | 0.5 |
lineage4.1 | Euro-American | T;X;H | None | 0.5 |
lineage6.3 | West-Africa 2 | AFRI_1 | RD702 | 0.53 |
lineage4.1.2 | Euro-American | T;H | None | 0.48 |
lineage6.3.1 | West-Africa 2 | AFRI_1 | RD702 | 0.52 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.51 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6446 | p.Ala403Ser | missense_variant | 0.5 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.52 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.46 |
fgd1 | 491668 | p.Lys296Glu | missense_variant | 0.55 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.52 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.47 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.53 |
rpoB | 760969 | p.Ser388Leu | missense_variant | 0.41 |
rpoB | 761723 | p.Glu639Asp | missense_variant | 0.4 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.32 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.43 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.55 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.44 |
Rv1258c | 1406363 | c.978A>G | synonymous_variant | 0.46 |
atpE | 1461251 | c.207G>T | synonymous_variant | 0.49 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.51 |
inhA | 1674434 | p.Val78Ala | missense_variant | 0.52 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102022 | p.Lys341Glu | missense_variant | 0.37 |
ndh | 2102694 | p.Val117Ile | missense_variant | 0.54 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.55 |
katG | 2155503 | c.609C>T | synonymous_variant | 0.5 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.51 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 0.5 |
Rv1979c | 2222852 | p.Ala105Thr | missense_variant | 0.5 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 0.53 |
kasA | 2518132 | c.18C>T | synonymous_variant | 0.45 |
Rv2752c | 3065143 | p.Gly350Val | missense_variant | 0.48 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 0.52 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3086958 | p.Asp47Tyr | missense_variant | 0.52 |
ald | 3087084 | c.266delA | frameshift_variant | 0.46 |
Rv3083 | 3449781 | c.1278G>A | synonymous_variant | 0.53 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474911 | p.Val302Gly | missense_variant | 0.54 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 0.48 |
rpoA | 3877696 | p.Thr271Ile | missense_variant | 0.39 |
clpC1 | 4040489 | c.216G>A | synonymous_variant | 0.49 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.53 |
embC | 4241843 | p.Leu661Ile | missense_variant | 0.47 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.47 |
embA | 4244220 | c.988C>T | synonymous_variant | 0.38 |
embA | 4244379 | p.Pro383Ser | missense_variant | 0.44 |
embB | 4246864 | c.351C>T | synonymous_variant | 0.42 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.46 |
embB | 4249677 | p.Arg1055His | missense_variant | 0.52 |
aftB | 4268477 | c.360C>T | synonymous_variant | 0.5 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 0.47 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.5 |
aftB | 4269522 | c.-686C>T | upstream_gene_variant | 0.42 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.47 |
ethA | 4326465 | p.Ile337Val | missense_variant | 0.54 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.46 |