Run ID: SRR13861151
Sample name:
Date: 03-04-2023 09:24:47
Number of reads: 739881
Percentage reads mapped: 12.34
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761131 | p.Gly442Glu | missense_variant | 0.25 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6148 | c.909C>G | synonymous_variant | 0.16 |
gyrB | 6209 | c.970C>T | synonymous_variant | 0.17 |
gyrB | 6214 | c.975G>C | synonymous_variant | 0.18 |
gyrB | 6217 | c.978G>C | synonymous_variant | 0.19 |
gyrB | 6223 | c.984G>C | synonymous_variant | 0.19 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 0.14 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.15 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.15 |
gyrA | 6824 | c.-478C>T | upstream_gene_variant | 0.14 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.14 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.15 |
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.18 |
gyrA | 9502 | p.Arg734His | missense_variant | 1.0 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.15 |
fgd1 | 491241 | p.Asp153Glu | missense_variant | 0.18 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.21 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.18 |
fgd1 | 491286 | c.504G>C | synonymous_variant | 0.15 |
fgd1 | 491292 | c.510G>C | synonymous_variant | 0.15 |
fgd1 | 491295 | c.513C>G | synonymous_variant | 0.14 |
fgd1 | 491296 | p.Val172Ile | missense_variant | 0.14 |
fgd1 | 491331 | c.549G>A | synonymous_variant | 0.15 |
fgd1 | 491343 | c.561C>G | synonymous_variant | 0.17 |
fgd1 | 491349 | c.567T>C | synonymous_variant | 0.18 |
ccsA | 620331 | c.441C>T | synonymous_variant | 0.13 |
ccsA | 620340 | c.450C>G | synonymous_variant | 0.13 |
ccsA | 620362 | p.Ala158Thr | missense_variant | 0.14 |
ccsA | 620367 | c.477T>C | synonymous_variant | 0.14 |
ccsA | 620373 | c.483C>G | synonymous_variant | 0.15 |
ccsA | 620385 | c.495G>C | synonymous_variant | 0.14 |
ccsA | 620388 | c.498A>G | synonymous_variant | 0.13 |
ccsA | 620412 | c.522T>C | synonymous_variant | 0.13 |
ccsA | 620415 | c.525T>C | synonymous_variant | 0.14 |
ccsA | 620461 | p.Val191Ile | missense_variant | 0.12 |
ccsA | 620703 | c.813G>C | synonymous_variant | 0.15 |
ccsA | 620739 | c.849A>G | synonymous_variant | 0.13 |
ccsA | 620745 | c.855G>C | synonymous_variant | 0.17 |
ccsA | 620778 | c.888T>C | synonymous_variant | 0.15 |
ccsA | 620787 | c.897C>G | synonymous_variant | 0.19 |
rpoB | 759681 | c.-126C>T | upstream_gene_variant | 0.95 |
rpoB | 760130 | p.Asp108Glu | missense_variant | 0.17 |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.17 |
rpoB | 760142 | c.336C>G | synonymous_variant | 0.15 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.16 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.16 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.16 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.17 |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.14 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.14 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.15 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.14 |
rpoB | 761126 | c.1320G>T | synonymous_variant | 0.25 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.25 |
rpoB | 761133 | p.Leu443Ile | missense_variant | 0.25 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.24 |
rpoB | 761151 | p.Leu449Val | missense_variant | 0.24 |
rpoB | 761156 | c.1350G>C | synonymous_variant | 0.27 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.26 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.26 |
rpoB | 761168 | c.1362C>G | synonymous_variant | 0.26 |
rpoB | 761178 | p.Ser458Thr | missense_variant | 0.27 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.28 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.29 |
rpoB | 761196 | p.Leu464Phe | missense_variant | 0.28 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.27 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.28 |
rpoB | 761213 | c.1407G>A | synonymous_variant | 0.28 |
rpoB | 761220 | p.Ser472Thr | missense_variant | 0.29 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.32 |
rpoB | 761235 | p.Met477Val | missense_variant | 0.32 |
rpoB | 761239 | p.Cys478Tyr | missense_variant | 0.68 |
rpoB | 761792 | c.1986T>C | synonymous_variant | 0.12 |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.14 |
rpoC | 762395 | c.-975G>C | upstream_gene_variant | 0.14 |
rpoC | 762398 | c.-972T>C | upstream_gene_variant | 0.14 |
rpoC | 762470 | c.-900G>C | upstream_gene_variant | 0.14 |
rpoC | 762860 | c.-510G>C | upstream_gene_variant | 0.16 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.15 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.15 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.15 |
rpoB | 762888 | p.His1028Asn | missense_variant | 0.14 |
rpoB | 762911 | p.Ile1035Met | missense_variant | 0.15 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.14 |
