Rv0006 - c.1494C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
4 RR-TB
11 HR-TB
80 MDR-TB
20 Pre-XDR-TB
3 XDR-TB
14 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 132 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| lineage2.2.1;lineage4.3.4.2.1 | 1 |
| lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage2;lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage3;lineage4.3.4.2.1 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.2;lineage4.3.4.2.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage1.1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 165 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR2199989 | HR-TB | lineage4.3.4.2.1 | sz | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR19428566 | Sensitive | lineage4.3.4.2.1 | None | ERR9992705 | XDR-TB | lineage4.3.4.2.1 | None | ERR11488917 | MDR-TB | lineage4.3.4.2.1 | None | ERR552992 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488856 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488882 | MDR-TB | lineage4.3.4.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3509849 | HR-TB | lineage4.3.4.2.1 | None | ERR11488758 | MDR-TB | lineage4.3.4.2.1 | None | ERR9992657 | XDR-TB | lineage4.3.4.2.1 | None | ERR11488706 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR3509858 | MDR-TB | lineage2.2.1;lineage4.3.4.2.1 | None | ERR161038 | Sensitive | lineage4.3.4.2.1 | mw | ERR11488911 | MDR-TB | lineage4.3.4.2.1 | None | ERR495193 | Sensitive | lineage4.3.4.2.1 | None | ERR11488565 | MDR-TB | lineage4.3.4.2.1 | None | ERR279549 | Sensitive | lineage4.3.4.2.1 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR11488538 | MDR-TB | lineage4.3.4.2.1 | None | SRR1723570 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11488488 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488373 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488962 | MDR-TB | lineage4.3.4.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR29055929 | Sensitive | lineage4.3.4.2.1 | None | ERR11488383 | MDR-TB | lineage4.3.4.2.1 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR11488994 | MDR-TB | lineage4.3.4.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR11488400 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509866 | HR-TB | lineage4.3.4.2.1 | None | ERR11488620 | MDR-TB | lineage4.3.4.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR495080 | Sensitive | lineage4.3.4.2.1 | None | ERR161194 | Sensitive | lineage2;lineage4.3.4.2.1 | mw | ERR11488779 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509850 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489062 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489028 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488566 | MDR-TB | lineage4.3.4.2.1 | None | ERR4808930 | Sensitive | lineage4.3.4.2.1 | za | ERR11489038 | MDR-TB | lineage4.3.4.2.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR8975185 | Sensitive | lineage4.3.4.2.1 | None | ERR8975946 | MDR-TB | lineage4.3.4.2.1 | None | ERR8975139 | Sensitive | lineage4.3.4.2.1 | None | SRR2101151 | Sensitive | lineage3;lineage4.3.4.2.1 | None | ERR1193891 | HR-TB | lineage4.3.4.2.1 | sz | ERR1193892 | MDR-TB | lineage4.3.4.2.1 | sz | ERR2433003 | MDR-TB | lineage4.3.4.2.1 | br | ERR2433006 | HR-TB | lineage4.3.4.2.1 | br | ERR2515483 | Sensitive | lineage4.3.4.2.1 | za | ERR11488931 | XDR-TB | lineage4.3.4.2.1 | None | ERR11488996 | MDR-TB | lineage4.3.4.2.1 | None | ERR176624 | Sensitive | lineage4.3.4.2.1 | mw | ERR11466345 | Sensitive | lineage4.3.4.2.1 | None | ERR11488335 | Other | lineage4.3.4.2.1 | None | ERR11488655 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488515 | MDR-TB | lineage4.3.4.2.1 | None | ERR2433013 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR2433011 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488555 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488768 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR11488443 | MDR-TB | lineage4.3.2;lineage4.3.4.2.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR473339 | Sensitive | lineage4.3.4.2.1 | None | SRR10306027 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488837 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488995 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488411 | MDR-TB | lineage4.3.4.2.1 | None | SRR29055637 | Sensitive | lineage4.3.4.2.1 | None | ERR11488724 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488728 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR7821142 | Other | lineage4.3.4.2.1 | None | ERR11488496 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509857 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488450 | MDR-TB | lineage4.3.4.2.1 | None | SRR6981920 | Sensitive | lineage4.3.4.2.1 | None | ERR11488807 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488772 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489063 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR21732383 | Sensitive | lineage4.3.4.2.1 | None | ERR3509865 | HR-TB | lineage4.3.4.2.1 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR11488978 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488691 | MDR-TB | lineage4.3.4.2.1 | None | ERR275201 | HR-TB | lineage4.3.4.2.1 | pt | SRR2101604 | Sensitive | lineage4.3.4.2.1 | None | ERR11488635 | MDR-TB | lineage4.3.4.2.1 | None | ERR2433007 | MDR-TB | lineage4.3.4.2.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR279512 | Sensitive | lineage4.3.4.2.1 | None | ERR11488554 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488845 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488334 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488340 | MDR-TB | lineage4.3.4.2.1 | None | SRR6982302 | Sensitive | lineage4.3.4.2.1 | None | SRR27450124 | HR-TB | lineage1.1.1.1 | None | ERR11252494 | MDR-TB | lineage4.3.4.2.1 | None | ERR2433004 | HR-TB | lineage4.3.4.2.1 | None | SRR6982245 | Sensitive | lineage4.3.4.2.1 | None | ERR11488709 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR8975404 | Sensitive | lineage4.3.4.2.1 | None | ERR8975694 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR2101758 | Sensitive | lineage4.3.4.2.1 | None | SRR6824532 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1035213 | HR-TB | lineage4.3.4.2.1 | pt | ERR182007 | Sensitive | lineage4.3.4.2.1 | mw | ERR11488575 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR3509862 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489037 | MDR-TB | lineage4.3.4.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR11488676 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488782 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488776 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488746 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR552990 | MDR-TB | lineage4.3.4.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR11488553 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR2515266 | RR-TB | lineage4.3.4.2.1 | za | ERR11488370 | MDR-TB | lineage4.3.4.2.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR11488562 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488834 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488749 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488474 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488544 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488684 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488500 | MDR-TB | lineage4.3.4.2.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR161027 | Sensitive | lineage4.3.4.2.1 | mw | ERR3509860 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR1633855 | Sensitive | lineage4.3.4.2.1 | za | ERR330713 | Sensitive | lineage3;lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR552991 | MDR-TB | lineage4.3.4.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR11488512 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488523 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488773 | MDR-TB | lineage4.3.4.2.1 | None | ERR2433009 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488408 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488671 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488532 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488440 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488549 | MDR-TB | lineage4.3.4.2.1 | None | ERR11252568 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488737 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR11488452 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488449 | MDR-TB | lineage4.3.4.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR161193 | Sensitive | lineage4.3.4.2.1 | mw | ERR3509864 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509859 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR11488643 | MDR-TB | lineage4.3.4.2.1 | None | SRR29093500 | Sensitive | lineage4.3.4.2.1 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6855895 | Sensitive | lineage4.3.4.2.1 | None |
|---|
