SRR22424792
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR5065407
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11489053
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10225494
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR7737666
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR832997
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971238
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR9029377
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR751560
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR22424733
|
RR-TB
|
lineage3.1.2
|
None
|
SRR9971365
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971316
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR6832684
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR9806836
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11080926
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2707136
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR5864856
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140899
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9907690
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4828009
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5866031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273148
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799352
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29539299
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR1184384
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11080909
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827394
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4.9
|
None
|
SAMN02586004
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11465851
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600486
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR1723555
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR17657993
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864523
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR7070207
|
RR-TB
|
lineage4.1.1.1
|
None
|
SRR1196553
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11043584
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR6832152
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11465531
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173339
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5864851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992983
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR9993071
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR551692
|
Pre-XDR-TB
|
lineage4.1.1.3
|
sz
|
SRR1165244
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4827928
|
RR-TB
|
lineage2.2.1
|
None
|
SRR12142319
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798063
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR9992643
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR11662669
|
MDR-TB
|
lineage2.1
|
None
|
SRR14088385
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773735
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR1159721
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8365894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181032
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02586002
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR245747
|
HR-TB
|
lineage3
|
mw
|
SRR18714960
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SAMN02403494
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR24709999
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6879039
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4798455
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR1167342
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11082786
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797908
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11043990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864524
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR13272899
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR9993151
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2515284
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR22175261
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21576644
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3077933
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR7911396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180770
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1168993
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774265
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
ERR13430440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13430444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715118
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR25827356
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage2.2.1.2;lineage3
|
None
|
SRR25827783
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4798102
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1167304
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29093109
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1035258
|
XDR-TB
|
lineage4.1.2.1
|
br
|
ERR8774440
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975810
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4828008
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29273811
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4828371
|
RR-TB
|
lineage4.2.2
|
vn
|
ERR7737688
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR2653148
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1173095
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29231768
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4872046
|
XDR-TB
|
lineage4.7
|
None
|
ERR2707053
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR13266784
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11465825
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488402
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488824
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1196486
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10868931
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971130
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR1146369
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4872185
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR550619
|
Pre-XDR-TB
|
lineage4.1.1.3
|
sz
|
SRR6785433
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4423773
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13289296
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR1654674
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR10748251
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9993129
|
XDR-TB
|
lineage4.4.1.1
|
None
|
DRR130166
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4276865
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1172412
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5341416
|
MDR-TB
|
lineage3
|
in
|
SRR9970996
|
XDR-TB
|
lineage4.4.1.1
|
None
|
DRR130162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796825
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4872038
|
XDR-TB
|
lineage4.7
|
None
|
SRR1173786
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28351164
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4831811
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5865276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6789637
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017658
|
MDR-TB
|
lineage4.8
|
None
|
ERR2516478
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR847797
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
ERR10748185
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13272964
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR2707172
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR5864527
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4831469
|
MDR-TB
|
lineage3
|
None
|
SRR11349209
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2510400
|
Pre-XDR-TB
|
lineage4.2.2.2
|
pk
|
ERR552539
|
MDR-TB
|
lineage3
|
de
|
ERR11466374
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040392
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4796908
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR24709991
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7737649
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1159780
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465061
|
HR-TB
|
lineage2.2.1
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924221
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR10610092
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4553728
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25827812
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR4813873
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4800159
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29231655
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR29289349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10877861
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163407
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290414
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25207174
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488757
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4819920
|
MDR-TB
|
lineage3
|
None
|
SRR12062500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10877873
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9738483
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864520
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR12118022
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5866128
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737904
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29231779
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1159521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175355
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13272892
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR13272891
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR2515636
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11081210
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR2707107
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
DRR130169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207345
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799862
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR1196716
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11044561
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR1173321
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11465631
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4800081
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR5864861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800711
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864526
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SAMN02419591
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR25827423
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4872240
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR5864857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539275
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR11349195
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6785511
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199128
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR4830562
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4872044
|
XDR-TB
|
lineage4.7
|
None
|
ERR245725
|
Sensitive
|
lineage4.3.4.2.1
|
mw
|
SRR1169310
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR12416833
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423651
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR4423653
