| lineage | Count |
|---|---|
| lineage4.4.1.1 | 194 |
| lineage4.3.3 | 57 |
| lineage4.9 | 39 |
| lineage4.4.1.1.1 | 15 |
| lineage4.4.1 | 1 |
| lineage4.1.1.3.1 | 86 |
| lineage2.2.1 | 72 |
| lineage1.1.2 | 13 |
| 1 | |
| lineage4.1.1 | 17 |
| lineage3 | 17 |
| lineage1.2.2.2 | 14 |
| lineage4.3.2.1 | 8 |
| lineage4.1.2.1 | 35 |
| lineage4.8 | 11 |
| lineage4.3.4.2 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.1.3 | 13 |
| lineage3.1.2 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.1.1.3.1;lineage4.8.2 | 2 |
| lineage4.1.2 | 2 |
| lineage3.1.2.1 | 4 |
| lineage1.1.3.1 | 2 |
| lineage4.2.2 | 2 |
| lineage3.1 | 1 |
| lineage4.3.4.1 | 4 |
| lineage2.2.2 | 17 |
| lineage2.2.1.1 | 9 |
| lineage1.1.2;lineage2.2.1;lineage3 | 1 |
| lineage2.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.5 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.3.2 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.3.4.2.1;lineage4.4.1.1 | 1 |
| lineage1.2.2.2;lineage4.3.3 | 1 |
| lineage1.2.1.2 | 1 |
| lineage2.1 | 1 |
| spoligotype | Count |
|---|---|
| None | 658 |
| ID | Drug resistance | Lineage | Country iso2 | ERR11488884 | XDR-TB | lineage4.4.1.1 | None | SRR9971250 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488969 | XDR-TB | lineage4.4.1.1 | None | ERR2497906 | MDR-TB | lineage4.9 | None | SRR9971042 | XDR-TB | lineage4.4.1.1.1 | None | ERR4813819 | Pre-XDR-TB | lineage4.4.1 | None | ERR2497875 | RR-TB | lineage4.9 | None | ERR11488763 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR270766 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR9971126 | Pre-XDR-TB | lineage4.3.3 | None | ERR2497887 | MDR-TB | lineage4.9 | None | ERR13291008 | MDR-TB | lineage2.2.1 | None | SRR19295646 | MDR-TB | lineage1.1.2 | None | ERR13260900 | XDR-TB | lineage4.4.1.1 | None | SRR26159062 | MDR-TB | None | ERR11488382 | MDR-TB | lineage4.4.1.1 | None | ERR13260890 | MDR-TB | lineage4.3.3 | None | SRR29341511 | MDR-TB | lineage4.4.1.1 | None | SAMEA2534740 | MDR-TB | lineage4.4.1.1 | None | ERR270794 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR386895 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR1180488 | MDR-TB | lineage1.1.2 | None | ERR2497891 | MDR-TB | lineage4.9 | None | SRR14802234 | Pre-XDR-TB | lineage2.2.1 | None | SRR10185952 | MDR-TB | lineage2.2.1 | None | SRR21798279 | MDR-TB | lineage2.2.1 | None | ERR4816181 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR5865504 | MDR-TB | lineage2.2.1 | None | ERR4020183 | MDR-TB | lineage4.4.1.1 | None | ERR4830858 | MDR-TB | lineage4.4.1.1 | None | ERR10748457 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR26159067 | MDR-TB | lineage2.2.1 | None | SRR1181262 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180422 | Pre-XDR-TB | lineage4.3.3 | None | ERR2497883 | RR-TB | lineage4.9 | None | ERR13260667 | Pre-XDR-TB | lineage4.1.1 | None | SRR29289332 | Pre-XDR-TB | lineage3 | None | SRR19325547 | RR-TB | lineage4.1.1 | None | SRR13232714 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289205 | MDR-TB | lineage1.2.2.2 | None | SRR21798280 | MDR-TB | lineage2.2.1 | None | SRR6964492 | MDR-TB | lineage1.1.2 | None | SRR29096563 | MDR-TB | lineage4.3.2.1 | None | ERR2099791 | MDR-TB | lineage4.1.2.1 | es | ERR2099787 | RR-TB | lineage4.1.2.1 | es | SAMEA104221066 | MDR-TB | lineage4.1.2.1 | es | ERR2099785 | MDR-TB | lineage4.1.2.1 | es | ERR2099786 | MDR-TB | lineage4.1.2.1 | es | ERR2099776 | MDR-TB | lineage4.1.2.1 | es | ERR2099777 | MDR-TB | lineage4.1.2.1 | es | SRR9971242 | XDR-TB | lineage4.4.1.1.1 | None | ERR2099775 | RR-TB | lineage4.1.2.1 | es | ERR2099783 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR2099782 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR13285134 | MDR-TB | lineage4.8 | None | SRR30340072 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR294247 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR3077985 | MDR-TB | lineage3.1.1 | None | ERR4797319 | MDR-TB | lineage1.1.2 | in | SRR29094458 | RR-TB | lineage4.8 | None | ERR4799897 | MDR-TB | lineage3 | in | SRR29055959 | Pre-XDR-TB | lineage4.3.3 | None | ERR4797916 | Pre-XDR-TB | lineage3 | in | ERR13290827 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797962 | XDR-TB | lineage4.1.1.3 | in | ERR11488405 | MDR-TB | lineage4.4.1.1 | None | ERR13266744 | Pre-XDR-TB | lineage3.1.2 | None | ERR4553536 | MDR-TB | lineage2.2.1 | None | ERR4800565 | Pre-XDR-TB | lineage3.1.2 | in | SRR26159036 | RR-TB | lineage1.2.2.2 | None | ERR8774131 | MDR-TB | lineage4.3.2.1 | None | SRR22424876 | MDR-TB | lineage4.3.3 | None | ERR228132 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488791 | MDR-TB | lineage4.4.1.1 | None | SRR1183101 | Pre-XDR-TB | lineage4.3.3 | None | SRR29231316 | MDR-TB | lineage4.9 | None | ERR2497878 | MDR-TB | lineage4.9 | None | ERR2497882 | RR-TB | lineage4.9 | None | ERR2707155 | MDR-TB | lineage4.9 | cd | ERR2497889 | MDR-TB | lineage4.9 | None | ERR551757 | MDR-TB | lineage4.4.1.1 | None | ERR552254 | MDR-TB | lineage4.4.1.1 | None | ERR2184677 | MDR-TB | lineage4.1.1 | pe | ERR4810902 | RR-TB | lineage2.2.1 | None | ERR3287468 | MDR-TB | lineage4.1.2.1 | pe | SRR5153074 | MDR-TB | lineage2.2.1 | None | SRR6797272 | MDR-TB | lineage4.1.1.1 | None | SRR18213684 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR28044659 | MDR-TB | lineage2.2.1 | None | SRR28045001 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR228114 | Pre-XDR-TB | lineage4.1.1.3.1;lineage4.8.2 | None | ERR5865549 | MDR-TB | lineage2.2.1 | None | ERR2497899 | MDR-TB | lineage4.9 | None | ERR046784 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR28045025 | MDR-TB | lineage2.2.1 | None | ERR7911101 | MDR-TB | lineage2.2.1 | vn | ERR4813863 | MDR-TB | lineage4.3.3 | br | ERR5917988 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR4829486 | Pre-XDR-TB | lineage4.1.2 | it | ERR4810982 | Pre-XDR-TB | lineage2.2.1 | cn | ERR046794 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR038294 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR9588027 | MDR-TB | lineage4.4.1.1 | None | ERR8975000 | XDR-TB | lineage4.4.1.1.1 | None | ERR8975065 | MDR-TB | lineage4.4.1.1 | None | SRR1183967 | Pre-XDR-TB | lineage4.3.3 | None | SRR16089390 | RR-TB | lineage4.1.1 | None | SRR17856654 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR1180157 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180445 | Pre-XDR-TB | lineage4.3.3 | None | SRR9588017 | MDR-TB | lineage4.4.1.1 | None | SRR9588028 | MDR-TB | lineage4.4.1.1 | None | ERR2510203 | MDR-TB | lineage4.1.1 | pe | ERR4814380 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4814757 | MDR-TB | lineage4.4.1.1 | gb | ERR4818880 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4818967 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4819736 | Pre-XDR-TB | lineage3 | gb | ERR4819771 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4821985 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513160 | Pre-XDR-TB | lineage3 | gb | ERR2514947 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2515294 | MDR-TB | lineage4.1.1.3 | za | ERR9992988 | XDR-TB | lineage4.1.1.3 | None | ERR023198 | MDR-TB | lineage4.8 | None | SRR27241220 | MDR-TB | lineage2.2.1 | None | SAMN02350481 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02585964 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02585965 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02585978 | Pre-XDR-TB | lineage4.3.3 | za | ERR2884653 | RR-TB | lineage4.1.2.1 | None | SAMN02586063 | MDR-TB | lineage4.3.3 | za | SRR2469373 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR3055242 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488351 | MDR-TB | lineage4.9 | None | ERR2099784 | MDR-TB | lineage4.1.2.1 | None | SRR21798458 | MDR-TB | lineage2.2.1 | None | ERR13260898 | Pre-XDR-TB | lineage4.8 | None | ERR4553592 | MDR-TB | lineage1.1.3.1 | None | SRR1184337 | MDR-TB | lineage4.3.3 | None | SRR18213825 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4020188 | MDR-TB | lineage4.4.1.1 | None | ERR5866126 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291181 | RR-TB | lineage4.1.1 | None | SRR12420642 | MDR-TB | lineage2.2.1 | None | ERR552821 | MDR-TB | lineage4.4.1.1 | None | ERR7737826 | MDR-TB | lineage4.4.1.1 | None | SRR9588025 | MDR-TB | lineage4.4.1.1 | None | ERR11488623 | XDR-TB | lineage4.4.1.1 | None | SRR9588018 | MDR-TB | lineage4.4.1.1 | None | SRR18149499 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11488463 | MDR-TB | lineage4.4.1.1 | None | ERR13260931 | MDR-TB | lineage3 | None | SRR9588026 | MDR-TB | lineage4.4.1.1 | None | ERR2510616 | Pre-XDR-TB | lineage4.2.2 | pk | SRR29681329 | XDR-TB | lineage2.2.1 | None | ERR13266814 | MDR-TB | lineage3 | None | ERR11081610 | MDR-TB | lineage2.2.1 | None | SRR29016744 | MDR-TB | lineage2.2.1 | None | SRR14088352 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR2497885 | RR-TB | lineage4.9 | None | ERR2497876 | MDR-TB | lineage4.9 | None | ERR11488349 | MDR-TB | lineage4.9 | None | SRR29289374 | XDR-TB | lineage3 | None | SRR29289128 | MDR-TB | lineage3 | None | ERR2099781 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR2099788 | MDR-TB | lineage4.1.2.1 | es | ERR2099789 | MDR-TB | lineage4.1.2.1 | es | ERR2099790 | MDR-TB | lineage4.1.2.1 | es | ERR4797926 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR2099778 | RR-TB | lineage4.1.2.1 | es | ERR4797739 | Pre-XDR-TB | lineage3.1 | in | ERR4020186 | MDR-TB | lineage4.4.1.1 | None | ERR13260894 | Pre-XDR-TB | lineage4.3.3 | None | ERR4812160 | MDR-TB | lineage4.1.2.1 | pe | ERR117676 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488407 | MDR-TB | lineage4.4.1.1 | None | ERR552572 | MDR-TB | lineage4.4.1.1 | None | ERR2706940 | MDR-TB | lineage4.9 | cd | ERR13289558 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488889 | MDR-TB | lineage4.9 | None | ERR9993015 | MDR-TB | lineage4.3.3 | None | SRR29231821 | MDR-TB | lineage4.3.4.1 | None | SRR29231301 | MDR-TB | lineage4.9 | None | SAMN02599026 | MDR-TB | lineage1.1.2 | in | SAMN02403625 | Pre-XDR-TB | lineage4.4.1.1 | sz | ERR13191066 | MDR-TB | lineage2.2.2 | None | ERR13191077 | MDR-TB | lineage2.2.2 | None | ERR12796605 | MDR-TB | lineage4.4.1.1 | None | SRR28045691 | XDR-TB | lineage4.1.1.3 | None | ERR3287712 | Pre-XDR-TB | lineage4.1.1 | pe | SRR1181172 | Pre-XDR-TB | lineage4.3.3 | None | SRR28044666 | XDR-TB | lineage2.2.1 | None | ERR046789 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046786 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046785 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046788 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4828736 | MDR-TB | lineage2.2.1 | None | ERR046792 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR7911279 | MDR-TB | lineage2.2.1 | vn | ERR4811085 | MDR-TB | lineage2.2.1 | cn | ERR7361993 | Pre-XDR-TB | lineage4.3.3 | None | ERR038295 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR9971248 | MDR-TB | lineage2.2.1 | None | ERR038296 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2706982 | MDR-TB | lineage4.3.4.1 | cd | ERR4812743 | MDR-TB | lineage4.1.1 | pe | ERR2707233 | MDR-TB | lineage4.3.4.1 | cd | ERR4830879 | MDR-TB | lineage4.4.1.1 | sz | ERR4830866 | MDR-TB | lineage4.4.1.1 | sz | ERR775314 | RR-TB | lineage4.1.1.3 | pe | ERR779907 | MDR-TB | lineage4.3.3 | pe | ERR4830849 | MDR-TB | lineage4.4.1.1 | sz | SRR6785168 | MDR-TB | lineage2.2.1 | None | SRR7070077 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR9588012 | MDR-TB | lineage4.4.1.1 | None | SRR9588022 | MDR-TB | lineage4.4.1.1 | None | SRR9971235 | XDR-TB | lineage4.4.1.1.1 | None | ERR8976107 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8975695 | Pre-XDR-TB | lineage4.3.3 | None | SRR2099972 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100389 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100826 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100867 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100893 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100923 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2101261 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR2516816 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2516831 