Rv3596c - c.-138delG


Drug resistance types
162 Sensitive 11 RR-TB 51 HR-TB 98 MDR-TB 72 Pre-XDR-TB 0 XDR-TB 23 Other
lineage Counts
lineage Count
lineage2.1 413
lineage2.1;lineage4.1.2.1 1
La3;lineage2 1
lineage2.1;lineage2.2.1.1 1
lineage2.1;lineage2.2.1 1
spoligotype Counts
spoligotype Count
None 417
Geographic prevalence
Country level data for this variant is available for 141 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
DRR473714 Sensitive lineage2.1 None
SRR26936963 MDR-TB lineage2.1 None
SRR10809026 MDR-TB lineage2.1 None
SRR5114019 Pre-XDR-TB lineage2.1 None
SRR11662530 MDR-TB lineage2.1 None
ERR775794 MDR-TB lineage2.1 th
ERR2517258 Sensitive lineage2.1 nl
ERR4828765 HR-TB lineage2.1 vn
SRR5709824 MDR-TB lineage2.1 th
ERR775784 MDR-TB lineage2.1 th
SRR1710066 Sensitive lineage2.1 cn
SRR21747001 RR-TB lineage2.1 None
SRR11662296 MDR-TB lineage2.1 None
SRR21689793 MDR-TB lineage2.1 None
SRR5065467 Sensitive lineage2.1 vn
ERR9119326 HR-TB lineage2.1 None
DRR130078 Pre-XDR-TB lineage2.1 None
ERR11049136 MDR-TB lineage2.1 None
SRR26399309 MDR-TB lineage2.1 None
ERR9119325 MDR-TB lineage2.1 None
ERR2514124 Sensitive lineage2.1 None
SRR5709798 Pre-XDR-TB lineage2.1 th
SRR10341352 Pre-XDR-TB lineage2.1 None
ERR4831730 HR-TB lineage2.1 vn
DRR130141 Pre-XDR-TB lineage2.1 None
SRR26399175 HR-TB lineage2.1 None
SRR1011503 Sensitive lineage2.1 None
SRR5074054 HR-TB lineage2.1 vn
SRR6152853 Sensitive lineage2.1 ca
ERR7737907 MDR-TB lineage2.1 None
SRR22250173 Sensitive lineage2.1 None
SRR26399738 HR-TB lineage2.1 None
SRR6480443 Sensitive lineage2.1 None
SRR5067642 Sensitive lineage2.1 vn
SRR21676416 Sensitive lineage2.1 None
SRR10808988 Sensitive lineage2.1 None
SRR21690953 Sensitive lineage2.1 None
SRR11715725 Pre-XDR-TB lineage2.1 None
SRR1710070 Sensitive lineage2.1 cn
SRR26112747 Sensitive lineage2.1 None
DRR188492 Sensitive lineage2.1 None
SRR21576681 MDR-TB lineage2.1 None
ERR2503370 Sensitive lineage2.1 fi
SRR5073739 HR-TB lineage2.1 vn
ERR031469 Sensitive lineage2.1 None
SRR10808501 Sensitive lineage2.1 None
ERR11049274 MDR-TB lineage2.1 None
DRR130093 MDR-TB lineage2.1 None
ERR4831602 MDR-TB lineage2.1 vn
SRR5073822 HR-TB lineage2.1 vn
SRR26399652 Sensitive lineage2.1 None
SRR21747020 MDR-TB lineage2.1 None
SRR21747059 MDR-TB lineage2.1 None
ERR11068593 Sensitive lineage2.1 None
SRR6153099 Sensitive lineage2.1 ca
SRR5065294 Sensitive lineage2.1 vn
SRR11662620 MDR-TB lineage2.1 None
SRR22251672 Other lineage2.1 None
DRR189007 Sensitive lineage2.1 None
SRR10040174 Pre-XDR-TB lineage2.1 None
