TB-Profiler result

Run: SRR3675537
Summary

Run ID: SRR3675537

Sample name:

Date: 04-04-2023 05:32:31

Number of reads: 15774

Percentage reads mapped: 4.09

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6982 c.-320A>G upstream_gene_variant 1.0
gyrA 6985 c.-317C>T upstream_gene_variant 1.0
gyrA 6988 c.-314C>G upstream_gene_variant 1.0
gyrA 7006 c.-296T>G upstream_gene_variant 1.0
gyrB 7010 p.Leu591Met missense_variant 1.0
gyrA 7015 c.-287G>A upstream_gene_variant 1.0
gyrA 7018 c.-284G>C upstream_gene_variant 1.0
gyrA 7024 c.-278G>C upstream_gene_variant 1.0
gyrA 7033 c.-269G>C upstream_gene_variant 1.0
gyrB 7051 p.Glu604Asp missense_variant 1.0
gyrA 7060 c.-242T>C upstream_gene_variant 1.0
gyrA 7066 c.-236G>T upstream_gene_variant 1.0
gyrA 7078 c.-224A>G upstream_gene_variant 1.0
gyrA 7081 c.-221T>C upstream_gene_variant 1.0
gyrA 7084 c.-218A>G upstream_gene_variant 1.0
gyrA 7090 c.-212C>T upstream_gene_variant 1.0
gyrA 7093 c.-209T>C upstream_gene_variant 1.0
gyrA 7100 c.-202T>C upstream_gene_variant 1.0
gyrA 7123 c.-179C>G upstream_gene_variant 1.0
gyrA 7126 c.-176G>C upstream_gene_variant 1.0
gyrA 7129 c.-173T>G upstream_gene_variant 1.0
gyrA 7132 c.-170T>C upstream_gene_variant 1.0
gyrA 7135 c.-167G>A upstream_gene_variant 1.0
gyrA 7136 c.-166T>C upstream_gene_variant 1.0
gyrA 7141 c.-161T>G upstream_gene_variant 1.0
gyrA 7144 c.-158A>G upstream_gene_variant 1.0
gyrA 7150 c.-152G>A upstream_gene_variant 1.0
gyrA 7153 c.-149G>C upstream_gene_variant 1.0
gyrA 7168 c.-134C>G upstream_gene_variant 1.0
gyrA 7178 c.-124T>C upstream_gene_variant 1.0
gyrA 7186 c.-116C>G upstream_gene_variant 1.0
gyrA 7189 c.-113C>T upstream_gene_variant 1.0
gyrA 7198 c.-104C>T upstream_gene_variant 1.0
gyrA 7745 c.444G>A synonymous_variant 1.0
gyrA 7760 c.459C>T synonymous_variant 1.0
gyrA 7763 c.462T>G synonymous_variant 1.0
rpoB 760481 c.675G>C synonymous_variant 1.0
rpoB 760484 c.678A>G synonymous_variant 1.0
rpoB 760502 c.696C>G synonymous_variant 1.0
rpoB 760522 p.Ser239Asn missense_variant 1.0
rpoB 760532 c.726T>C synonymous_variant 1.0
rpoB 760541 c.735G>C synonymous_variant 1.0
rpoB 760561 c.757_758delCG frameshift_variant 1.0
rpoB 760567 p.Ser254Trp missense_variant 1.0
rpoB 760568 c.762_763insGC frameshift_variant 1.0
rpoB 760571 c.765G>C synonymous_variant 1.0
rpoB 760588 p.Thr261Ile missense_variant 1.0
rpoB 760591 p.Val262Ala missense_variant 1.0
rpoB 760595 c.789C>T synonymous_variant 1.0
rpoB 760596 p.Thr264Pro missense_variant 1.0
rpoB 760608 c.802C>T synonymous_variant 1.0
rpoB 760611 c.805T>C synonymous_variant 1.0
rpoB 760820 c.1014T>C synonymous_variant 1.0
rpoB 760826 c.1020C>G synonymous_variant 1.0
rpoB 760830 c.1024T>C synonymous_variant 1.0
rpoB 760841 c.1035T>C synonymous_variant 1.0
rpoB 760858 p.Val351Ala missense_variant 1.0
rpoB 760862 c.1056G>C synonymous_variant 1.0
rpoB 760865 c.1059C>T synonymous_variant 1.0
rpoB 760886 p.Glu360Asp missense_variant 1.0
rpoB 760887 p.Thr361Val missense_variant 1.0
rpoB 760910 c.1104C>T synonymous_variant 1.0
rpoB 760916 c.1110C>T synonymous_variant 1.0
rpoB 760928 c.1122G>C synonymous_variant 1.0
rpoB 760943 c.1137C>T synonymous_variant 1.0
rpoB 760946 c.1140A>G synonymous_variant 1.0
rpoB 760965 p.Met387Leu missense_variant 1.0
rpoB 760970 c.1164G>C synonymous_variant 1.0
rpoB 761027 c.1221A>C synonymous_variant 1.0
rpoB 761036 c.1230G>C synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761051 c.1245G>T synonymous_variant 1.0
rpoB 761054 c.1248G>C synonymous_variant 1.0
rpoB 761057 c.1251G>C synonymous_variant 1.0
rpoB 761060 c.1254C>G synonymous_variant 1.0
rpoB 761063 c.1257C>G synonymous_variant 1.0
rpoB 761084 c.1278C>A synonymous_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761132 c.1326G>C synonymous_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 1.0