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553834
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4553842
|
HR-TB
|
lineage4.8
|
None
|
ERR10877890
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517001
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
SAMN02403495
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11081340
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4423650
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827869
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR11972450
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748180
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29017000
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
SRR12420745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824632
|
RR-TB
|
lineage2.2.1
|
cn
|
ERR144566
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR5864852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458455
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13272916
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR833117
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR23340004
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR28394093
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1169150
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2510478
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2516213
|
Pre-XDR-TB
|
lineage2.2.1
|
be
|
ERR9992837
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR11466017
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172352
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130138
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR13286099
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR16370303
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR9907700
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR7737640
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR7737788
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165266
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11043091
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043524
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR10040322
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662456
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517735
|
MDR-TB
|
lineage4.3.4.2
|
ch
|
SRR29539037
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR5864525
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR2515242
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR16370512
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420464
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15315754
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15369001
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723815
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5865275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424921
|
MDR-TB
|
lineage3
|
None
|
SRR20969476
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796449
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR5153278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810478
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR040127
|
MDR-TB
|
lineage4.6.1.2
|
ug
|
ERR13289310
|
MDR-TB
|
lineage4.4.1.1
|
None
|
DRR130058
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832812
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR8774433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2245301
|
MDR-TB
|
lineage3.1.1
|
no
|
SRR1173245
|
MDR-TB
|
lineage2.2.1.1;lineage4.6.1
|
None
|
SRR12420805
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798318
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
SRR1165620
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02403515
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR2510871
|
Pre-XDR-TB
|
lineage2.2.1.1
|
pk
|
SAMN02403514
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
SRR25206945
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774232
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
SRR28393623
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR11081016
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424907
|
HR-TB
|
lineage3
|
None
|
SRR21576714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11466410
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872047
|
XDR-TB
|
lineage4.7
|
None
|
ERR11044603
|
HR-TB
|
lineage4.4.1.1;lineage4.8
|
None
|
ERR4553524
|
MDR-TB
|
lineage4.8
|
None
|
ERR13276394
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796837
|
MDR-TB
|
lineage3
|
in
|
ERR9992640
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4872037
|
XDR-TB
|
lineage4.7
|
None
|
SRR1140924
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5866130
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510252
|
Pre-XDR-TB
|
lineage2.2.1.1
|
pk
|
ERR4809353
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR7911290
|
MDR-TB
|
lineage2.1
|
vn
|
DRR130057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02403535
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR8975509
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR25827528
|
MDR-TB
|
lineage2.2.1.1
|
None
|
DRR130168
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420648
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255946
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR11043214
|
HR-TB
|
lineage4.4.1.1
|
None
|
SAMN02419560
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR18714971
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR5865846
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR10748445
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR18715357
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971171
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR24256365
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR5864855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423735
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255983
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4818045
|
HR-TB
|
lineage1.1.2
|
gb
|
ERR5917967
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
ERR11081545
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR671759
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13260010
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1173415
|
MDR-TB
|
lineage2.2.1.1;lineage4.6.1
|
None
|
ERR4829990
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4553750
|
HR-TB
|
lineage1.1.2
|
None
|
ERR5864860
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8365903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4195285
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29017376
|
MDR-TB
|
lineage4.8
|
None
|
ERR5917720
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR28239450
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173499
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11081401
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR12420271
|
Other
|
lineage2.2.1
|
None
|
ERR7737747
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1723568
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4830561
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR10315463
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707123
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707057
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR6856035
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13290829
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653084
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992864
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488439
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10748268
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10748318
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR5864854
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5817462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165254
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR5817465
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553669
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR10040423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419636
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR11080852
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827459
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage3
|
None
|
ERR13290415
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11488607
|
MDR-TB
|
lineage4.1.1.3
|
None
|
DRR130171
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516392
|
MDR-TB
|
lineage3
|
be
|
ERR4276864
|
MDR-TB
|
lineage3
|
None
|
SRR1172777
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707210
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
SRR24256198
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR5865279
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827748
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR7911305
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR11774892
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800716
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR7516344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034672
|
MDR-TB
|
lineage4.3
|
co
|
SRR1144751
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1173187
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865277
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822285
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827674
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR5864522
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR25827457
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage3
|
None
|
SAMN02586037
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR6824559
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1173595
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR11082402
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR13272960
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11774854
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6789620
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872039
|
XDR-TB
|
lineage4.7
|
None
|
ERR3077945
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11466245
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969779
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798295
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4831442
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR5341326
|
MDR-TB
|
lineage3
|
in
|
SRR28351536
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR2515337
|
XDR-TB
|
lineage4.1.1.3
|
za
|
ERR2707081
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
SRR28046072
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11776039
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992989
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29289263
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18715333
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR26399854
|
MDR-TB
|
lineage2.1
|
None
|
ERR13290759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748274
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR22461646
|
HR-TB
|
lineage4.3.3
|
None
|
ERR9992627
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR29341538
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510245
|
MDR-TB
|
lineage3
|
pk
|
ERR2510305
|
MDR-TB
|
lineage2.2.1.1
|
pk
|
ERR2510342
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510347
|
MDR-TB
|
lineage3
|
pk
|
ERR3335740
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4829142
|
Pre-XDR-TB
|
lineage2.2.1
|
pk
|
ERR4831497
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR13288788
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13288934
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13289266
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13430445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289309