SRR5073995 Sensitive lineage2.1 vn
ERR9119231 HR-TB lineage2.1 None
ERR11049648 Sensitive lineage2.1 None
SRR11828964 MDR-TB lineage2.1 None
SRR5074182 Sensitive lineage2.1 vn
SRR5074174 Other lineage2.1 vn
SRR3205958 Pre-XDR-TB lineage2.1 None
SRR28339298 Pre-XDR-TB lineage2.1 None
ERR4817862 HR-TB lineage2.1 gb
ERR4830262 Sensitive lineage2.1 vn
ERR4828640 HR-TB lineage2.1 vn
SRR21747054 Pre-XDR-TB lineage2.1 None
SRR22249459 Sensitive lineage2.1 None
ERR3273209 MDR-TB lineage2.1 None
SRR12072597 Pre-XDR-TB lineage2.1 None
ERR7737924 MDR-TB lineage2.1 None
SRR17729383 Sensitive lineage2.1 None
SRR26399621 Sensitive lineage2.1 None
SRR26399765 Sensitive lineage2.1 None
ERR775766 HR-TB lineage2.1 th
SRR11662502 MDR-TB lineage2.1 None
SRR5065283 Other lineage2.1 vn
SRR21732243 Sensitive lineage2.1 None
SRR14519956 Other lineage2.1 None
SRR1710065 Sensitive lineage2.1 cn
DRR184642 Sensitive lineage2.1 vn
SRR5065551 Other lineage2.1 vn
DRR473991 Sensitive lineage2.1 None
SRR24799276 Sensitive lineage2.1 None
ERR4830396 MDR-TB lineage2.1 vn
SRR11662628 MDR-TB lineage2.1 None
SRR10828200 Pre-XDR-TB lineage2.1 None
SRR5073838 Sensitive lineage2.1 vn
SRR11662293 MDR-TB lineage2.1 None
SRR21690988 Sensitive lineage2.1 None
SRR11662417 Pre-XDR-TB lineage2.1 None
SRR5065278 Sensitive lineage2.1 vn
SRR21576627 MDR-TB lineage2.1 None
ERR3275582 Sensitive lineage2.1 nl
ERR4832040 HR-TB lineage2.1 None
ERR4830275 Sensitive lineage2.1 vn
SRR14519689 Sensitive lineage2.1 None
SRR5114021 Pre-XDR-TB lineage2.1 None
SRR11662457 MDR-TB lineage2.1 None
SRR8237298 Sensitive lineage2.1 ch
SRR22249862 Sensitive lineage2.1 None
SRR20969663 MDR-TB lineage2.1 None
SRR5074093 Sensitive lineage2.1 vn
SRR1019178 Sensitive lineage2.1 None
ERR775787 Sensitive lineage2.1 th
ERR8773618 MDR-TB lineage2.1 None
SRR20969866 HR-TB lineage2.1 None
SRR10828193 Pre-XDR-TB lineage2.1 None
SRR20970022 Sensitive lineage2.1 None
SRR26399189 Sensitive lineage2.1 None
SRR10185944 MDR-TB lineage2.1 None
SRR5073866 Sensitive lineage2.1 vn
SRR22249793 Sensitive lineage2.1 None
SRR11828979 Pre-XDR-TB lineage2.1 th
SRR11828970 MDR-TB lineage2.1 None
SRR10809158 Sensitive lineage2.1 None
SRR1710064 Sensitive lineage2.1 cn
SRR10828183 Pre-XDR-TB lineage2.1 None
ERR8774471 Other lineage2.1 None
SRR10808635 Sensitive lineage2.1 None
SRR21732682 HR-TB lineage2.1 None
ERR7737678 MDR-TB lineage2.1 None
SRR5073883 Sensitive lineage2.1 vn
SRR21576700 MDR-TB lineage2.1 None
SRR10341353 Pre-XDR-TB lineage2.1 None
SRR5065579 Sensitive lineage2.1 vn
