Rv0005 - c.609G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
15 Sensitive
0 RR-TB
39 HR-TB
20 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
7 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.1;lineage4.9 | 11 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 16 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 13 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4 | 4 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage4.1.2.1 | 3 |
| lineage4.3.2 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| 1 | |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 82 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR4024901 | Sensitive | lineage4 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4024728 | Sensitive | lineage4 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR926163 | Other | lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR4457830 | Sensitive | lineage4 | None | ERR4457783 | Sensitive | lineage4 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR987722 | MDR-TB | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None |
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