Rv3794 - c.-43G>C

Drug resistance types
1 Sensitive 5 RR-TB 14 HR-TB 188 MDR-TB 125 Pre-XDR-TB 12 XDR-TB 0 Other
lineage Counts
lineage Count
lineage2.2.1 86
lineage1.1.2 2
lineage3 31
lineage2.2.1.1 38
lineage4.4.1.1 69
lineage4.2.1.1 5
lineage4.1.1.3 6
lineage4. 3
lineage4.2.2.2 4
lineage4.1.2.1 12
lineage4.3.4.2 22
lineage2.2 3
lineage4.6.1.2 8
lineage4.6.2.2 7
lineage3.1.2 4
lineage4.2.2 1
lineage4.6.1;lineage2.2.1.1 1
lineage2.2.2 2
lineage4.7 13
lineage4.6.4 1
lineage4.1.1 1
lineage4.1.2 1
lineage4.3.2 1
lineage4.5 1
lineage4.3.3 2
lineage4.3 1
lineage4.3.4.1 4
lineage4.8;lineage4.4.1.1 1
lineage4.3.2.1 1
lineage4.8 4
lineage4 2
lineage3.1.2.1 1
lineage2.2.1.2 2
lineage2.1 1
lineage3.1.1 1
spoligotype Counts
spoligotype Count
None 345
Geographic prevalence
Country level data for this variant is available for 166 isolates.
Statisctical support
Not enough data to calculate support.
ID Drug resistance Lineage Country iso2
ERR2510659 MDR-TB lineage2.2.1 it
ERR4818045 HR-TB lineage1.1.2 gb
SRR671759 Pre-XDR-TB lineage2.2.1 cn
ERR2510861 MDR-TB lineage3 pk
ERR2510871 Pre-XDR-TB lineage2.2.1.1 pk
ERR2510870 Pre-XDR-TB lineage2.2.1.1 pk
ERR5917967 Pre-XDR-TB lineage4.4.1.1 za
ERR2510882 Pre-XDR-TB lineage4.2.1.1 it
ERR551692 Pre-XDR-TB lineage4.1.1.3 sz
ERR2433011 MDR-TB lineage4. None
ERR245725 HR-TB lineage4. mw
ERR245747 MDR-TB lineage3 mw
ERR552539 MDR-TB lineage3 de
SAMN02419591 Pre-XDR-TB lineage2.2.1 by
ERR5917720 MDR-TB lineage2.2.1 by
ERR2510252 Pre-XDR-TB lineage2.2.1.1 pk
ERR7911159 MDR-TB lineage2.2.1.1 vn
ERR2510342 Pre-XDR-TB lineage3 pk
ERR2510245 MDR-TB lineage3 pk
ERR2510305 MDR-TB lineage2.2.1.1 pk
ERR2510347 MDR-TB lineage3 pk
ERR2510400 Pre-XDR-TB lineage4.2.2.2 pk
ERR2515284 MDR-TB lineage4.1.2.1 za
ERR2510478 Pre-XDR-TB lineage3 pk
ERR2510483 MDR-TB lineage3 pk
ERR2515337 Pre-XDR-TB lineage4.1.1.3 za
SRR8651598 Pre-XDR-TB lineage2.2.1 cn
ERR2516392 MDR-TB lineage3 be
ERR2516519 MDR-TB lineage2.2.1 nl
ERR2515474 Pre-XDR-TB lineage4.1.1.3 za
ERR2516463 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516478 Pre-XDR-TB lineage4.3.4.2 pe
ERR2515554 MDR-TB lineage4.1.2.1 None
ERR7911203 MDR-TB lineage4.4.1.1 za
ERR2515636 MDR-TB lineage4.4.1.1 za
SAMN02403580 MDR-TB lineage4.4.1.1 za
ERR7911191 MDR-TB lineage4.1.2.1 za
SRR6824632 RR-TB lineage2.2.1 cn
ERR2517001 MDR-TB lineage4.1.2.1 gb
SAMN02403495 MDR-TB lineage4.4.1.1 za
ERR8975725 MDR-TB lineage4.1.1.3 None
ERR7911438 MDR-TB lineage4.4.1.1 za
SRR671781 Pre-XDR-TB lineage2.2.1 cn
SAMN02419560 MDR-TB lineage2.2.1 by
SAMN02350474 MDR-TB lineage4.4.1.1 za
ERR2653084 MDR-TB lineage4.4.1.1 None
ERR4822285 XDR-TB lineage2.2.1 None
ERR2707210 MDR-TB lineage4.3.4.2 cd
ERR4819920 MDR-TB lineage3 None
ERR2517096 MDR-TB lineage2.2.1 gb
ERR2516213 Pre-XDR-TB lineage2.2.1 be
SRR5341326 MDR-TB lineage3 in
ERR2515242 MDR-TB lineage4.4.1.1 za
ERR8975512 Pre-XDR-TB lineage4.4.1.1 None
ERR2516329 MDR-TB lineage4.3.4.2 be
ERR2653148 Pre-XDR-TB lineage4.1.2.1 None
ERR2707204 MDR-TB lineage4.3.4.2 cd
ERR2653198 Pre-XDR-TB lineage4.4.1.1 None
ERR2707136 MDR-TB lineage4.3.4.2 cd
SRR23311018 Pre-XDR-TB lineage2.2 None
ERR2706959 MDR-TB lineage4.6.1.2 cd
ERR2707057 MDR-TB lineage4.6.1.2 cd
ERR2707081 MDR-TB lineage4.3.4.2 cd
ERR2707225 MDR-TB lineage4.3.4.2 cd
SRR23310911 MDR-TB lineage2.2 None
SRR23340004 Sensitive lineage4.1.2.1 None
ERR2707053 MDR-TB lineage4.6.1.2 cd
ERR4827928 RR-TB lineage2.2.1 None
ERR2707107 MDR-TB lineage4.3.4.2 cd
ERR2707172 MDR-TB lineage4.3.4.2 cd
ERR2707123 MDR-TB lineage4.6.1.2 cd
ERR4822307 MDR-TB lineage3 de
ERR4828008 HR-TB lineage2.2.1 None
ERR4822360 MDR-TB lineage2.2.1 None
ERR4828009 HR-TB lineage2.2.1 None
ERR5866129 MDR-TB lineage2.2.1 None
ERR5864862 Pre-XDR-TB lineage2.2.1 None
SRR10808787 Pre-XDR-TB lineage2.2.1 None
ERR7737802 MDR-TB lineage4.4.1.1 None
ERR8774265 Pre-XDR-TB lineage4.6.2.2 None
SRR1175074 MDR-TB None
SRR1173786 MDR-TB lineage4.4.1.1 None
SRR12416825 Pre-XDR-TB lineage2.2.1 None
SRR11972192 MDR-TB lineage2.2.1.1 None
SRR1184372 MDR-TB None
SRR22424806 MDR-TB lineage3 None
SRR22424733 RR-TB lineage3.1.2 None
SRR18715041 Pre-XDR-TB lineage4.2.1.1 None
SRR9971191 MDR-TB lineage4.4.1.1 None
SRR6785511 MDR-TB lineage2.2.1 None
SRR5817465 Pre-XDR-TB lineage2.2.1.1 None
ERR4829990 MDR-TB lineage4.1.2.1 None
ERR4830490 MDR-TB lineage4.4.1.1 za
ERR4830499 MDR-TB lineage4.4.1.1 za
ERR4829969 MDR-TB lineage3 pk
ERR4829142 Pre-XDR-TB lineage2.2.1 pk
ERR4830561 Pre-XDR-TB lineage4.4.1.1 None
ERR7737788 MDR-TB lineage4.4.1.1 None
ERR4830562 Pre-XDR-TB lineage4.4.1.1 None
ERR4828371 RR-TB lineage4.2.2 vn
ERR7737747 MDR-TB lineage4.4.1.1 None
ERR8774232 Pre-XDR-TB lineage4.6.2.2 None
ERR7911446 MDR-TB lineage4.4.1.1 za
SAMN02403514 Pre-XDR-TB lineage4.4.1.1 za
SAMN02053755 MDR-TB lineage4.4.1.1 za
SAMN02053771 MDR-TB lineage4.4.1.1 za
SRR1173866 MDR-TB lineage4.6.1;lineage2.2.1.1 None
SRR10315510 MDR-TB lineage4.4.1.1 None
SAMN02403535 MDR-TB lineage4.4.1.1 za
SRR10315616 Pre-XDR-TB lineage4.4.1.1 None
SRR1173095 MDR-TB lineage4.4.1.1 None
SRR1196558 MDR-TB lineage4.4.1.1 None
SRR8651645 Pre-XDR-TB lineage2.2.1 cn
SRR5817462 Pre-XDR-TB lineage2.2.1 None
ERR4831012 Pre-XDR-TB lineage2.2.1.1 np
ERR3077943 MDR-TB lineage1.1.2 None
SRR9613552 MDR-TB lineage2.2.2 None
ERR3077945 MDR-TB lineage2.2.1.1 None
ERR4872037 Pre-XDR-TB lineage4.7 None
ERR4872039 XDR-TB lineage4.7 None
ERR4872038 Pre-XDR-TB lineage4.7 None
ERR4872045 Pre-XDR-TB lineage4.7 None
ERR4872041 Pre-XDR-TB lineage4.7 None
ERR4872040 Pre-XDR-TB lineage4.7 None
ERR4872042 XDR-TB lineage4.7 None
ERR4872043 Pre-XDR-TB lineage4.7 None
ERR4872044 XDR-TB lineage4.7 None
ERR4872047 XDR-TB lineage4.7 None
ERR4872049 Pre-XDR-TB lineage4.7 None
ERR4872048 XDR-TB lineage4.7 None
ERR4872046 XDR-TB lineage4.7 None
ERR4831442 Pre-XDR-TB lineage3 None
ERR4831433 Pre-XDR-TB lineage3 None
ERR4831469 MDR-TB lineage3 None
ERR4872102 MDR-TB lineage4.6.4 None
ERR4831434 Pre-XDR-TB lineage3 None
ERR4831479 Pre-XDR-TB lineage2.2.1 None
ERR4872163 MDR-TB lineage4.6.2.2 None
ERR4831497 Pre-XDR-TB lineage3 pk
ERR4872162 MDR-TB lineage4.6.2.2 None
ERR4831525 Pre-XDR-TB lineage3 pk
ERR4831811 MDR-TB lineage2.2.1 vn
ERR502248 MDR-TB lineage3 None
ERR4831789 MDR-TB lineage2.2.1 vn
ERR4872185 MDR-TB lineage4.1.1 None
ERR4872240 MDR-TB lineage4.6.2.2 None
ERR4831821 MDR-TB lineage2.2 vn
ERR5864527 MDR-TB lineage4.2.1.1 None
ERR5864522 MDR-TB lineage4.2.1.1 None
ERR9993071 Pre-XDR-TB lineage4.4.1.1 None
ERR5865276 Pre-XDR-TB lineage2.2.1 None
ERR5865252 Pre-XDR-TB lineage2.2.1 None
SRR5535924 MDR-TB lineage2.2.1.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR1169314 MDR-TB lineage4.4.1.1 None
SRR1723555 MDR-TB lineage2.2.1 cn
SRR5065407 MDR-TB lineage2.2.1 vn
SRR5153316 MDR-TB lineage4.2.1.1 None
SRR5486904 MDR-TB lineage4.4.1.1 None
SRR6789637 MDR-TB lineage2.2.1 None
ERR5864858 Pre-XDR-TB lineage2.2.1 None
SRR9970996 XDR-TB lineage4.4.1.1 None
SRR9971319 MDR-TB lineage4.1.2 None
ERR3132127 Pre-XDR-TB lineage2.2.1.1 None
ERR3077933 MDR-TB lineage4. None
ERR5865255 Pre-XDR-TB lineage2.2.1 None
ERR5865277 MDR-TB lineage2.2.1 None
ERR9993129 Pre-XDR-TB lineage4.4.1.1 None
ERR5866128 MDR-TB lineage2.2.1 None
ERR9907669 MDR-TB lineage4.3.2 None
SAMN02350492 Pre-XDR-TB lineage4.4.1.1 za
SRR1173187 Pre-XDR-TB lineage4.4.1.1 None
SAMN02419636 Pre-XDR-TB lineage2.2.1 by
SRR1163291 Pre-XDR-TB lineage2.2.1 None
SRR1169310 MDR-TB lineage4.4.1.1 None
DRR130057 Pre-XDR-TB lineage2.2.1 None
SRR1184040 MDR-TB lineage2.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
DRR130138 Pre-XDR-TB lineage4.5 None
DRR130058 Pre-XDR-TB lineage2.2.1 None
DRR130162 MDR-TB lineage2.2.1 None
DRR130168 Pre-XDR-TB lineage2.2.1 None
DRR130171 Pre-XDR-TB lineage2.2.1 None
DRR130167 Pre-XDR-TB lineage2.2.1 None
DRR130170 Pre-XDR-TB lineage2.2.1 None
DRR130169 Pre-XDR-TB lineage2.2.1 None
ERR040127 MDR-TB lineage4.6.1.2 ug
DRR130166 Pre-XDR-TB lineage2.2.1 None
DRR130197 Pre-XDR-TB lineage2.2.1 None
ERR1034583 Pre-XDR-TB lineage3 pk
ERR10225494 Pre-XDR-TB lineage2.2.1.1 None
ERR067611 MDR-TB lineage2.2.1 ru
ERR1023399 MDR-TB lineage4.3.3 None
ERR1034596 Pre-XDR-TB lineage3 pk
ERR1034784 Pre-XDR-TB lineage4.3.4.2 pe
ERR1034672 MDR-TB lineage4.3 co
ERR1034681 MDR-TB lineage4.1.2.1 co
ERR1034764 MDR-TB lineage4.3.4.1 pe
ERR1035258 Pre-XDR-TB lineage4.1.2.1 br
ERR10748224 MDR-TB lineage4.4.1.1 None
ERR10748180 MDR-TB lineage4.4.1.1 None
ERR10748185 MDR-TB lineage4.4.1.1 None
ERR1035260 Pre-XDR-TB lineage4.1.2.1 br
ERR10748251 MDR-TB lineage4.4.1.1 None
ERR10748274 MDR-TB lineage4.4.1.1 None
ERR10748259 MDR-TB lineage4.4.1.1 None
ERR10748268 MDR-TB lineage4.4.1.1 None
ERR10877861 MDR-TB lineage2.2.1 None
ERR10748318 MDR-TB lineage4.1.1.3 None
ERR10869132 Pre-XDR-TB lineage2.2.1 None
ERR10748445 MDR-TB lineage4.4.1.1 None
ERR10877876 MDR-TB lineage2.2.1 None
ERR10869118 Pre-XDR-TB lineage2.2.1 None
ERR11043091 MDR-TB lineage2.2.1 None
ERR10877886 MDR-TB lineage2.2.1 None
ERR10877890 Pre-XDR-TB lineage2.2.1 None
ERR11043660 HR-TB lineage4.4.1.1 None
ERR11043158 HR-TB lineage4.4.1.1 None
ERR11043524 HR-TB lineage4.4.1.1 None
ERR11043584 HR-TB lineage4.4.1.1 None
ERR11043214 HR-TB lineage4.4.1.1 None