SRR5709897 Pre-XDR-TB lineage2.1 th
SRR24083713 Sensitive lineage2.1;lineage4.1.2.1 None
DRR473770 Sensitive lineage2.1 None
ERR7911290 MDR-TB lineage2.1 vn
ERR4828381 MDR-TB lineage2.1 vn
SRR5073656 Sensitive lineage2.1 vn
SRR5073548 Other lineage2.1 vn
SRR5114020 Pre-XDR-TB lineage2.1 None
SRR5065411 HR-TB lineage2.1 vn
ERR4828247 HR-TB lineage2.1 vn
SRR7069733 Sensitive lineage2.1 None
SRR5709764 Pre-XDR-TB lineage2.1 th
ERR4814575 Sensitive lineage2.1 None
SRR5710027 Pre-XDR-TB lineage2.1 th
SRR11662308 MDR-TB lineage2.1 None
SRR22250136 Other lineage2.1 None
SRR11662223 MDR-TB lineage2.1 None
SRR15368709 HR-TB lineage2.1 None
SRR10808634 RR-TB lineage2.1 None
DRR474007 Sensitive lineage2.1 None
SRR1710069 Sensitive lineage2.1 cn
SRR6325456 Other lineage2.1 us
SRR11828976 Pre-XDR-TB lineage2.1 th
ERR2513708 Sensitive lineage2.1 None
SRR20969515 HR-TB lineage2.1 None
SRR13180316 HR-TB lineage2.1 None
SRR20969633 HR-TB lineage2.1 None
ERR7911304 MDR-TB lineage2.1 vn
SRR1710068 Sensitive lineage2.1 cn
SRR12072599 Pre-XDR-TB lineage2.1 None
SRR5065563 Sensitive lineage2.1 vn
SRR11828971 MDR-TB lineage2.1 None
SRR26112753 Sensitive lineage2.1 None
SRR5073499 Sensitive lineage2.1 vn
SRR21576561 RR-TB lineage2.1 None
SRR5709934 Pre-XDR-TB lineage2.1 th
SRR7517776 Sensitive lineage2.1 th
ERR7911125 RR-TB lineage2.1 vn
SRR10828644 MDR-TB lineage2.1 None
SRR11662474 MDR-TB lineage2.1 None
SRR20969677 HR-TB La3;lineage2 None
SRR10828203 Pre-XDR-TB lineage2.1 None
SRR1710071 RR-TB lineage2.1 cn
SRR5065617 Sensitive lineage2.1 vn
SRR22249632 Other lineage2.1 None
ERR11081260 Sensitive lineage2.1 None
SRR11662503 MDR-TB lineage2.1 None
SRR14519949 Other lineage2.1 None
ERR9119371 Sensitive lineage2.1 None
SRR26399799 HR-TB lineage2.1 None
DRR188928 Sensitive lineage2.1 None
ERR4811554 MDR-TB lineage2.1;lineage2.2.1.1 cn
SRR22250055 HR-TB lineage2.1 None
SRR6152685 Other lineage2.1 ca
SRR26399879 Other lineage2.1 None
ERR031475 Sensitive lineage2.1 None
SRR21747063 MDR-TB lineage2.1 None
SRR22251586 Other lineage2.1 None
SRR5067550 Other lineage2.1 vn
SRR5065604 Sensitive lineage2.1 vn
SRR5709887 Pre-XDR-TB lineage2.1 th
DRR474050 Sensitive lineage2.1 None
SRR1710063 Sensitive lineage2.1 cn
SRR18913794 Sensitive lineage2.1 None
SRR26936969 MDR-TB lineage2.1 None
SRR5065678 Sensitive lineage2.1 vn
SRR5065382 Sensitive lineage2.1 vn
SRR11828963 MDR-TB lineage2.1 None
ERR4831637 MDR-TB lineage2.1 vn
SRR5114018 Pre-XDR-TB lineage2.1 None
SRR26399630 Sensitive lineage2.1 None
ERR4832052 HR-TB lineage2.1 vn
