EBG00000313339 - n.1425_1426delCC
Drug resistance types
3 Sensitive
25 RR-TB
4 HR-TB
12 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.3.1 | 2 |
| lineage4.8 | 13 |
| lineage1.1.2 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 6 |
| lineage2.2.1 | 22 |
| lineage4.1.1 | 4 |
| lineage4.3.1.1 | 3 |
| lineage4.3 | 1 |
| lineage4.5 | 2 |
| lineage3 | 12 |
| lineage5.1.1 | 1 |
| lineage4.9 | 10 |
| lineage4 | 3 |
| lineage4.3.4 | 1 |
| lineage4.8.1 | 1 |
| lineage4.2.2 | 2 |
| lineage2.2.2 | 1 |
| lineage1.2.2 | 1 |
| lineage4.7 | 3 |
| lineage4.1.3 | 1 |
| lineage4.1.2.1 | 17 |
| lineage1.2.1.1 | 1 |
| 2 | |
| lineage3.1.1 | 3 |
| lineage4.1.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8.2 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage3.1.3 | 1 |
| lineage4.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 131 |
Geographic prevalence
Country level data for this variant is available for 21 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4821563 | HR-TB | lineage1.1.2 | gb | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046874 | Other | lineage4.5 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796629 | Other | lineage4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | ERR9117789 | Sensitive | lineage4.8 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4814341 | Other | lineage4.7 | None | ERR4814312 | Other | lineage4 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814362 | Other | lineage4.8 | None | ERR4814507 | Other | lineage2.2.1 | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR4815452 | Other | lineage4.3.3 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4816464 | Other | lineage3 | None | ERR4814789 | Other | lineage3 | gb | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4817060 | RR-TB | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4816561 | Sensitive | lineage3 | gb | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4817189 | Other | lineage4.7 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR2513392 | Other | lineage4.3.2.1 | gb | ERR4818691 | Other | lineage4.8 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818724 | Other | lineage4.1.2.1 | gb | ERR2513059 | Other | lineage4.1.1 | gb | ERR4818126 | RR-TB | lineage1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818810 | Other | lineage2.2.1 | None | ERR4818449 | Other | lineage4.3.3 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818280 | Other | lineage4.1.2.1 | gb | ERR4818522 | Pre-XDR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR2513298 | Other | lineage4.8 | gb | SRR5007168 | RR-TB | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4820284 | Other | lineage4.9 | None | ERR2513949 | Other | lineage3 | gb | ERR2514173 | Other | lineage4.5 | gb | ERR4820318 | Other | lineage4.2.2 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR2514351 | Sensitive | lineage3 | gb | ERR4820742 | Other | lineage4.3.4.2.1 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820478 | Other | lineage3.1.3 | None | ERR4819842 | Other | lineage4.1.2.1 | None | ERR2514673 | Other | lineage4.1.2.1 | gb | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR2514962 | Other | lineage4.4 | None | ERR2514943 | Other | lineage4.8 | gb | ERR4820833 | HR-TB | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR2515093 | Other | lineage4.8.2 | gb | ERR4820122 | Other | lineage4.3.1.1 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820193 | Other | lineage3 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821796 | Other | lineage4.1.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821167 | Other | lineage4.8 | gb |
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