rpoB 761147 c.1341C>T synonymous_variant 1.0
rpoB 761150 c.1344A>T synonymous_variant 1.0
rpoB 761936 c.2130C>T synonymous_variant 1.0
rpoB 761948 c.2142G>C synonymous_variant 1.0
rpoB 761954 c.2148C>A synonymous_variant 1.0
rpoB 761955 p.Ile717Val missense_variant 1.0
rpoB 761969 c.2163G>A synonymous_variant 1.0
rpoB 761990 c.2184G>C synonymous_variant 0.75
rpoB 762008 c.2202C>T synonymous_variant 0.75
rpoB 762014 c.2208C>G synonymous_variant 0.75
rpoB 762038 c.2232C>T synonymous_variant 0.67
rpoB 762047 c.2241G>A synonymous_variant 0.67
rpoB 762053 c.2247T>C synonymous_variant 0.67
rpoB 762056 c.2250G>A synonymous_variant 0.67
rpoB 762065 c.2259T>G synonymous_variant 0.67
rpoB 762083 c.2277T>C synonymous_variant 0.67
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 1.0
rpoC 763531 c.162G>T synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763657 c.288G>A synonymous_variant 1.0
rpoC 763879 c.510A>G synonymous_variant 1.0
rpoC 763888 c.519G>T synonymous_variant 1.0
rpoC 763891 c.522G>C synonymous_variant 1.0
rpoC 763894 c.525A>G synonymous_variant 1.0
rpoC 763900 c.531G>C synonymous_variant 1.0
rpoC 763933 c.564C>T synonymous_variant 1.0
rpoC 763940 p.Ala191Ser missense_variant 1.0
rpoC 763945 c.576T>C synonymous_variant 1.0
rpoC 763947 p.Ala193Val missense_variant 1.0
rpoC 763951 c.582G>C synonymous_variant 1.0
rpoC 763960 c.591T>G synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764431 c.1062G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764510 c.1141C>T synonymous_variant 1.0
rpoC 766996 c.3627C>T synonymous_variant 1.0
rpoC 767002 c.3633G>C synonymous_variant 1.0
rpoC 767008 c.3639G>A synonymous_variant 1.0
rpoC 767023 c.3654C>T synonymous_variant 0.67
rpoC 767044 c.3675G>C synonymous_variant 0.67
rpoC 767080 c.3711G>C synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767104 c.3735C>G synonymous_variant 1.0
rpoC 767107 c.3738C>T synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767125 c.3756G>C synonymous_variant 1.0
rpoC 767134 c.3765C>T synonymous_variant 1.0
rpoC 767138 c.3769C>T synonymous_variant 1.0
rpoC 767149 c.3780C>T synonymous_variant 1.0
rpoC 767158 c.3789T>C synonymous_variant 1.0
rpoC 767179 c.3810C>T synonymous_variant 1.0
rpoC 767180 p.Ala1271Ser missense_variant 1.0
rpoC 767191 c.3822C>G synonymous_variant 1.0
rpoC 767197 c.3828G>A synonymous_variant 1.0
rpoC 767203 c.3834C>G synonymous_variant 1.0
rpoC 767206 c.3837C>G synonymous_variant 1.0
rpoC 767209 c.3840T>C synonymous_variant 1.0
rpoC 767212 c.3843G>C synonymous_variant 1.0
rpoC 767221 c.3852C>G synonymous_variant 1.0
rpoC 767230 c.3861G>C synonymous_variant 1.0
rpsL 781706 c.147T>C synonymous_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 1.0
rrs 1471931 n.87delA non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471956 n.111A>C non_coding_transcript_exon_variant 0.33
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 1.0
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 1.0
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 1.0
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 1.0
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 1.0
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 1.0
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 1.0
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 1.0
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 1.0
rrs 1472043 n.198T>A non_coding_transcript_exon_variant 1.0
rrs 1472050 n.205G>C non_coding_transcript_exon_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 1.0
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 1.0
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 1.0
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 1.0
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 1.0
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 1.0
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 1.0
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 1.0
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 1.0
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 1.0
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 1.0
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 1.0
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 0.85
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.85
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.85
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.85
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.86
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.91
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.91
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.91
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.91
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.95
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 1.0
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 1.0
rrl 1473684 n.27G>A non_coding_transcript_exon_variant 1.0
rrl 1473699 n.43delG non_coding_transcript_exon_variant 1.0
rrl 1473707 n.50T>A non_coding_transcript_exon_variant 1.0
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 1.0
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 1.0
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 1.0
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473770 n.113T>C non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 1.0
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 1.0
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 1.0
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 1.0
rrl 1474089 n.432C>T non_coding_transcript_exon_variant 1.0
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 1.0
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 1.0
rrl 1474103 n.446A>C non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524_525insT non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 1.0
rrl 1474185 n.529delA non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 1.0
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474413 n.756A>C non_coding_transcript_exon_variant 1.0
rrl 1474415 n.759_781delCACACGCGCATACGCGCGTGTGA non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1475061 n.1406delA non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.88
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.88
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.89
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.89
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.89
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 1.0
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 0.92
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.92
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.92
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 1.0
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476665 n.3008T>A non_coding_transcript_exon_variant 1.0
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 1.0
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 1.0
rrl 1476684 n.3027C>T non_coding_transcript_exon_variant 1.0
rpsA 1833616 c.75A>T synonymous_variant 1.0
rpsA 1833619 c.78A>C synonymous_variant 1.0
rpsA 1833625 c.84A>G synonymous_variant 1.0
rpsA 1833664 c.123C>G synonymous_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833679 c.138G>T synonymous_variant 1.0
rpsA 1833685 c.144G>C synonymous_variant 1.0
rpsA 1833691 c.150G>A synonymous_variant 1.0
rpsA 1833697 c.156C>T synonymous_variant 1.0
rpsA 1833700 c.159C>T synonymous_variant 1.0
rpsA 1833709 c.168C>T synonymous_variant 1.0
rpsA 1833724 c.183C>T synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833733 c.192C>G synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833745 c.204G>C synonymous_variant 1.0
rpsA 1833748 c.207C>G synonymous_variant 1.0
rpsA 1833760 c.219C>T synonymous_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833790 c.249T>C synonymous_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1833811 c.270G>T synonymous_variant 1.0
rpsA 1833823 c.282G>A synonymous_variant 1.0
rpsA 1833832 c.291G>A synonymous_variant 1.0
rpsA 1833838 c.297G>C synonymous_variant 1.0
rpsA 1833841 c.300C>G synonymous_variant 1.0
rpsA 1833949 c.408T>C synonymous_variant 1.0
rpsA 1833961 c.420C>G synonymous_variant 1.0
rpsA 1833970 c.429G>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833991 c.450C>G synonymous_variant 1.0
rpsA 1834000 c.459G>C synonymous_variant 1.0
rpsA 1834009 c.468C>T synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834021 c.480C>T synonymous_variant 1.0
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834033 c.492C>T synonymous_variant 1.0
rpsA 1834073 p.Lys178Arg missense_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834375 c.834G>C synonymous_variant 1.0
rpsA 1834396 c.855G>C synonymous_variant 1.0
rpsA 1834411 c.870T>G synonymous_variant 1.0
rpsA 1834414 c.873C>T synonymous_variant 1.0
rpsA 1834417 c.876G>C synonymous_variant 1.0
rpsA 1834423 c.882G>C synonymous_variant 1.0
rpsA 1834429 c.888C>T synonymous_variant 1.0
rpsA 1834438 c.897C>T synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834456 c.915T>G synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834477 c.936C>T synonymous_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 1.0
kasA 2517953 c.-162C>T upstream_gene_variant 1.0
kasA 2517962 c.-153C>G upstream_gene_variant 1.0
kasA 2517968 c.-147T>A upstream_gene_variant 1.0
kasA 2517974 c.-141T>C upstream_gene_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 1.0
rpoA 3877593 c.915C>T synonymous_variant 1.0
rpoA 3877614 c.894G>A synonymous_variant 1.0
rpoA 3877620 c.888G>A synonymous_variant 1.0
rpoA 3877638 c.870T>C synonymous_variant 1.0
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877665 c.843C>G synonymous_variant 1.0
rpoA 3877677 c.831G>C synonymous_variant 1.0
rpoA 3877680 c.828G>C synonymous_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 1.0
rpoA 3877692 c.816G>C synonymous_variant 1.0
rpoA 3877704 c.804G>T synonymous_variant 1.0
rpoA 3877728 c.780C>G synonymous_variant 1.0
rpoA 3877731 c.777G>C synonymous_variant 1.0
rpoA 3877734 c.774G>C synonymous_variant 1.0
rpoA 3877737 c.771G>C synonymous_variant 1.0
rpoA 3877743 c.765T>C synonymous_variant 1.0
rpoA 3877749 c.759C>T synonymous_variant 1.0
rpoA 3877752 p.Asp252Glu missense_variant 1.0
rpoA 3877755 c.753C>T synonymous_variant 1.0
rpoA 3877758 c.750G>C synonymous_variant 1.0
rpoA 3877764 c.744C>A synonymous_variant 1.0
rpoA 3877770 c.738A>G synonymous_variant 1.0
rpoA 3877773 c.735G>C synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
rpoA 3877782 c.726T>C synonymous_variant 1.0
rpoA 3877797 c.711G>A synonymous_variant 1.0
rpoA 3877815 c.693C>T synonymous_variant 1.0
rpoA 3877818 c.690A>G synonymous_variant 1.0
rpoA 3877836 c.672A>G synonymous_variant 1.0
rpoA 3877839 c.669G>A synonymous_variant 1.0
rpoA 3877896 c.612G>A synonymous_variant 1.0
rpoA 3877905 c.603A>G synonymous_variant 1.0
rpoA 3877908 c.600T>C synonymous_variant 1.0
rpoA 3877920 c.588G>C synonymous_variant 1.0
rpoA 3877923 c.585C>T synonymous_variant 1.0
rpoA 3877931 p.Ile193Val missense_variant 1.0
rpoA 3878271 c.237T>C synonymous_variant 1.0
rpoA 3878283 p.Glu75Asp missense_variant 1.0
rpoA 3878292 c.216T>C synonymous_variant 1.0
rpoA 3878298 c.210A>G synonymous_variant 1.0
rpoA 3878301 c.207C>G synonymous_variant 1.0
rpoA 3878310 c.198G>T synonymous_variant 1.0
rpoA 3878313 c.195G>C synonymous_variant 1.0
rpoA 3878322 c.186A>G synonymous_variant 1.0
rpoA 3878331 c.177A>G synonymous_variant 1.0
clpC1 4039022 c.1683A>G synonymous_variant 1.0
clpC1 4039046 c.1659C>G synonymous_variant 1.0
clpC1 4039070 c.1635G>C synonymous_variant 1.0
clpC1 4039077 p.Lys543Arg missense_variant 1.0
clpC1 4039079 c.1626C>G synonymous_variant 1.0
clpC1 4039085 c.1620A>G synonymous_variant 1.0
clpC1 4039091 c.1614G>T synonymous_variant 1.0
clpC1 4039097 c.1608G>T synonymous_variant 1.0
clpC1 4039103 c.1602T>C synonymous_variant 1.0
clpC1 4039106 c.1599G>C synonymous_variant 1.0
clpC1 4039121 c.1584T>C synonymous_variant 1.0
clpC1 4039142 c.1563A>G synonymous_variant 0.86
clpC1 4039145 c.1560G>C synonymous_variant 0.83
clpC1 4039169 p.Glu512Asp missense_variant 0.75
clpC1 4039172 c.1533A>G synonymous_variant 0.75
clpC1 4039178 c.1527G>C synonymous_variant 0.8
clpC1 4039183 c.1522T>C synonymous_variant 0.8
clpC1 4039190 c.1515C>T synonymous_variant 0.8
clpC1 4039196 c.1509G>A synonymous_variant 0.8
clpC1 4039199 p.Ala502Glu missense_variant 0.75
clpC1 4039208 c.1497C>G synonymous_variant 0.8
clpC1 4039220 c.1485G>C synonymous_variant 0.8
clpC1 4039262 c.1443C>T synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 0.67
clpC1 4039466 c.1239T>C synonymous_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 1.0
clpC1 4039472 c.1233G>C synonymous_variant 1.0
clpC1 4039478 c.1227G>C synonymous_variant 1.0
clpC1 4039481 c.1224T>C synonymous_variant 1.0
clpC1 4039487 c.1218G>C synonymous_variant 1.0
clpC1 4039528 c.1177C>A synonymous_variant 1.0
clpC1 4039541 c.1164C>G synonymous_variant 1.0
clpC1 4039544 c.1161C>T synonymous_variant 1.0
clpC1 4039559 c.1146C>G synonymous_variant 1.0
clpC1 4039565 c.1140G>T synonymous_variant 1.0
clpC1 4039570 p.Met379Leu missense_variant 1.0
clpC1 4039571 c.1134G>A synonymous_variant 1.0
clpC1 4039574 p.Ala377Gly missense_variant 1.0
clpC1 4039586 c.1119G>C synonymous_variant 1.0
clpC1 4039601 c.1104G>A synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039619 c.1086G>A synonymous_variant 1.0
clpC1 4039622 c.1083C>T synonymous_variant 1.0
clpC1 4039649 c.1056G>C synonymous_variant 1.0
clpC1 4039661 c.1044T>C synonymous_variant 1.0
clpC1 4039826 c.879C>G synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039832 c.873C>G synonymous_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039868 c.837C>T synonymous_variant 1.0
clpC1 4039913 c.792C>T synonymous_variant 1.0
clpC1 4039931 c.774T>C synonymous_variant 0.83
clpC1 4039934 c.771G>C synonymous_variant 0.83
clpC1 4039943 c.762G>C synonymous_variant 0.8
clpC1 4039946 c.759A>G synonymous_variant 0.8
clpC1 4039952 c.753T>C synonymous_variant 0.8
clpC1 4039957 c.748C>T synonymous_variant 0.8
clpC1 4039958 c.747G>C synonymous_variant 0.8
clpC1 4039964 c.741C>G synonymous_variant 0.8
clpC1 4039975 p.Asp244Asn missense_variant 0.8
clpC1 4039979 c.726C>G synonymous_variant 0.8
clpC1 4039982 c.723G>A synonymous_variant 0.8
clpC1 4040009 c.696C>G synonymous_variant 0.67
clpC1 4040015 c.690G>C synonymous_variant 0.75
clpC1 4040021 c.684A>T synonymous_variant 0.67
clpC1 4040024 c.681A>G synonymous_variant 0.67
clpC1 4040126 c.579C>T synonymous_variant 1.0
clpC1 4040141 c.564C>T synonymous_variant 1.0
clpC1 4040144 c.561G>C synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0
clpC1 4040153 c.552A>G synonymous_variant 1.0
clpC1 4040159 c.546G>C synonymous_variant 1.0
clpC1 4040480 c.225T>C synonymous_variant 1.0
clpC1 4040495 c.210C>T synonymous_variant 1.0
clpC1 4040522 c.183T>C synonymous_variant 1.0
clpC1 4040531 c.174T>G synonymous_variant 1.0