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13290797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971286
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4796398
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29681266
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR29772785
|
HR-TB
|
lineage3
|
None
|
SRR29772818
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29539807
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR29681274
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR30180228
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR2653198
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2707204
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR4423534
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797297
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8774445
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10869118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044814
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11081066
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11081693
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR1213887
|
Pre-XDR-TB
|
lineage2.2.1.1
|
np
|
SAMN03246537
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR1196558
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5535930
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592327
|
MDR-TB
|
lineage4.8
|
None
|
SRR833017
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11798640
|
HR-TB
|
lineage4.3.3
|
None
|
ERR13272941
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR13260397
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR1034784
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR21887699
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3132127
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800245
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4822307
|
MDR-TB
|
lineage3
|
de
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR5073631
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR11082377
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR1199102
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR1165645
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1181101
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20970002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424806
|
MDR-TB
|
lineage3
|
None
|
ERR4553844
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR11043158
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11043735
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6458392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773748
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR10869132
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11080861
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9613552
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29539043
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR25827694
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29231297
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1167376
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13290720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1193880
|
Pre-XDR-TB
|
lineage4.3.2.1
|
za
|
SRR20969641
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423748
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796542
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
SRR28044478
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4799743
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29231844
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR6832301
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR24256078
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR24256185
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR11067395
|
HR-TB
|
lineage3.1.1
|
None
|
ERR4831789
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4872049
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR13284470
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13258407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29385284
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044331
|
MDR-TB
|
lineage3
|
None
|
ERR7911159
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR2515474
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4799999
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR9119583
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SAMN02414906
|
MDR-TB
|
lineage4.3.3
|
se
|
SRR1172353
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971188
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR11068850
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045563
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29538993
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4872041
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR13291130
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260044
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25827807
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR29539555
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4799231
|
HR-TB
|
lineage2.2.1.1
|
in
|
ERR3639811
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR9971052
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6480602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169148
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1173782
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13253368
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR3287767
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR25515871
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872040
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR11081080
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4872162
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR2516519
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR4831434
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR21747033
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR5535861
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13285533
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR833018
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02350474
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SAMN02586000
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SAMN01925652
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4798942
|
XDR-TB
|
lineage3.1.2
|
in
|
SAMN02419685
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5865254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971191
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR9971319
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR29274155
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813715
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4799658
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR11068474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671857
|
MDR-TB
|
lineage2.2.2
|
cn
|
SRR10315532
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3287394
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR18054800
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1173353
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2515554
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR502248
|
MDR-TB
|
lineage3
|
None
|
ERR5864862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748259
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR27069436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017022
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29093484
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4423615
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
ERR8975948
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4813535
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR11972398
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SAMN02053755
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR11488976
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1019153
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR14782095
|
HR-TB
|
lineage4.2.1.1
|
None
|
SRR16087967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29289339
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864521
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4798155
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR29016949
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4796876
|
MDR-TB
|
lineage3.1.2.1
|
in
|
ERR7911395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02053774
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR12062499
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.4.2
|
None
|
SRR1159526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119794
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424791
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR9971366
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR7737802
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR3077943
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1169314
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4423637
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
ERR11068535
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
ERR7737716
|
MDR-TB
|
lineage1.1.1
|
None
|
SRR12416825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971027
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR18715041
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR25207172
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173873
|
MDR-TB
|
lineage2.2.1.1;lineage4.6.1
|
None
|
ERR13261324
|
HR-TB
|
lineage4.8
|
None
|
SRR1163079
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872043
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR11488438
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR28044467
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864865
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872042
|
XDR-TB
|
lineage4.7
|
None
|
ERR3287583
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR29016873
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29289250
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9907761
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR688015
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4813394
|
MDR-TB
|
lineage4.3.4.1
|
pe
|
SRR5153316
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4831479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11067821
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR11081098
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11082059
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11773815
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865278
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017425
|
HR-TB
|
lineage1.1.2
|
None
|
SRR1167344
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29538890
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR29539126
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR29681264
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR29539091
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR29772626
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR8975725
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29772658
|
HR-TB
|
lineage3.1.2
|
None
|
SRR29906762
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR25207173
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539298
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR11081004
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR11082256
|
MDR-TB
|
lineage4.7
|
None
|
SRR26400062
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827652
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4.1.1.1
|
None
|
SRR29231800
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510483
|
MDR-TB
|
lineage3
|
pk
|
ERR7911191