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2516437 | MDR-TB | lineage4.1.2.1 | pe | ERR2516665 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4817206 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4817221 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4817291 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4818346 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4821423 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513859 | Pre-XDR-TB | lineage4.1.1.3.1;lineage4.8.2 | gb | ERR2514982 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513944 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2514666 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513957 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513631 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2514424 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4822260 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR6046819 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR552491 | MDR-TB | lineage4.4.1.1 | sz | ERR551969 | MDR-TB | lineage4.4.1.1 | sz | ERR551195 | MDR-TB | lineage4.4.1.1 | sz | ERR553357 | MDR-TB | lineage4.4.1.1 | sz | ERR552754 | MDR-TB | lineage4.4.1.1 | sz | ERR552765 | MDR-TB | lineage4.4.1.1 | sz | ERR552083 | MDR-TB | lineage4.4.1.1 | sz | ERR552612 | MDR-TB | lineage4.4.1.1 | sz | ERR552822 | MDR-TB | lineage4.4.1.1 | sz | ERR552405 | MDR-TB | lineage4.4.1.1 | sz | ERR550861 | MDR-TB | lineage4.4.1.1 | sz | ERR552672 | MDR-TB | lineage4.4.1.1 | sz | ERR551536 | MDR-TB | lineage4.4.1.1 | sz | ERR551280 | MDR-TB | lineage4.4.1.1 | sz | ERR551758 | MDR-TB | lineage4.4.1.1 | sz | ERR552124 | MDR-TB | lineage4.4.1.1 | sz | ERR552870 | MDR-TB | lineage4.4.1.1 | sz | ERR552487 | MDR-TB | lineage4.4.1.1 | sz | ERR552193 | MDR-TB | lineage4.4.1.1 | sz | ERR553221 | MDR-TB | lineage4.4.1.1 | sz | ERR553230 | MDR-TB | lineage4.4.1.1 | sz | ERR550741 | MDR-TB | lineage4.4.1.1 | sz | ERR552150 | MDR-TB | lineage4.4.1.1 | sz | ERR551488 | MDR-TB | lineage4.4.1.1 | sz | ERR552987 | MDR-TB | lineage4.4.1.1 | sz | ERR552823 | MDR-TB | lineage4.4.1.1 | sz | ERR553242 | MDR-TB | lineage4.4.1.1 | sz | ERR551014 | MDR-TB | lineage4.4.1.1 | sz | ERR552745 | MDR-TB | lineage4.4.1.1 | sz | ERR551609 | MDR-TB | lineage4.4.1.1 | sz | ERR552540 | MDR-TB | lineage4.4.1.1 | sz | ERR552077 | MDR-TB | lineage4.4.1.1 | sz | ERR11488941 | XDR-TB | lineage4.4.1.1 | None | ERR11488380 | XDR-TB | lineage4.4.1.1 | None | SRR24827278 | RR-TB | lineage4.1.1 | None | SRR9588005 | MDR-TB | lineage4.4.1.1 | None | ERR13259975 | MDR-TB | lineage2.2.1.1 | None | SAMN02585973 | Pre-XDR-TB | lineage4.3.3 | za | ERR270682 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR278536 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SAMEA2534447 | MDR-TB | lineage4.4.1.1 | None | ERR2497901 | MDR-TB | lineage4.9 | None | SRR21732072 | RR-TB | lineage2.2.1.1 | None | SRR9588020 | MDR-TB | lineage4.4.1.1 | None | ERR4830851 | MDR-TB | lineage4.4.1.1 | None | ERR552149 | MDR-TB | lineage4.4.1.1 | None | SRR29017403 | MDR-TB | lineage1.2.2.2 | None | SRR25827597 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR1723523 | MDR-TB | lineage2.2.1 | None | SRR6785289 | MDR-TB | lineage2.2.1 | None | ERR1213896 | MDR-TB | lineage4.1.2.1 | pe | ERR351924 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SAMEA2535221 | MDR-TB | lineage4.4.1.1 | None | ERR13289514 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR10748129 | MDR-TB | lineage4.1.1.3 | None | SRR14801568 | Pre-XDR-TB | lineage2.2.1 | None | SRR9588024 | MDR-TB | lineage4.4.1.1 | None | ERR9992661 | MDR-TB | lineage4.3.3 | None | SRR9588019 | MDR-TB | lineage4.4.1.1 | None | SRR24256303 | Pre-XDR-TB | lineage2.2.1 | None | ERR552119 | MDR-TB | lineage4.4.1.