Run ID: SRR1792372
Sample name:
Date: 03-04-2023 18:59:11
Number of reads: 1117391
Percentage reads mapped: 81.87
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrB | 5814 | p.Arg192Leu | missense_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 6784 | c.-518C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.22 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472659 | n.814G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472698 | n.853A>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476572 | n.2915G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476573 | n.2916A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.11 |
rpsA | 1834845 | c.1313_1315delCCG | disruptive_inframe_deletion | 1.0 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 0.98 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.11 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.11 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289268 | c.-27G>A | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fbiD | 3339031 | c.-87T>C | upstream_gene_variant | 1.0 |
fbiD | 3339231 | c.114G>C | synonymous_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |