Rv1908c - c.375C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
0 RR-TB
59 HR-TB
8 MDR-TB
15 Pre-XDR-TB
1 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 3 |
| lineage2;lineage4.9 | 2 |
| lineage4.9 | 17 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.2 | 13 |
| lineage2.2.1.1 | 3 |
| lineage4.4.2 | 2 |
| lineage2 | 1 |
| lineage2.2.1 | 25 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.2;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage2.2.1;lineage2.2.2 | 4 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 6 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage2.2.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1048980 | HR-TB | lineage3 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR1048981 | HR-TB | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1049023 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR14801749 | HR-TB | lineage4.9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR1048965 | HR-TB | lineage2.2.1 | None |
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