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR26936940 | MDR-TB | lineage2.2.1 | None | ERR552573 | MDR-TB | lineage4.4.1.1 | None | ERR4830520 | MDR-TB | lineage2.2.1 | None | ERR11488616 | MDR-TB | lineage4.4.1.1 | None | SRR29017599 | MDR-TB | lineage1.1.3.1 | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR9992916 | XDR-TB | lineage4.4.1.1 | None | ERR4830555 | XDR-TB | lineage4.4.1.1.1 | None | SRR29289365 | Pre-XDR-TB | lineage3 | None | SRR9588008 | MDR-TB | lineage4.4.1.1 | None | SRR11662616 | MDR-TB | lineage2.2.1 | None | SRR9588014 | MDR-TB | lineage4.4.1.1 | None | SRR9588003 | MDR-TB | lineage4.4.1.1 | None | SRR19318144 | RR-TB | lineage4.1.1 | None | SRR25827357 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3 | None | ERR11488958 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR2497886 | MDR-TB | lineage4.9 | None | SRR6964623 | Pre-XDR-TB | lineage3 | None | ERR4020189 | MDR-TB | lineage4.4.1.1 | None | SRR22873596 | Pre-XDR-TB | lineage2.2.2 | None | ERR13291096 | MDR-TB | lineage2.2.2 | None | ERR4796615 | MDR-TB | lineage1.2.2.2 | in | SRR29231854 | MDR-TB | lineage4.3.4.1 | None | SRR14088389 | MDR-TB | lineage3 | None | ERR553222 | MDR-TB | lineage4.4.1.1 | None | ERR4797117 | RR-TB | lineage1.2.2.2 | in | ERR13260872 | MDR-TB | lineage4.3.3 | None | ERR4796641 | MDR-TB | lineage3.1.2.1 | in | ERR6052040 | MDR-TB | lineage4.3.2.1 | None | SRR1019143 | Pre-XDR-TB | lineage4.3.3 | None | ERR552118 | MDR-TB | lineage4.4.1.1 | None | ERR4831097 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799775 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR29231550 | MDR-TB | lineage4.9 | None | ERR13288835 | MDR-TB | lineage4.4.1.1 | None | ERR11488350 | MDR-TB | lineage4.9 | None | ERR552986 | MDR-TB | lineage4.4.1.1 | None | ERR2707006 | MDR-TB | lineage4.9 | cd | ERR10748162 | Pre-XDR-TB | lineage4.9 | None | ERR2497898 | MDR-TB | lineage4.9 | None | SRR29017126 | MDR-TB | lineage1.2.2.2 | None | ERR11488836 | MDR-TB | lineage4.4.1.1 | None | SRR6824408 | MDR-TB | lineage2.2.1 | cn | ERR4819741 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR023197 | MDR-TB | lineage4.8 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | SRR1049005 | RR-TB | lineage2.2.2 | None | SAMN03246362 | RR-TB | lineage2.2.1 | cn | SRR28385876 | Pre-XDR-TB | lineage2.2.2 | None | SRR28385882 | MDR-TB | lineage2.2.2 | None | SRR28385881 | MDR-TB | lineage2.2.2 | None | SRR28393539 | MDR-TB | lineage4.1.2.1 | None | SRR28393564 | MDR-TB | lineage4.1.2.1 | None | SRR9588029 | MDR-TB | lineage4.4.1.1 | None | ERR4830863 | MDR-TB | lineage4.4.1.1 | sz | ERR4830865 | MDR-TB | lineage4.3.3 | sz | ERR4830878 | MDR-TB | lineage4.4.1.1 | sz | ERR751410 | MDR-TB | lineage4.1.1 | pe | ERR551194 | MDR-TB | lineage4.4.1.1 | None | SAMEA2534689 | MDR-TB | lineage4.4.1.1 | None | SAMEA2535241 | MDR-TB | lineage4.4.1.1 | None | ERR11773791 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830861 | MDR-TB | lineage4.4.1.1 | sz | ERR046795 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046800 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4811278 | RR-TB | lineage2.2.1 | cn | ERR4830560 | XDR-TB | lineage4.4.1.1.1 | None | ERR4830852 | MDR-TB | lineage4.4.1.1 | sz | ERR4830862 | MDR-TB | lineage4.4.1.1 | sz | ERR4830859 | MDR-TB | lineage4.4.1.1 | sz | ERR4830868 | MDR-TB | lineage4.4.1.1 | sz | ERR4830872 | MDR-TB | lineage4.4.1.1 | sz | ERR4830870 | MDR-TB | lineage4.4.1.1 | sz | ERR4830871 | MDR-TB | lineage2.2.1.1 | sz | ERR4830874 | MDR-TB | lineage4.4.1.1 | sz | ERR4830875 | MDR-TB | lineage4.4.1.1 | sz | ERR046911 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046913 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR751413 | MDR-TB | lineage4.1.1 | pe | ERR4830850 | MDR-TB | lineage4.4.1.1 | sz | ERR4830853 | MDR-TB | lineage4.4.1.1 | sz | ERR4830857 | MDR-TB | lineage4.4.1.1 | sz | ERR4830860 | MDR-TB | lineage4.4.1.1 | sz | ERR4830864 | MDR-TB | lineage4.4.1.1 | sz | ERR4830876 | MDR-TB | lineage4.4.1.1 | sz | ERR4830877 | MDR-TB | lineage4.4.1.1 | sz | ERR4830873 | MDR-TB | lineage4.4.1.1 | sz | ERR8975639 | MDR-TB | lineage4.4.1.1 | None | ERR8975646 | MDR-TB | lineage4.1.1.3 | None | ERR8975655 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR8975692 | MDR-TB | lineage4.4.1.1 | None | ERR8975801 | Pre-XDR-TB | lineage2.2.1.1;lineage4.3.3 | None | ERR8975683 | RR-TB | lineage4.4.1.1.1 | None | SRR9588013 | MDR-TB | lineage4.4.1.1 | None | SRR9588021 | MDR-TB | lineage4.4.1.1 | None | SRR28393642 | MDR-TB | lineage4.1.2.1 | None | ERR386878 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4553714 | MDR-TB | lineage4.8 | None | SRR2100239 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2100283 | MDR-TB | lineage4.3.3 | None | SRR2100721 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR2101039 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR552496 | MDR-TB | lineage4.4.1.1 | sz | ERR552637 | MDR-TB | lineage4.4.1.1 | sz | ERR552070 | MDR-TB | lineage4.4.1.1 | sz | ERR552484 | MDR-TB | lineage4.4.1.1 | sz | SRR6824346 | MDR-TB | lineage2.2.2 | cn | SRR6824582 | MDR-TB | lineage2.2.2 | cn | SRR6824450 | RR-TB | lineage2.2.1 | cn | SRR17856673 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29231451 | RR-TB | lineage3 | None | SRR9971193 | XDR-TB | lineage4.4.1.1.1 | None | ERR2199748 | MDR-TB | lineage4.4.1.1 | None | ERR11488401 | MDR-TB | lineage4.4.1.1 | None | SRR26159044 | MDR-TB | lineage1.1.2 | None | SRR11348154 | RR-TB | lineage1.1.2 | None | ERR046787 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046790 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046793 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR038297 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR11043052 | MDR-TB | lineage2.2.1;lineage4 | None | SRR22461579 | MDR-TB | lineage4.1.1 | None | ERR552253 | MDR-TB | lineage4.4.1.1 | None | ERR11488657 | XDR-TB | lineage4.4.1.1 | None | ERR5865505 | MDR-TB | lineage2.2.1 | None | ERR6866606 | MDR-TB | lineage4.1.1 | None | SRR28393312 | Pre-XDR-TB | lineage2.2.1 | None | SRR20139562 | RR-TB | lineage4.8 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR1180998 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1181108 | Pre-XDR-TB | lineage4.3.3 | None | SRR3105802 | Pre-XDR-TB | lineage3 | None | ERR4821850 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4830854 | MDR-TB | lineage4.4.1.1 | None | ERR4830869 | MDR-TB | lineage4.4.1.1 | None | ERR11488765 | XDR-TB | lineage4.4.1.1 | None | ERR13276352 | MDR-TB | lineage1.2.2.2 | None | ERR13290975 | MDR-TB | lineage2.2.2 | None | SRR1723621 | RR-TB | lineage2.2.1 | None | ERR11488859 | MDR-TB | lineage2.2.1 | None | ERR4553584 | MDR-TB | lineage1.2.2.2 | None | ERR11465836 | MDR-TB | lineage4.3.3 | None | ERR11488470 | MDR-TB | lineage4.4.1.1 | None | ERR9992909 | XDR-TB | lineage4.4.1.1 | None | ERR11488353 | XDR-TB | lineage4.4.1.1 | None | ERR552876 | MDR-TB | lineage4.4.1.1 | None | ERR9993075 | XDR-TB | lineage2.2.1 | None | ERR9993035 | MDR-TB | lineage4.4.1.1 | None | ERR13260901 | XDR-TB | lineage4.4.1.1 | None | ERR13286105 | MDR-TB | lineage1.1.3.2 | None | ERR4553862 | RR-TB | lineage1.2.2.2 | None | SRR1180429 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02053804 | MDR-TB | lineage4.3.3 | za | ERR4816876 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR9992651 | MDR-TB | lineage4.3.3 | None | ERR4553501 | MDR-TB | lineage1.2.2.2 | None | SRR1723524 | MDR-TB | lineage2.2.1 | None | SRR1180281 | Pre-XDR-TB | lineage4.3.3 | None | SRR19295645 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10397141 | MDR-TB | lineage2.2.1 | None | ERR4423541 | MDR-TB | lineage4.3.2.1 | None | ERR2497874 | RR-TB | lineage4.9 | None | SRR12420405 | MDR-TB | lineage2.2.1 | None | ERR8774352 | MDR-TB | lineage2.2.1 | None | SRR13232711 | Pre-XDR-TB | lineage2.2.1 | None | ERR2497880 | RR-TB | lineage4.9 | None | SRR7069358 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR9588007 | MDR-TB | lineage4.4.1.1 | None | ERR9027252 | MDR-TB | lineage4.4.1.1 | None | ERR4020187 | MDR-TB | lineage4.4.1.1 | None | SAMEA2534974 | MDR-TB | lineage4.4.1.1 | None | ERR2497884 | RR-TB | lineage4.9 | None | ERR11488900 | XDR-TB | lineage4.4.1.1 | None | ERR9121553 | MDR-TB | lineage4.1.2.1 | None | SRR25207235 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043528 | MDR-TB | lineage4.8 | None | ERR4423542 | MDR-TB | lineage4.3.2.1 | None | SRR25207150 | Pre-XDR-TB | lineage4.5 | None | ERR4821219 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488402 | MDR-TB | lineage2.2.1 | None | SRR25827513 | XDR-TB | lineage2.2.1;lineage3 | None | ERR11488824 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1172157 | MDR-TB | lineage1.1.2 | None | ERR6866737 | RR-TB | lineage4.3.2 | None | SRR29016883 | MDR-TB | lineage1.2.2.2 | None | SRR29056138 | MDR-TB | lineage4.4.1.1 | None | SRR1181145 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055698 | Pre-XDR-TB | lineage4.3.3 | None | SRR29017637 | MDR-TB | lineage4.8 | None | ERR2497872 | RR-TB | lineage4.9 | None | SRR21576586 | MDR-TB | lineage2.2.1 | None | ERR5865548 | MDR-TB | lineage2.2.1 | None | ERR5758473 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4813839 | Pre-XDR-TB | lineage4.1.2 | None | ERR11488890 | XDR-TB | lineage4.4.1.1 | None | ERR13260876 | MDR-TB | lineage4.3.3 | None | ERR11488896 | MDR-TB | lineage4.4.1.1 | None | SRR1140949 | Pre-XDR-TB | lineage4.3.3 | None | SRR10040391 | MDR-TB | lineage4.2.2 | None | ERR13284693 | MDR-TB | lineage2.2.1;lineage4 | None | ERR1035073 | Pre-XDR-TB | lineage2.2.1.1 | za | SRR29440742 | MDR-TB | lineage1.1.2 | None | SRR29231412 | RR-TB | lineage1.1.2 | None | SRR26159037 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2497903 | MDR-TB | lineage4.9 | None | SRR29053245 | RR-TB | lineage4.1.1 | None | ERR13260873 | MDR-TB | lineage4.4.1.1.1 | None | ERR13260498 | XDR-TB | lineage4.4.1.1.1 | None | ERR9993022 | XDR-TB | lineage4.4.1.1 | None | SRR1180266 | MDR-TB | lineage1.1.2 | None | ERR11489006 | MDR-TB | lineage4.4.1.1 | None | ERR11488858 | MDR-TB | lineage2.2.1 | None | SRR1172916 | RR-TB | lineage4.3.3;lineage4.9 | None | SRR9971241 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830855 | MDR-TB | lineage4.4.1.1 | None | SRR11662200 | MDR-TB | lineage1.1.1 | None | SAMEA2534888 | MDR-TB | lineage4.4.1.1 | None | ERR11488389 | MDR-TB | lineage4.4.1.1 | None | SRR28044765 | Pre-XDR-TB | lineage2.2.1 | None | ERR2200094 | MDR-TB | lineage4.4.1.1 | None | SRR11662607 | MDR-TB | lineage2.2.1 | None | ERR11488670 | MDR-TB | lineage4.4.1.1 | None | SRR833196 | MDR-TB | lineage4.3.3 | None | SRR1175055 | MDR-TB | lineage4.3.3 | None | SRR7070346 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR9992968 | XDR-TB | lineage4.4.1.1 | None | SRR29056162 | Pre-XDR-TB | lineage4.3.3 | None | ERR278519 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR13288944 | XDR-TB | lineage4.4.1.1.1 | None | ERR4812268 | MDR-TB | lineage4.3.3 | None | ERR9993245 | MDR-TB | lineage2.2.1 | None | SRR26159056 | MDR-TB | lineage4.9 | None | ERR13289033 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180353 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827749 | XDR-TB | lineage2.2.1;lineage3;lineage4 | None | SRR833100 | MDR-TB | lineage4.3.3 | None | ERR13289023 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4829131 | Pre-XDR-TB | lineage3 | pk | ERR4829130 | Pre-XDR-TB | lineage1.2.2.2 | pk | ERR4830867 | MDR-TB | lineage4.4.1.1 | sz | SRR9588004 | MDR-TB | lineage4.4.1.1 | None | ERR551970 | MDR-TB | lineage4.4.1.1 | None | ERR2497879 | MDR-TB | lineage4.9 | None | ERR2200022 | MDR-TB | lineage4.4.1.1 | None | ERR230097 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR1035011 | MDR-TB | lineage4.3.2.1 | za | SRR9588016 | MDR-TB | lineage4.4.1.1 | None | ERR4020182 | MDR-TB | lineage4.3.4.2.1;lineage4.4.1.1 | None | SRR9588006 | MDR-TB | lineage4.4.1.1 | None | SAMEA2534323 | MDR-TB | lineage4.4.1.1 | None | SRR9588009 | MDR-TB | lineage4.4.1.1 | None | SRR9971044 | XDR-TB | lineage4.4.1.1.1 | None | ERR8665770 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR1169491 | MDR-TB | lineage1.1.2 | None | SRR25827488 | MDR-TB | lineage1.2.2.2;lineage4.3.3 | None | ERR386856 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR552764 | MDR-TB | lineage4.4.1.1 | None | SRR14807572 | MDR-TB | lineage2.2.1 | None | ERR8975913 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR6930927 | MDR-TB | lineage1.2.1.2 | None | SRR24256170 | MDR-TB | lineage2.2.1 | None | ERR387052 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR552488 | MDR-TB | lineage4.4.1.1 | None | DRR130205 | RR-TB | lineage2.2.1.1 | None | ERR11488997 | MDR-TB | lineage4.4.1.1 | None | ERR13284659 | MDR-TB | lineage2.2.1 | None | ERR11044692 | MDR-TB | lineage4.8 | None | ERR552078 | MDR-TB | lineage4.4.1.1 | None | SRR7070133 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR5866125 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181355 | Pre-XDR-TB | lineage4.3.3 | None | SRR10808821 | MDR-TB | lineage4.1.1 | None | SRR1181062 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR11488352 | XDR-TB | lineage4.4.1.1 | None | ERR2497900 | MDR-TB | lineage4.9 | None | SRR19276633 | MDR-TB | lineage4.3.3 | None | ERR4020185 | MDR-TB | lineage4.4.1.1 | None | ERR13292582 | MDR-TB | lineage3 | None | ERR5866127 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488861 | XDR-TB | lineage4.4.1.1 | None | SRR9588011 | MDR-TB | lineage4.4.1.1 | None | SRR9588010 | MDR-TB | lineage4.4.1.1 | None | ERR3132140 | MDR-TB | lineage4.1.2.1 | None | ERR553243 | MDR-TB | lineage4.4.1.1 | None | ERR6866266 | RR-TB | lineage4.3.2 | None | ERR2497893 | MDR-TB | lineage4.9 | None | SRR13870419 | XDR-TB | lineage4.1.1 | None | ERR2497897 | MDR-TB | lineage4.9 | None | ERR13288955 | XDR-TB | lineage4.3.3 | None | ERR4020184 | MDR-TB | lineage4.4.1.1 | None | ERR9992708 | XDR-TB | lineage4.1.1.3 | None | ERR9993080 | MDR-TB | lineage4.3.3 | None | ERR2497881 | MDR-TB | lineage4.9 | None | SRR10147682 | MDR-TB | lineage4.5 | None | ERR9992922 | XDR-TB | lineage4.4.1.1 | None | ERR9993210 | RR-TB | lineage2.2.1.1 | None | ERR9992617 | MDR-TB | lineage4.4.1.1 | None | ERR9993053 | XDR-TB | lineage4.4.1.1 | None | ERR13289264 | XDR-TB | lineage4.4.1.1.1 | None | ERR9993052 | MDR-TB | lineage4.1.1.3 | None | ERR9992923 | XDR-TB | lineage4.4.1.1 | None | ERR4818546 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR3675218 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4830848 | MDR-TB | lineage4.4.1.1 | sz | SRR1184115 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488985 | Pre-XDR-TB | lineage4.3.3 | None | SRR26159057 | Pre-XDR-TB | lineage4.9 | None | ERR117688 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR10809080 | RR-TB | lineage2.1 | None | ERR2199767 | MDR-TB | lineage4.4.1.1 | None | ERR11488638 | MDR-TB | lineage4.4.1.1 | None | SRR7070423 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR11488390 | MDR-TB | lineage4.4.1.1 | None | ERR8774129 | MDR-TB | lineage4.3.2.1 | None | ERR9121354 | RR-TB | lineage4.1.2.1 | None | ERR13093932 | MDR-TB | lineage4.4.1.1 | None | ERR2497895 | RR-TB | lineage4.9 | None | ERR2884681 | MDR-TB | lineage4.1.2.1 | None | ERR266577 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR1723430 | MDR-TB | lineage2.2.2 | cn | SRR26159050 | MDR-TB | lineage4.9 | None | ERR9992748 | MDR-TB | lineage4.1.1.3 | None | ERR13260139 | MDR-TB | lineage4.1.2.1 | None | SRR1180356 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971043 | XDR-TB | lineage4.4.1.1.1 | None | ERR13267757 | MDR-TB | lineage4.8 | None | ERR11488951 | XDR-TB | lineage4.4.1.1 | None | SRR20969598 | MDR-TB | lineage2.2.2 | None | SRR29094459 | MDR-TB | lineage4.1.2.1 | None | ERR6052032 | MDR-TB | lineage4.3.2.1 | None | ERR403383 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR13260882 | MDR-TB | lineage4.4.1.1 | None | SRR1181008 | Pre-XDR-TB | lineage4.3.3 | None | SRR9588023 | MDR-TB | lineage4.4.1.1 | None | ERR13266995 | Pre-XDR-TB | lineage1.1.2 | None | ERR2099780 | RR-TB | lineage4.1.2.1 | None | SRR9588015 | MDR-TB | lineage4.4.1.1 | None | ERR114434 | MDR-TB | lineage4.3.3 | None | ERR2884681_ERR2099784 | MDR-TB | lineage4.1.2.1 | None | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | ERR2199994 | MDR-TB | lineage4.4.1.1 | None | ERR2200058 | MDR-TB | lineage4.4.1.1 | None | ERR270716 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR1196555 | MDR-TB | lineage4.3.3 | None | SRR29051204 | MDR-TB | lineage2.2.1 | None | ERR8665768 | Pre-XDR-TB | lineage2.2.1 | None | ERR13194659 | MDR-TB | lineage2.2.2 | None | SAMN03246276 | MDR-TB | lineage2.2.1 | cn |
|---|