rpoC | 762936 | c.-434_-432delTCGinsAGC | upstream_gene_variant | 0.15 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.15 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.14 |
rpoC | 762971 | c.-399G>A | upstream_gene_variant | 0.14 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.15 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.19 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.19 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.14 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.15 |
rpoC | 764101 | c.732C>G | synonymous_variant | 0.15 |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.16 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.17 |
rpoC | 764195 | p.Ser276Gln | missense_variant | 0.15 |
rpoC | 764203 | c.834G>T | synonymous_variant | 0.16 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.17 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.14 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.25 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.16 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.29 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.28 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.15 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.17 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.15 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.16 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.15 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.14 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.26 |
rpoC | 764530 | c.1161C>G | synonymous_variant | 0.21 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.19 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.22 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.16 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.16 |
rpoC | 764576 | p.Ser403Thr | missense_variant | 0.12 |
rpoC | 765739 | c.2370G>C | synonymous_variant | 0.13 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.16 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.19 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.19 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.15 |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.17 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.19 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.19 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.18 |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.18 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.18 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.19 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.18 |
rpoC | 766978 | c.3609C>G | synonymous_variant | 0.14 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.15 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.15 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.15 |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.15 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.19 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.19 |
rpoC | 767074 | c.3705T>C | synonymous_variant | 0.23 |
mmpL5 | 776185 | p.Lys766Glu | missense_variant | 1.0 |
mmpL5 | 779400 | c.-920C>A | upstream_gene_variant | 1.0 |
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.14 |
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.14 |
fbiC | 1304646 | c.1716T>C | synonymous_variant | 0.14 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.13 |
rrs | 1471969 | n.124T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472865 | n.1020C>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473944 | n.287G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473945 | n.288T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474051 | n.394T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474056 | n.399T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474104 | n.447G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474112 | n.455T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474959 | n.1302C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474991 | n.1334T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475271 | n.1614A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475273 | n.1616T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.13 |
inhA | 1674382 | p.Leu61Ile | missense_variant | 0.16 |
inhA | 1674480 | c.279T>C | synonymous_variant | 0.16 |
inhA | 1674486 | c.285T>C | synonymous_variant | 0.16 |
inhA | 1674489 | c.288G>C | synonymous_variant | 0.17 |
inhA | 1674498 | c.297G>A | synonymous_variant | 0.17 |
inhA | 1674507 | c.306G>C | synonymous_variant | 0.17 |
inhA | 1674537 | c.336C>G | synonymous_variant | 0.16 |
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.17 |
inhA | 1674549 | c.348G>C | synonymous_variant | 0.19 |
inhA | 1674555 | c.354G>A | synonymous_variant | 0.18 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.17 |
inhA | 1674564 | c.363C>T | synonymous_variant | 0.17 |
inhA | 1674582 | c.381T>C | synonymous_variant | 0.17 |
inhA | 1674585 | c.384T>C | synonymous_variant | 0.17 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.17 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.13 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.19 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.16 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.16 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.15 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.16 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.16 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.16 |
tlyA | 1918063 | p.Pro42Ala | missense_variant | 1.0 |
ndh | 2102985 | p.Ile20Val | missense_variant | 1.0 |
katG | 2155856 | p.Thr86Ser | missense_variant | 1.0 |
PPE35 | 2169233 | c.1379delT | frameshift_variant | 1.0 |
Rv2752c | 3065376 | c.815delT | frameshift_variant | 1.0 |
Rv2752c | 3066351 | c.-160G>T | upstream_gene_variant | 0.94 |
thyX | 3067376 | c.570G>C | synonymous_variant | 0.15 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.15 |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.15 |
thyX | 3067412 | c.534C>G | synonymous_variant | 0.15 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.15 |
thyX | 3067500 | p.Lys149Arg | missense_variant | 0.14 |
thyX | 3067571 | c.375C>T | synonymous_variant | 0.14 |
thyX | 3067577 | p.Glu123Asp | missense_variant | 0.14 |
thyX | 3067586 | c.360C>G | synonymous_variant | 0.14 |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.12 |
thyX | 3067731 | p.Val72Ala | missense_variant | 0.94 |
thyX | 3067825 | p.Arg41Gly | missense_variant | 1.0 |
thyA | 3073878 | c.594G>A | synonymous_variant | 0.16 |
thyA | 3073892 | c.580T>C | synonymous_variant | 0.17 |
thyA | 3073893 | c.579C>G | synonymous_variant | 0.17 |
thyA | 3073926 | c.546G>C | synonymous_variant | 0.18 |
thyA | 3073929 | c.543T>C | synonymous_variant | 0.18 |
thyA | 3073953 | c.519T>C | synonymous_variant | 0.24 |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.19 |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.19 |
thyA | 3074001 | c.471C>G | synonymous_variant | 0.18 |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.18 |
thyA | 3074010 | c.462C>G | synonymous_variant | 0.18 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.17 |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.17 |
thyA | 3074056 | p.Glu139Pro | missense_variant | 0.16 |
thyA | 3074076 | c.396C>G | synonymous_variant | 0.17 |
thyA | 3074097 | c.375C>G | synonymous_variant | 0.16 |
fbiD | 3338949 | c.-169_-168insT | upstream_gene_variant | 1.0 |
Rv3083 | 3448707 | c.204G>A | synonymous_variant | 1.0 |
Rv3083 | 3449768 | p.Thr422Lys | missense_variant | 1.0 |
fbiB | 3641403 | c.-132C>T | upstream_gene_variant | 1.0 |
alr | 3841257 | p.His55Leu | missense_variant | 1.0 |
rpoA | 3877601 | p.Gln303* | stop_gained | 0.96 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.22 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.19 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.19 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.19 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.19 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.23 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.24 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.22 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.17 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.14 |
rpoA | 3877899 | p.Ser203Thr | missense_variant | 0.16 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.18 |
rpoA | 3877908 | p.Asn200Ser | missense_variant | 0.19 |
rpoA | 3877953 | c.555G>A | synonymous_variant | 0.13 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.13 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.14 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.13 |
ddn | 3986668 | c.-176T>C | upstream_gene_variant | 1.0 |
clpC1 | 4038310 | p.Val799Met | missense_variant | 0.12 |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.16 |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.14 |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.14 |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.15 |
clpC1 | 4038701 | c.2004G>C | synonymous_variant | 0.18 |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.18 |
clpC1 | 4038707 | c.1998C>G | synonymous_variant | 0.18 |
clpC1 | 4038710 | c.1995G>C | synonymous_variant | 0.18 |
clpC1 | 4038851 | c.1854G>A | synonymous_variant | 0.13 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.13 |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.16 |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.16 |
embC | 4241864 | p.Leu668Met | missense_variant | 1.0 |
embB | 4245557 | c.-957G>A | upstream_gene_variant | 1.0 |
ethA | 4327092 | p.Ala128Pro | missense_variant | 1.0 |
gid | 4408151 | p.Leu18Val | missense_variant | 1.0 |