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SRA data
Rv1854c
- c.879A>G
Drug resistance types
3 Sensitive
0 RR-TB
25 HR-TB
11 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
8 Other
lineage Counts
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lineage
Count
lineage
Count
M.canetti;lineage2.1;lineage4.9
9
M.canetti;lineage2.1;lineage4.9;lineage6.3
4
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
4
3
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
3
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
2
lineage2.1;lineage4.1.1.1;lineage6.3
2
lineage2.1;lineage4.9;lineage6.3
2
lineage4.9
1
lineage5.1.4
1
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spoligotype Counts
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spoligotype
Count
spoligotype
Count
None
47
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Geographic prevalence
Country level data for this variant is available for 0 isolates.
+
−
Variant Proportion
Hover over a Country
0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
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Statisctical support
Not enough data to calculate support.
Samples
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ID
Drug resistance
Lineage
Country iso2
ID
Drug resistance
Lineage
Country iso2
ERR266120
Sensitive
M.canetti
None
ERR266126
Sensitive
La2;M.canetti
None
ERR2693245
HR-TB
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
None
ERR3283016
HR-TB
La3;M.canetti;lineage2.1;lineage4.9
None
ERR3283017
MDR-TB
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
None
ERR3283020
HR-TB
La1.6;La3;M.canetti;lineage2.1;lineage4.9
None
ERR3597006
Other
La3;M.canetti
None
ERR3797014
Other
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
None
ERR3797016
HR-TB
M.canetti;lineage2.1;lineage4.9
None
ERR3797017
HR-TB
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
None
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