SRR6152905 HR-TB lineage2.1 ca
SRR26399205 Sensitive lineage2.1 None
SRR5709899 Pre-XDR-TB lineage2.1 th
SRR11828969 MDR-TB lineage2.1 None
SRR24083615 Sensitive lineage2.1 None
SRR3205959 Pre-XDR-TB lineage2.1 None
SRR21733227 HR-TB lineage2.1 None
ERR768032 RR-TB lineage2.1 th
SRR3724672 Sensitive lineage2.1 None
SRR26112230 Sensitive lineage2.1 None
SRR28409607 Sensitive lineage2.1 None
SRR28409308 Sensitive lineage2.1 None
ERR11774878 Sensitive lineage2.1 None
SRR28339297 Pre-XDR-TB lineage2.1 None
ERR4828566 HR-TB lineage2.1 vn
ERR4830363 HR-TB lineage2.1 vn
ERR551044 HR-TB lineage2.1 None
ERR4830397 HR-TB lineage2.1 vn
SRR5065441 Sensitive lineage2.1 vn
SRR5074136 Sensitive lineage2.1 vn
SRR5837708 Pre-XDR-TB lineage2.1 th
SRR5709883 Pre-XDR-TB lineage2.1 th
SRR21685332 Sensitive lineage2.1 None
SRR5073761 Sensitive lineage2.1 vn
ERR752234 MDR-TB lineage2.1 th
SRR5067285 Sensitive lineage2.1 vn
SRR26937040 MDR-TB lineage2.1 None
SRR5067461 HR-TB lineage2.1 vn
SRR5114022 Pre-XDR-TB lineage2.1 None
ERR11081113 Sensitive lineage2.1 None
SRR21277570 HR-TB lineage2.1 None
SRR6339664 MDR-TB lineage2.1 None
SRR21576574 MDR-TB lineage2.1 None
ERR4831605 MDR-TB lineage2.1 vn
SRR11828980 MDR-TB lineage2.1 None
SRR10809132 Sensitive lineage2.1 None
SRR16100725 Sensitive lineage2.1 None
SRR11828989 Pre-XDR-TB lineage2.1 th
SRR11715717 Sensitive lineage2.1 None
ERR9119439 HR-TB lineage2.1 None
SRR11662498 Pre-XDR-TB lineage2.1 None
SRR15368923 Sensitive lineage2.1 None
ERR3273141 RR-TB lineage2.1 None
SRR11828991 Pre-XDR-TB lineage2.1 None
SRR5709762 Pre-XDR-TB lineage2.1 th
SRR10828191 Pre-XDR-TB lineage2.1 None
SRR21690002 Sensitive lineage2.1 None
SRR5073902 Other lineage2.1 vn
SRR21746995 MDR-TB lineage2.1 None
SRR11715720 Pre-XDR-TB lineage2.1 None
ERR4832015 HR-TB lineage2.1 vn
SRR11715715 MDR-TB lineage2.1 None
SRR26399649 Sensitive lineage2.1 None
ERR7361943 Sensitive lineage2.1 None
SRR11828975 Pre-XDR-TB lineage2.1 th
SRR8237361 Sensitive lineage2.1 None
SRR21747057 MDR-TB lineage2.1 None
SRR21576582 MDR-TB lineage2.1 None
SRR1710072 Sensitive lineage2.1 cn
ERR4828547 Sensitive lineage2.1 vn
SRR11828990 Pre-XDR-TB lineage2.1 None
ERR4828364 HR-TB lineage2.1 None
SRR10828184 Pre-XDR-TB lineage2.1 None
ERR270697 HR-TB lineage2.1 None
ERR4828594 Sensitive lineage2.1 vn
DRR034421 Other lineage2.1 None
SRR5065619 Other lineage2.1 vn
SRR11828982 Pre-XDR-TB lineage2.1 th
SRR11828987 Pre-XDR-TB lineage2.1 None
SRR11662627 MDR-TB lineage2.1 None
SRR5709898 Pre-XDR-TB lineage2.1 th
SRR11662439 MDR-TB lineage2.1 None