ERR11043735 XDR-TB lineage2.2.1 None
ERR11043991 MDR-TB lineage2.2.1 None
ERR11044179 HR-TB lineage4.4.1.1 None
ERR11043990 MDR-TB lineage2.2.1 None
ERR144566 MDR-TB lineage2.2.1 ru
ERR11044603 HR-TB lineage4.8;lineage4.4.1.1 None
ERR1193880 Pre-XDR-TB lineage4.3.2.1 za
ERR1199102 MDR-TB lineage4.6.1.2 cd
ERR1199128 MDR-TB lineage4.6.1.2 cd
ERR1213887 Pre-XDR-TB lineage2.2.1.1 np
ERR11044561 HR-TB lineage4.4.1.1 None
ERR11044814 HR-TB lineage4.4.1.1 None
ERR1199096 MDR-TB lineage4.6.1.2 cd
ERR4423534 MDR-TB lineage2.2.1.1 None
ERR3273148 MDR-TB lineage2.2.1 None
ERR3287767 MDR-TB lineage4.3.4.2 pe
ERR3287838 Pre-XDR-TB lineage4.3.4.2 pe
ERR405221 MDR-TB lineage2.2.1.1 None
ERR4276865 XDR-TB lineage2.2.1 None
ERR4276864 MDR-TB lineage3 None
ERR3287394 Pre-XDR-TB lineage4.3.4.2 pe
ERR3287583 Pre-XDR-TB lineage4.3.4.2 None
ERR3335740 Pre-XDR-TB lineage3 pk
ERR3639811 MDR-TB lineage4.3.4.2 None
ERR4195285 MDR-TB lineage4.1.2.1 None
ERR4423650 MDR-TB lineage2.2.1.1 None
ERR4423615 Pre-XDR-TB lineage4.6.2.2 None
ERR4423659 MDR-TB lineage2.2.1.1 None
ERR4423652 MDR-TB lineage2.2.1.1 None
ERR4423651 MDR-TB lineage2.2.1.1 None
ERR4423653 MDR-TB lineage2.2.1.1 None
ERR4423637 Pre-XDR-TB lineage4.6.2.2 None
ERR4423658 MDR-TB lineage2.2.1.1 None
ERR4423735 MDR-TB lineage2.2.1 None
ERR4423748 MDR-TB lineage2.2.1 None
ERR4423742 MDR-TB lineage2.2.1 None
ERR4423747 MDR-TB lineage2.2.1 None
ERR4423773 MDR-TB lineage2.2.1.1 None
ERR4553524 MDR-TB lineage4.8 None
ERR4423774 MDR-TB lineage2.2.1.1 None
ERR4553602 MDR-TB lineage4.8 None
ERR4553728 MDR-TB lineage4.3.4.2 None
ERR4553669 MDR-TB lineage4.3.4.2 None
ERR4553750 HR-TB None
ERR4553834 Pre-XDR-TB lineage4 None
ERR4553844 MDR-TB lineage4.3.4.2 None
ERR4553842 MDR-TB lineage4.8 None
ERR4796449 Pre-XDR-TB lineage2.2.1.1 in
ERR4796398 Pre-XDR-TB lineage2.2.1.1 in
ERR4796837 MDR-TB lineage3 in
ERR4796542 Pre-XDR-TB lineage4.2.2.2 in
ERR4796825 MDR-TB lineage2.2.1 in
ERR4796528 Pre-XDR-TB lineage2.2.1 in
ERR4798364 Pre-XDR-TB lineage3 in
ERR4796876 MDR-TB lineage3.1.2.1 in
ERR4796908 Pre-XDR-TB lineage2.2.1 in
ERR4797358 Pre-XDR-TB lineage3 in
ERR4797908 Pre-XDR-TB lineage2.2.1 in
ERR4798063 Pre-XDR-TB lineage2.2.1.2 in
ERR4798102 Pre-XDR-TB lineage3 in
ERR4798295 Pre-XDR-TB lineage2.2.1.1 in
ERR4797173 Pre-XDR-TB lineage4.2.2.2 in
ERR4797297 Pre-XDR-TB lineage2.2.1 in
ERR4798155 Pre-XDR-TB lineage2.2.1.1 in
ERR4798318 Pre-XDR-TB lineage3.1.2 in
ERR4798428 MDR-TB lineage2.2.1.1 in
ERR4798455 Pre-XDR-TB lineage2.2.1.2 in
ERR4799352 Pre-XDR-TB lineage2.2.1.1 in
ERR4798942 XDR-TB lineage3.1.2 in
ERR4799231 Pre-XDR-TB lineage2.2.1.1 in
ERR4799502 Pre-XDR-TB lineage2.2.1.1 in
ERR4799999 MDR-TB lineage2.2.1.1 in
ERR4799677 Pre-XDR-TB lineage4.2.2.2 None
ERR4799862 Pre-XDR-TB lineage2.2.1.1 in
ERR4799903 Pre-XDR-TB lineage3.1.2 in
ERR4799516 MDR-TB lineage2.2.1.1 in
ERR4799658 Pre-XDR-TB lineage2.2.1.1 in
ERR4799743 Pre-XDR-TB lineage2.2.1.1 in
ERR4800711 Pre-XDR-TB lineage2.2.1 None
ERR4800245 MDR-TB lineage2.2.1.1 None
ERR4800081 Pre-XDR-TB lineage2.2.1.1 in
ERR4800159 Pre-XDR-TB lineage3 None
ERR4813715 MDR-TB lineage4.3.4.1 None
ERR4809298 MDR-TB lineage4.4.1.1 za
ERR4809353 MDR-TB lineage4.1.2.1 za
ERR4810478 Pre-XDR-TB lineage2.2.1 cn
ERR4800716 Pre-XDR-TB lineage2.2.1 None
ERR4809173 MDR-TB lineage4.4.1.1 za
ERR4813873 MDR-TB lineage4.3.4.1 None
SAMN02419536 MDR-TB lineage2.2.1 by
ERR7911437 MDR-TB lineage4.4.1.1 za
SAMN02586000 MDR-TB lineage4.4.1.1 za
ERR8975948 Pre-XDR-TB lineage4.4.1.1 None
SAMN02419685 MDR-TB lineage2.2.1 by
ERR4812827 MDR-TB lineage4 None
SRR671857 MDR-TB lineage2.2.2 cn
SRR7517735 MDR-TB lineage4.3.4.2 ch
SAMN02414906 MDR-TB lineage4.3.3 se
SRR6824559 MDR-TB lineage2.2.1 cn
SRR6824649 MDR-TB lineage2.2.1 cn
ERR7911305 MDR-TB lineage2.2.1 vn
SAMN02586002 MDR-TB lineage4.4.1.1 za
SAMN02403494 MDR-TB lineage4.4.1.1 za
SAMN02053774 MDR-TB lineage4.4.1.1 za
ERR4813394 MDR-TB lineage4.3.4.1 pe
ERR8975810 Pre-XDR-TB lineage4.4.1.1 None
SRR8651649 Pre-XDR-TB lineage2.2.1 cn
ERR751560 Pre-XDR-TB lineage4.3.4.2 pe
ERR4813535 MDR-TB lineage4.3.4.2 pe
ERR2041769 Pre-XDR-TB lineage4.8 rs
SRR5341416 MDR-TB lineage3 in
SRR5073631 MDR-TB lineage2.2.1 vn
ERR751751 MDR-TB lineage2.2.1 th
ERR550619 Pre-XDR-TB lineage4.1.1.3 sz
SAMN02403515 MDR-TB lineage4.4.1.1 za
SAMN02586004 MDR-TB lineage4.4.1.1 za
SRR1723568 MDR-TB lineage2.2.1 cn
SAMN02403581 MDR-TB lineage4.4.1.1 za
SAMN02586037 MDR-TB lineage4.4.1.1 za
SRR847797 Pre-XDR-TB lineage4.4.1.1 za
SAMN03246537 RR-TB lineage2.2.1 cn
ERR7911290 MDR-TB lineage2.1 vn
ERR2245301 MDR-TB lineage3.1.1 no
ERR8975509 XDR-TB lineage4.4.1.1 None