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR10808535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR832977
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11662287
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014750
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SAMN02403581
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR671781
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4423747
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797358
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR21576732
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937074
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044953
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29273722
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29273766
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2041769
|
Pre-XDR-TB
|
lineage4.8
|
rs
|
SRR18054777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093254
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2707225
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR4831525
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR688028
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR10315465
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11662285
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167324
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1184309
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR11972300
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972409
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4831821
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR11488608
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR5864849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289365
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1034583
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR16087878
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR11081754
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR6832004
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827645
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866129
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2433011
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9119632
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR21576635
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992789
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR11082345
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830499
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR405221
|
MDR-TB
|
lineage2.2.1.1
|
None
|
DRR130167
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488919
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165668
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4830490
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR751751
|
MDR-TB
|
lineage2.2.1
|
th
|
SRR5535924
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR1165653
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7737920
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799903
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
ERR8773965
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18715071
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR9119508
|
MDR-TB
|
lineage4.6.4
|
None
|
ERR9907722
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR11488717
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7911446
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR13284413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6879040
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR11044179
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR21887681
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR30180348
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR24256340
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR5153811
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR25827784
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29056148
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2516463
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR13260096
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR4423652
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR13267667
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4799502
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799516
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798364
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4809298
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR1023399
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1035260
|
XDR-TB
|
lineage4.1.2.1
|
br
|
SRR1167345
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4872163
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR1173866
|
MDR-TB
|
lineage2.2.1.1;lineage4.6.1
|
None
|
ERR2510659
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4829969
|
MDR-TB
|
lineage3
|
pk
|
SRR21689572
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1034681
|
MDR-TB
|
lineage4.1.2.1
|
co
|
ERR13272894
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR12420332
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1169108
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993107
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR4423181
|
Pre-XDR-TB
|
lineage4
|
None
|
SAMN02403580
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR6458383
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173150
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29231311
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4822360
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774447
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207056
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR10808787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180711
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516329
|
MDR-TB
|
lineage4.3.4.2
|
be
|
DRR130197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975512
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5864850
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043660
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4553602
|
MDR-TB
|
lineage4.8
|
None
|
ERR7737843
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4423658
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR18911463
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827639
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172090
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1162977
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067611
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR9027258
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014672
|
MDR-TB
|
lineage3
|
None
|
ERR13243715
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351273
|
MDR-TB
|
lineage4.6
|
None
|
SRR28393261
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR11774853
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11774973
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR13266647
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11774887
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR11252556
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28044341
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR11774856
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5486904
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28044528
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9993232
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23311018
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1173317
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR1034596
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510861
|
MDR-TB
|
lineage3
|
pk
|
ERR2510870
|
Pre-XDR-TB
|
lineage2.2.1.1
|
pk
|
ERR5897119
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR2510882
|
Pre-XDR-TB
|
lineage4.2.1.1
|
it
|
SRR10315616
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4831012
|
Pre-XDR-TB
|
lineage2.2.1.1
|
np
|
SRR8651649
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR8651645
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR8651598
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4872045
|
XDR-TB
|
lineage4.7
|
None
|
SAMN02350492
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
SRR10315510
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1184317
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6856071
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29231861
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13267655
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR10748224
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21887747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310911
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045809
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR6824649
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13258499
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289406
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11043991
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292292
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911438
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR6832288
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19276624
|
MDR-TB
|
lineage4.7
|
None
|
ERR4797173
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR4796528
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424757
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5979425
|
RR-TB
|
lineage3
|
None
|
SRR29772674
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2517096
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR7911437
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR1163216
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR833014
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10877876
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971177
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR29231305
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10877886
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832548
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR1167316
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2706959
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR4423659
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR9971251
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799677
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR9907669
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4831433
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11082162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199096
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SAMN02419536
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR3287838
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR9971105
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4809173
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR18054811
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737738
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR7911203
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR29273746
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29274129
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4423774
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR9971199
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13290875
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR9992632
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02053771
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR4872048
|
XDR-TB
|
lineage4.7
|
None
|
ERR4423742
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184040
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872102
|
MDR-TB
|
lineage4.6.4
|
None
|
ERR4798428
|
MDR-TB
|
lineage2.2.1.1
|
in
|