SRR26399943 HR-TB lineage2.1 None
SRR20969753 Sensitive lineage2.1;lineage2.2.1 None
SRR11828961 MDR-TB lineage2.1 None
SRR24083714 Sensitive lineage2.1 None
ERR751993 Sensitive lineage2.1 th
SRR10809108 Sensitive lineage2.1 None
SRR26399473 Sensitive lineage2.1 None
SRR25207056 Pre-XDR-TB lineage2.1 None
ERR8773616 MDR-TB lineage2.1 None
DRR474158 Sensitive lineage2.1 None
SRR11828988 Pre-XDR-TB lineage2.1 None
ERR9119373 Sensitive lineage2.1 None
SRR25206889 Pre-XDR-TB lineage2.1 None
SRR26400065 MDR-TB lineage2.1 None
DRR473886 Sensitive lineage2.1 None
SRR10808856 Sensitive lineage2.1 None
SRR5073637 HR-TB lineage2.1 vn
SRR26399834 HR-TB lineage2.1 None
SRR26399375 Sensitive lineage2.1 None
SRR21576605 RR-TB lineage2.1 None
SRR22250260 Sensitive lineage2.1 None
SRR11662677 Pre-XDR-TB lineage2.1 None
SRR5067408 HR-TB lineage2.1 vn
SRR11828978 Pre-XDR-TB lineage2.1 th
SRR11662669 MDR-TB lineage2.1 None
SRR15368921 Sensitive lineage2.1 None
SRR11662162 Pre-XDR-TB lineage2.1 None
ERR4831618 MDR-TB lineage2.1 None
SRR5065297 Sensitive lineage2.1 vn
SRR11828965 MDR-TB lineage2.1 None
SRR21709618 Sensitive lineage2.1 None
DRR473960 Sensitive lineage2.1 None
SRR11662572 MDR-TB lineage2.1 None
SRR20632799 Pre-XDR-TB lineage2.1 None
SRR26399854 MDR-TB lineage2.1 None
SRR8237370 Sensitive lineage2.1 None
SRR5709814 MDR-TB lineage2.1 th
DRR130077 Pre-XDR-TB lineage2.1 None
SRR26399764 Sensitive lineage2.1 None
ERR4832049 MDR-TB lineage2.1 vn
SRR3724666 HR-TB lineage2.1 None
SRR5114017 Pre-XDR-TB lineage2.1 None
SRR5073921 Sensitive lineage2.1 vn
DRR188602 Sensitive lineage2.1 None
ERR4831997 MDR-TB lineage2.1 None
DRR261044 Sensitive lineage2.1 None
SRR21576688 MDR-TB lineage2.1 None
DRR189026 Sensitive lineage2.1 None
DRR474009 Sensitive lineage2.1 None
SRR5065301 Sensitive lineage2.1 vn
SRR22249713 HR-TB lineage2.1 None
SRR26937143 MDR-TB lineage2.1 None
SRR22251329 Other lineage2.1 None
SRR12006591 Sensitive lineage2.1 None
SRR11715723 MDR-TB lineage2.1 None
SRR11662528 MDR-TB lineage2.1 None
SRR11828983 Pre-XDR-TB lineage2.1 th
DRR261166 HR-TB lineage2.1 None
SRR21576631 MDR-TB lineage2.1 None
SRR5709872 Pre-XDR-TB lineage2.1 th
SRR10341347 Pre-XDR-TB lineage2.1 None
SRR5067510 Sensitive lineage2.1 vn
ERR7737929 MDR-TB lineage2.1 None
SRR24083740 Sensitive lineage2.1 None
ERR7911509 MDR-TB lineage2.1 vn
SRR5065292 HR-TB lineage2.1 vn
SRR5817473 MDR-TB lineage2.1 au
SRR21732823 Sensitive lineage2.1 None
SRR10185945 MDR-TB lineage2.1 None
SRR10040460 Pre-XDR-TB lineage2.1 None
SRR28170771 Sensitive lineage2.1 None
SRR26399167 HR-TB lineage2.1 None
ERR234252 Sensitive lineage2.1 us
ERR553373 Sensitive lineage2.1 de
SRR5065418 Sensitive lineage2.1 vn
SRR5067713 Sensitive lineage2.1 vn
SRR10040398 MDR-TB lineage2.1 None
ERR8773684 MDR-TB lineage2.1 None
SRR11828973 Pre-XDR-TB lineage2.1 th
SRR1710062 Other lineage2.1 cn
SRR26937132 RR-TB lineage2.1 None
SRR1710061 Sensitive lineage2.1 cn
SRR22249747 MDR-TB lineage2.1 None
SRR22251890 Sensitive lineage2.1 None
SRR5067475 Sensitive lineage2.1 vn
SRR5067580 Sensitive lineage2.1 vn
SRR16100240 Sensitive lineage2.1 None
SRR5073710 Sensitive lineage2.1 vn
ERR4822352 Pre-XDR-TB lineage2.1 None
SRR22249972 Sensitive lineage2.1 None
SRR5067554 Other lineage2.1 vn
ERR234248 Sensitive lineage2.1 us
ERR7911277 MDR-TB lineage2.1 vn
SRR11828977 Pre-XDR-TB lineage2.1 th
SRR10808989 Sensitive lineage2.1 None
SRR11715724 Pre-XDR-TB lineage2.1 None
SRR10394882 Pre-XDR-TB lineage2.1 None
ERR3273198 MDR-TB lineage2.1 None
ERR11044724 Sensitive lineage2.1 None
SRR21747071 MDR-TB lineage2.1 None
ERR4830412 HR-TB lineage2.1 vn
SRR21732985 Sensitive lineage2.1 None
SRR10341349 Pre-XDR-TB lineage2.1 None
ERR7911475 RR-TB lineage2.1 vn
ERR7339141 Sensitive lineage2.1 None
SRR21576630 MDR-TB lineage2.1 None
SRR1710067 Sensitive lineage2.1 cn
SRR5710021 Pre-XDR-TB lineage2.1 th
ERR4828548 Sensitive lineage2.1 vn
SRR10809080 RR-TB lineage2.1 None
SRR5709822 MDR-TB lineage2.1 th
ERR2843486 HR-TB lineage2.1 None
SRR11828986 MDR-TB lineage2.1 th
SRR12072600 Pre-XDR-TB lineage2.1 None
SRR10808945 Sensitive lineage2.1 None
SRR20969953 HR-TB lineage2.1 None
SRR10809073 Sensitive lineage2.1 None
SRR10040392 Pre-XDR-TB lineage2.1 None
SRR11662288 MDR-TB lineage2.1 None
SRR10040230 MDR-TB lineage2.1 None
SRR11828967 MDR-TB lineage2.1 None
SRR11828968 MDR-TB lineage2.1 None
ERR11043783 Sensitive lineage2.1 None
SRR12072598 Pre-XDR-TB lineage2.1 None
SRR10040389 MDR-TB lineage2.1 None
SRR11715722 Pre-XDR-TB lineage2.1 None
SRR11715719 MDR-TB lineage2.1 None
DRR185119 Sensitive lineage2.1 vn
DRR261132 HR-TB lineage2.1 None
SRR11715721 MDR-TB lineage2.1 None
ERR3273195 MDR-TB lineage2.1 None
ERR3275732 Sensitive lineage2.1 nl
SRR21689528 Other lineage2.1 None
SRR6480524 Sensitive lineage2.1 None
SRR5065487 Sensitive lineage2.1 vn
SRR20969467 Pre-XDR-TB lineage2.1 None
SRR14520114 Sensitive lineage2.1 None
ERR11049075 Sensitive lineage2.1 None
ERR2446339 Sensitive lineage2.1 nl
SRR5067683 HR-TB lineage2.1 vn
SRR10394883 Pre-XDR-TB lineage2.1 None
SRR15316176 Other lineage2.1 None